BIOPHYSICAL THEORY AND MODELING
MEMBRANES
MUSCLE AND CONTRACTILITY
CELL BIOPHYSICS
PROTEINS
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BIOPHYSICAL LETTERS
CHANNELS, RECEPTORS, AND ELECTRICAL SIGNALING
PHOTOBIOPHYSICS
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BIOENERGETICS
MINI-REVIEW
NUCLEIC ACIDS
SUPRAMOLECULAR ASSEMBLIES

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To see an article, click its [Accepted Manuscript] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

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Santhosh Palani and Casim A. Sarkar

Positive Receptor Feedback during Lineage Commitment Can Generate Ultrasensitivity to Ligand and Confer Robustness to a Bistable Switch
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.107.120600 [Abstract] [Accepted Manuscript]  

Chze-Ling Wee, Kia Balali-Mood, David Gavaghan, and Mark S.P. Sansom

The Interaction of Phospholipase A2 with a Phospholipid Bilayer: Coarse-Grained Molecular Dynamics Simulations
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.107.123190 [Abstract] [Accepted Manuscript]  

Gregory Beaucage

Towards resolution of ambiguity for the unfolded state
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.107.121855 [Abstract] [Accepted Manuscript]  

Charles Wolgemuth

Collective swimming and the dynamics of bacterial turbulence
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.107.118257 [Abstract] [Accepted Manuscript]  

Seth Weinberg, Shahriar Iravanian, and Leslie Tung

Representation of Collective Electrical Behavior Of Cardiac Cell Sheets
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.107.128207 [Abstract] [Accepted Manuscript]  

Haijun Gong, Debrup Sengupta, Adam D. Linstedt, and Russell Schwartz

Simulated de novo assembly of Golgi compartments by selective cargo capture during vesicle budding and targeted vesicle fusion
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.107.127498 [Abstract] [Accepted Manuscript]  

Kei Moritsugu and Jeremy C. Smith

REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.108.131714 [Abstract] [Accepted Manuscript]  

Songwan Jin, Zsolt Zador, and Alan S. Verkman

RANDOM-WALK MODEL OF DIFFUSION IN 3-DIMENSIONS IN BRAIN EXTRACELLULAR SPACE: COMPARISON WITH MICROFIBEROPTIC PHOTOBLEACHING MEASUREMENTS
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.108.131466 [Abstract] [Accepted Manuscript]  

Taira Vora, David Bisset, and Shin-Ho Chung

Conduction of Na+ and K+ through the NaK Channel: Molecular and Brownian Dynamics Studies
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.107.126722 [Abstract] [Accepted Manuscript]  

Paul D.W. Kirk, Tina Toni, and Michael P.H. Stumpf

Parameter Inference for Biochemical Systems that undergo a Hopf Bifurcation
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.107.126086 [Abstract] [Accepted Manuscript]  

Philippos K Tsourkas, Marjorie L Longo, and Subhadip Raychaudhuri

Monte Carlo study of single molecule diffusion can elucidate the mechanism of B cell synapse formation
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.107.122564 [Abstract] [Accepted Manuscript]  

Jianping Lin, Nadrian C Seeman, and Nagarajan Vaidehi

Molecular dynamics simulations of insertion of chemically modified DNA nanostructures into water-chloroform interface
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.107.119230 [Abstract] [Accepted Manuscript]  

Hwankyu Lee, Richard M. Venable, Alexander D. MacKerell, Jr., and Richard W. Pastor

Molecular dynamics studies of polyethylene oxide and polyethylene glycol: Hydrodynamic radius and shape anisotropy
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.108.133025 [Abstract] [Accepted Manuscript]  

Longhua Hu, Alexander Y. Grosberg, and Robijn Bruinsma

Are DNA Transcription Factor Proteins Maxwellian Demons?
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.108.129825 [Abstract] [Accepted Manuscript]  

Andras Szilagyi, Daniel Gyorffy, and Peter Zavodszky

The twilight zone between protein order and disorder
Biophys. J. BioFAST: April 25, 2008. doi:10.1529/biophysj.108.131151 [Abstract] [Accepted Manuscript]  

Eun-Hyoung PARK, Zhouyan FENG, and Dominique M. DURAND

Diffusive coupling and network periodicity: a computational study
Biophys. J. BioFAST: April 25, 2008. doi:10.1529/biophysj.108.129239 [Abstract] [Accepted Manuscript]  

Nikolai Smolin, Bin Li, David Beck, and Valerie Daggett

Side-chain dynamics are critical for water permeation through aquaporin-1
Biophys. J. BioFAST: April 25, 2008. doi:10.1529/biophysj.107.125187 [Abstract] [Accepted Manuscript]  

Kim Montgomery

Multifrequency Forcing of a Hopf Oscillator Model of the Inner Ear
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.107.118604 [Abstract] [Accepted Manuscript]  

Thomas C Bishop

Geometry of the Nucleosomal DNA Superhelix
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.107.122853 [Abstract] [Accepted Manuscript]  

Alice Nicolas, Achim Besser, and Samuel A. Safran

Dynamics of cellular focal adhesions on deformable substrates: consequences for cell force microscopy
Biophys. J. BioFAST: April 11, 2008. doi:10.1529/biophysj.107.127399 [Abstract] [Accepted Manuscript]  

Chungwen Liang, Philippe Derreumaux, Normand Mousseau, and Guanghong Wei

The -strand-loop--strand conformation is marginally populated in ₂-microglobulin (20-41) peptide in solution as revealed by replica exchange molecular dynamics simulations
Biophys. J. BioFAST: April 11, 2008. doi:10.1529/biophysj.107.125054 [Abstract] [Accepted Manuscript] [Supplement]  

Kyle C. Smith and James C. Weaver

Active mechanisms are needed to describe cell responses to submicrosecond, megavolt-per-meter pulses
Biophys. J. BioFAST: April 11, 2008. doi:10.1529/biophysj.107.121921 [Abstract] [Accepted Manuscript]  

Chu Hwan Choi, Zoi Rapti, Vladimir Gelev, Michele R. Hacker, Boian Alexandrov, Evelyn J Park, Jae Suk Park, Nobuo Horikoshi, Augusto Smerzi, Kim O Rasmussen, Alan R Bishop, and Anny Usheva

Profiling the thermodynamic softness of adenoviral promoters
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.123471 [Abstract] [Accepted Manuscript]  

Frank J Brooks and Anders E Carlsson

Actin Polymerization Overshoots and Hydrolysis as Assayed by Pyrene Fluorescence
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.123125 [Abstract] [Accepted Manuscript]  

Ranjan Mukhopadhyay, Kerwyn Casey Huang, and Ned S. Wingreen

Lipid localization in bacterial cells through curvature-mediated microphase separation
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.126920 [Abstract] [Accepted Manuscript]  

Hiroyuki Okano, Tetsuya J. Kobayashi, Hirokazu Tozaki, and Hidenori Kimura

Estimation of the source-by-source effect of autorepression on genetic noise
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.124677 [Abstract] [Accepted Manuscript] [Supplement] [Supplement]  

Weiming Cao and Borries Demeler

Modeling Analytical Ultracentrifugation Experiments with an Adaptive Space-Time Finite Element Solution for Multi-Component Reacting Systems
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.123950 [Abstract] [Accepted Manuscript]  

Dirk Gillespie, Dezso Boda, Yan He, Pavel Apel, and Zuzanna S. Siwy

Synthetic nanopores as a test case for ion channel theories: The anomalous mole fraction effect without single filing
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.127985 [Abstract] [Accepted Manuscript]  

Yuye Tang, Jejoong Yoo, Arun Yethiraj, Qiang Cui, and Xi Chen

Gating Mechanisms of Mechanosensitive Channels of Large Conductance Part II: Systematic Study of Conformational Transitions
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.128496 [Abstract] [Accepted Manuscript]  

Xi Chen, Qiang Cui, Yuye Tang, Jejoong Yoo, and Arun Yethiraj

Gating Mechanisms of Mechanosensitive Channels of Large Conductance Part I: A Continuum Mechanics-Based Hierarchical Framework
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.128488 [Abstract] [Accepted Manuscript]  

Jianhua Wu, Ying Fang, Veronika I. Zarnitsyna, Timothy P. Tolentino, Michael L. Dustin, and Cheng Zhu

A Coupled Diffusion-Kinetics Model for Analysis of Contact Area FRAP Experiment
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.114439 [Abstract] [Accepted Manuscript]  

Eduardo Sontag, Alan Veliz-Cuba, Reinhard Laubenbacher, and Abdul Salam Jarrah

The effect of negative feedback loops on the dynamics of Boolean networks
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.125021 [Abstract] [Accepted Manuscript] [Supplement]  

Lorin S Milescu, Tadashi Yamanishi, Krzysztof Ptak, Murtaza Z Mogri, and Jeffrey C Smith

Real-time kinetic modeling of voltage-gated ion channels using dynamic clamp
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.118190 [Abstract] [Accepted Manuscript] [Supplement]  

Gennady M Verkhivker, Guido Tiana, Carlo Camilloni, Davide Provasi, and Ricardo A Broglia

Atomistic simulations of the HIV--1 protease folding inhibition
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.127621 [Abstract] [Accepted Manuscript]  

Panita Decha, Thanyada Rungrotmongkol, Pathumwadee Intharathep, Mathuros Malaisree, Ornjira Aruksakunwong, Chittima Laohpongspaisan, Vudhichai Parasuk, Pornthep Sompornpisut, Somsak Pianwanit, Sirirat Kokpol, and Supot Hannongbua

Source of High Pathogenicity of an Avian Influenza Virus H5N1:Why H5 is Better Cleaved by Furin
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.127456 [Abstract] [Accepted Manuscript]  

Pieter in 't Veld and Mark J. Stevens

Simulation of the Mechanical Strength of a Single Collagen Molecule
Biophys. J. BioFAST: March 21, 2008. doi:10.1529/biophysj.107.120659 [Abstract] [Accepted Manuscript]  

Jeffrey R. Groff and Greg Smith

Ryanodine Receptor Allosteric Coupling and the Dynamics of Calcium Sparks
Biophys. J. BioFAST: March 21, 2008. doi:10.1529/biophysj.107.119982 [Abstract] [Accepted Manuscript]  

Jiankuai Diao and Emad Tajkhorshid

Indirect Role of Ca²⁺ in the Assembly of Extracelluar Matrix Proteins
Biophys. J. BioFAST: March 21, 2008. doi:10.1529/biophysj.108.129106 [Abstract] [Accepted Manuscript]  

Ines Hörger, Enrique Velasco, German Rivas, Marisela Velez, and Pedro Tarazona

FtsZ bacterial cytoskeletal polymers on curved surfaces: the importance of lateral interactions
Biophys. J. BioFAST: March 21, 2008. doi:10.1529/biophysj.107.128363 [Abstract] [Accepted Manuscript]  

Hermioni Zouridis and Vassily Hatzimanikatis

Effects of codon distributions and tRNA competition on protein translation
Biophys. J. BioFAST: March 21, 2008. doi:10.1529/biophysj.107.126128 [Abstract] [Accepted Manuscript]  

Andrew Trister and Daniel A. Hammer

Role of gp120 trimerization on HIV binding elucidated with Brownian Adhesive Dynamics
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.118430 [Abstract] [Accepted Manuscript]  

Ignacio Conde-Ramis, Dirk Drasdo, Alexander R.A. Anderson, and Mark A.J. Chaplain

Modelling the influence of the E-Cadherin - -Catenin pathway in cancer cell invasion: A multi-scale approach
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.114678 [Abstract] [Accepted Manuscript]  

Grzegorz Raszewski, Bruce A Diner, Eberhard Schlodder, and Thomas Renger

Spectroscopic properties of reaction center pigments in photosystem II core complexes: Revision of the multimer model
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.123935 [Abstract] [Accepted Manuscript] [Supplement]  

Richard A Faville, Andrew J Pullan, Kenton M Sanders, and Nicolas P Smith

A Biophysically Based Mathematical Model of Unitary Potential Activity in Interstitial Cells of Cajal
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.122507 [Abstract] [Accepted Manuscript]  

Carlo Camilloni, Alessandro Guerini Rocco, Ivano Eberini, Elisabetta Gianazza, Ricardo A Broglia, and Guido Tiana

Urea and guanidinium chloride denature Protein L in different ways in molecular dynamics simulations
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.125799 [Abstract] [Accepted Manuscript] [Supplement]  

Richard Bertram, Leslie S Satin, and Arthur Sherman

Response to Comment by F. Diederichs
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.108.128744 [Abstract] [Accepted Manuscript]  

Ariel Lubelski and Joseph Klafter

Fluorescence recovery after photobleaching (FRAP): The case of anomalous diffusion
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.119081 [Abstract] [Accepted Manuscript]  

Poonam Singhal, B Jayaram, Surjit B Dixit, and David L Beveridge

Prokaryotic Gene Finding based on Physicochemical Characterstics of Codons calculated from Molecular Dynamics Simulations
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.116392 [Abstract] [Accepted Manuscript] [Supplement]  

Maryna Kapustina, Gabriel E Weinreb, Nancy Costigliola, Zenon Raifur, Ken Jacobson, and Timothy C Elston

MECHANICAL AND BIOCHEMICAL MODELING OF CORTICAL OSCILLATIONS IN SPREADING CELLS
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.121335 [Abstract] [Accepted Manuscript] [Supplement]  

Kwang-Il Goh, Byungnam Kahng, and Kwang-Hyun Cho

Sustained Oscillations in Extended Genetic Oscillatory Systems
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.128017 [Abstract] [Accepted Manuscript]  

Johan Bredenberg, Cristina Russo, and Marcia O Fenley

Salt-Mediated Electrostatics in the Association of TATA Binding Proteins to DNA: A Combined Molecular Mechanics/Poisson-Boltzmann Study
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.125609 [Abstract] [Accepted Manuscript]  

Marcos Sotomayor and Klaus Schulten

The Allosteric Role of the Ca++ Switch in Adhesion and Elasticity of C-Cadherin
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.125591 [Abstract] [Accepted Manuscript] [Supplement]  

Hongde Liu, Jiansheng Wu, Jianming Xie, Xi’nan Yang, Zuhong Lu, and Xiao Sun

Characteristics of nucleosome core DNA and their applications in predicting nucleosome positions
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.117028 [Abstract] [Accepted Manuscript]  

Ji Guo Su, Chun Hua Li, Rui Hao, Wei Zu Chen, and Cun Xin Wang

Protein Unfolding Behavior Studied by Elastic Network Model
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.121665 [Abstract] [Accepted Manuscript]  

Satyavani Vemparala, Carmen Domene, and Michael L Klein

Interaction of anesthetics with open and closed conformations of a potassium channel studied via molecular dynamics and normal mode analysis
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.119958 [Abstract] [Accepted Manuscript] [Supplement]  

Svetoslav Nikolov and Dierk Raabe

Hierarchical Modeling of the Elastic Properties of Bone at Submicron Scales: The Role of Extrafibrillar Mineralization
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.125567 [Abstract] [Accepted Manuscript]  

Massimiliano Anselmi, Alfredo Di Nola, and Andrea Amadei

The Kinetics of ligand migration in crystallized Myoglobin as revealed by Molecular Dynamics simulations
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.124529 [Abstract] [Accepted Manuscript]  

David J Klinke 2nd, Irina V Ustyugova, Kathleen M Brundage, and John B Barnett

Modulating Temporal Control of NF-kappaB Activation: Implications for Therapeutic and Assay Selection
Biophys. J. BioFAST: February 22, 2008. doi:10.1529/biophysj.107.120451 [Abstract] [Accepted Manuscript]  

Marko Djordjevic and Ralf Bundschuh

Formation of the Open Complex by Bacterial RNA Polymerase -a Quantitative Model
Biophys. J. BioFAST: February 15, 2008. doi:10.1529/biophysj.107.116970 [Abstract] [Accepted Manuscript]  

Simone Fulle and Holger Gohlke

Analyzing the flexibility of RNA structures by constraint counting
Biophys. J. BioFAST: February 15, 2008. doi:10.1529/biophysj.107.113415 [Abstract] [Accepted Manuscript] [Supplement]  

Johan Hake and Glenn T Lines

Stochastic binding of Ca²⁺ ions in the dyadic cleft; continuous vs Random walk description of diffusion
Biophys. J. BioFAST: February 8, 2008. doi:10.1529/biophysj.106.103523 [Abstract] [Accepted Manuscript]  

Philipp M Diesinger and Dieter W Heermann

The influence of the cylindrical shape of the nucleosomes and H1 defects on properties of chromatin
Biophys. J. BioFAST: January 30, 2008. doi:10.1529/biophysj.107.113902 [Abstract] [Accepted Manuscript]  

Florent Calvo and Philippe Dugourd

Folding of gas-phase polyalanines in a static electric field: alignment, deformations, and polarization effects
Biophys. J. BioFAST: January 25, 2008. doi:10.1529/biophysj.107.124685 [Abstract] [Accepted Manuscript]  

Haiguang Liu and Yong Duan

Effects of Post-translation Modifications on the Structure and Dynamics of Histone H3 N-Terminal Peptide
Biophys. J. BioFAST: January 11, 2008. doi:10.1529/biophysj.107.115824 [Abstract] [Accepted Manuscript]  

Issam Ali, Davide Marenduzzo, and Julia M Yeomans

Ejection dynamics of polymeric chains from viral capsids: effect of solvent quality
Biophys. J. BioFAST: January 11, 2008. doi:10.1529/biophysj.107.111963 [Abstract] [Accepted Manuscript]  

Aman Mahajan, Daisuke Sato, Yohannes Shiferaw, Ali Baher, Lai-Hua Xie, Robert Peralta, Riccardo Olcese, Alan Garfinkel, Zhilin Qu, and James Weiss

MODIFYING L-TYPE CALCIUM CURRENT KINETICS: CONSEQUENCES FOR CARDIAC EXCITATION AND ARRHYTHMIA DYNAMICS
Biophys. J. BioFAST: October 26, 2007. doi:10.1529/biophysj.106.098590 [Abstract] [Accepted Manuscript]  

Aman Mahajan, Yohannes Shiferaw, Daisuke Sato, Ali Baher, Riccardo Olcese, Lai-Hua Xie, Ming-Jim Yang, Peng-Sheng Chen, Juan G Restrepo, Alain Karma, Alan Grafinkel, Zhilin Qu, and James Weiss

A RABBIT VENTRICULAR ACTION POTENTIAL MODEL REPLICATING CARDIAC DYNAMICS AT RAPID HEART RATES
Biophys. J. BioFAST: May 4, 2007. doi:10.1529/biophysj.106.098160 [Abstract] [Accepted Manuscript]  

Nigar Kantarci, Pemra Doruker, and Turkan Haliloglu

COOPERATIVE FLUCTUATIONS POINT TO THE DIMERIZATION INTERFACE OF P53 CORE DOMAIN
Biophys. J. BioFAST: April 21, 2006. doi:10.1529/biophysj.105.077800 [Abstract] [Accepted Manuscript]  

Senthil K Kandasamy and Ronald G Larson

Molecular Dynamics Study of the Lung Surfactant Peptide SP-B1-25 with DPPC monolayers : Insights into Interactions and Peptide Position and Orientation
Biophys. J. BioFAST: December 13, 2004. doi:10.1529/biophysj.103.038430 [Abstract] [Accepted Manuscript]  

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Philip D Blood, Richard D. Swenson, and Gregory A. Voth

Factors Influencing Local Membrane Curvature Induction by N-BAR Domains as Revealed by Molecular Dynamics Simulations
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.107.121160 [Abstract] [Accepted Manuscript]  

Rainer A Böckmann, Bert L de Groot, Sergej Kakorin, Eberhard Neumann, and Helmut Grubmüller

Kinetics, Statistics, and Energetics of Lipid Membrane Electroporation Studied by Molecular Dynamics Simulations
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.108.129437 [Abstract] [Accepted Manuscript]  

Sónia Troeira Henriques, Leonard Keith Pattenden, Marie Isabel Aguilar, and Miguel A.R.B. Castanho

PrP(106-126) does not interact with membranes under physiological conditions
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.108.131458 [Abstract] [Accepted Manuscript]  

Kaoru Nomura, Takehiko Inaba, Kenichi Morigaki, Klaus Brandenburg, Ulrich Seydel, and Shoichi Kusumoto

Interaction of Lipopolysaccharide and Phospholipid in Mixed Membranes: Solid-State ³¹P-NMR Spectroscopic and Microscopic Investigations
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.108.131706 [Abstract] [Accepted Manuscript]  

Ilya Levental, Paul A. Janmey, and Andrejs Cebers

Electrostatic contribution to the surface pressure of charged monolayers containing polyphosphoinositides
Biophys. J. BioFAST: April 25, 2008. doi:10.1529/biophysj.107.126615 [Abstract] [Accepted Manuscript]  

Michael P Bennett and Drake C Mitchell

Regulation of membrane proteins by dietary lipids: Effects of cholesterol and DHA on rhodopsin stability and function
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.107.122788 [Abstract] [Accepted Manuscript]  

Andreas Hjarne Kunding, Michael Wrang Mortensen, Sune M Christensen, and Dimitrios Stamou

A Fluorescence-Based Technique to Construct Size Distributions from Single Object Measurements, Application to the Extrusion of Lipid Vesicles
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.108.128819 [Abstract] [Accepted Manuscript] [Supplement]  

Aurelia R. Honerkamp-Smith, Pietro Cicuta, Marcus D. Collins, Sarah L. Veatch, Marcel den Nijs, Michael Schick, and Sarah L. Keller

Line tensions, correlation lengths, and critical exponents in lipid membranes near critical points
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.107.128421 [Abstract] [Accepted Manuscript] [Supplement]  

Dennis H Kim and John A Frangos

Effects of Amyloid Beta Peptides on the Lysis Tension of Lipid Bilayer Vesicles Containing Oxysterols
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.114983 [Abstract] [Accepted Manuscript]  

Gora M'Baye, Yves Mély, Guy Duportail, and Andrey S Klymchenko

Liquid ordered and gel phases of lipid bilayers: fluorescent probes reveal close fluidity but different hydration
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.127480 [Abstract] [Accepted Manuscript]  

Peter Schoen, Ana J. García-Sáez, Petra Malovrh, Kirsten Bacia, Gregor Anderluh, and Petra Schwille

Equinatoxin II permeabilizing activity depends on the presence of sphingomyelin and lipid phase coexistence
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.108.129981 [Abstract] [Accepted Manuscript]  

James Butler, Narla Mohandas, and Richard E Waugh

Integral protein linkage and the bilayer-skeletal separation energy in red blood cells
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.108.129163 [Abstract] [Accepted Manuscript]  

Ute Klenz, Mohammed Saleem, Michaela C Meyer, and Hans-Joachim Galla

Influence of lipid saturation grade and head group charge: A refined lung surfactant adsorption model
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.108.131102 [Abstract] [Accepted Manuscript]  

Gregory Holland and Todd M. Alam

Unique Backbone-Water Interaction Detected in Sphingomyelin Bilayers with ¹H/³¹P and ¹H/¹³C HETCOR MAS NMR Spectroscopy
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.108.130724 [Abstract] [Accepted Manuscript] [Supplement]  

Thalia T. Mills, Stephanie Tristram-Nagle, Frederick A. Heberle, Nelson F. Morales, Jiang Zhao, Jing Wu, Gilman E. S. Toombes, John F. Nagle, and Gerald W. Feigenson

Liquid-liquid domains in bilayers detected by wide angle x-ray scattering
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.127910 [Abstract] [Accepted Manuscript] [Supplement]  

Thalia T. Mills, Gilman E. S. Toombes, Stephanie Tristram-Nagle, Detlef-M. Smilgies, Gerald W. Feigenson, and John F. Nagle

Order parameters and areas in fluid-phase oriented lipid membranes using wide angle x-ray scattering
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.127845 [Abstract] [Accepted Manuscript] [Supplement]  

Christian Reich, Margaret R. Horton, Bärbel Krause, Alice P. Gast, Joachim O. Rädler, and Bert Nickel

Asymmetric structural features in single supported lipid bilayers containing cholesterol and G_M1 resolved with synchrotron X-ray reflectivity
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.113068 [Abstract] [Accepted Manuscript] [Supplement]  

Kristin J. Mattern, Chalida Nakornchai, and William M. Deen

Darcy Permeability of Agarose-Glycosaminoglycan Gels Analyzed Using Fiber-Mixture and Donnan Models
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.127316 [Abstract] [Accepted Manuscript]  

Manuela A. Zoonens, Yana K. Reshetnyak, and Donald M. Engelman

Bilayer interactions of pHLIP, a peptide that can deliver drugs and target tumors
Biophys. J. BioFAST: March 21, 2008. doi:10.1529/biophysj.107.124156 [Abstract] [Accepted Manuscript]  

Chad E Miller, Jarek Majewski, Erik Watkins, Markus Weygand, and Tonya L. Kuhl

Part II: Diffraction from 2D Cholera Toxin Crystals Bound to their Receptors in a Lipid Monolayer
Biophys. J. BioFAST: March 21, 2008. doi:10.1529/biophysj.107.120808 [Abstract] [Accepted Manuscript]  

Chad E. Miller, Jarek Majewski, Erik B. Watkins, and Tonya L. Kuhl

Part I: An X-ray Scattering Study of Cholera Toxin Penetration and Induced Phase Transformations in Lipid Membranes
Biophys. J. BioFAST: March 21, 2008. doi:10.1529/biophysj.107.120725 [Abstract] [Accepted Manuscript]  

Timothy C Anglin and John C Conboy

Lateral Pressure Dependence of the Phospholipid Transmembrane Diffusion Rate in Planar-Supported Lipid Bilayers
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.118976 [Abstract] [Accepted Manuscript]  

Smita P Soni, Daniel S LoCascio, Yidong Liu, Justin A Williams, Robert Bittman, William Stillwell, and Stephen R. Wassall

Docosahexaenoic Acid Enhances Segregation of Lipids between Raft and Non-Raft Domains: ²H NMR Study
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.123612 [Abstract] [Accepted Manuscript]  

Kathleen Wood, Ursula Lehnert, Brigitte Kessler, Giuseppe Zaccai, and Dieter Oesterhelt

Hydration dependence of active core fluctuations in bacteriorhodopsin
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.120386 [Abstract] [Accepted Manuscript]  

Wieslawa Rawicz, Benjamin A. Smith, Thomas J. McIntosh, Sidney A. Simon, and Evan A. Evans

Elasticity, Strength, and Water Permeability of Bilayers that Contain Raft Microdomain-Forming Lipids
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.121731 [Abstract] [Accepted Manuscript]  

Christian Code, Yegor Domanov, Arimatti Jutila, and Paavo K. Kinnunen

Amyloid-type Fiber Formation in Control of Enzyme Action: Interfacial Activation of Phospholipase A₂
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.108.128710 [Abstract] [Accepted Manuscript] [Supplement]  

Ana J Pérez-Berná, Jaime Guillén, Miguel R Moreno, Ana I Gómez-Sànchez, Georg Pabst, Peter Laggner, and José Villalaín

Interaction of the most membranotropic region of the HCV E2 envelope glycoprotein with membranes. Biophysical characterization
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.126896 [Abstract] [Accepted Manuscript]  

Christopher W. Harland, David Rabuka, Carolyn R. Bertozzi, and Raghuveer Parthasarathy

The M. tuberculosis virulence factor trehalose dimycolate imparts desiccation resistance to model mycobacterial membranes
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.125542 [Abstract] [Accepted Manuscript] [Supplement]  

Lars J C Jeuken

AFM study on the electric-field effects on supported bilayer lipid membranes
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.122887 [Abstract] [Accepted Manuscript]  

Don Leigh Armstrong and Raphael Zidovetzki

Amplification of Diacylglycerol Activation of Protein Kinase C by Cholesterol
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.121426 [Abstract] [Accepted Manuscript]  

Eva Sevcsik, Georg Pabst, Walter Richter, Sabine Danner, Heinz Amenitsch, and Karl Lohner

Interaction of LL-37 with model membrane systems of different complexity - Influence of the lipid matrix
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.123620 [Abstract] [Accepted Manuscript] [Supplement]  

Masatoshi Kobayashi, Andrey V. Struts, Toshimichi Fujiwara, Michael F. Brown, and Hideo Akutsu

Fluid Mechanical Matching of H⁺-ATPsynthase Subunit c Ring with Lipid Membranes Revealed by ²H Solid-State NMR
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.123745 [Abstract] [Accepted Manuscript]  

Wei-Chin Hung, Fang-Yu Chen, Chang-Chun Lee, Yen Sun, Ming-Tao Lee, and Huey W. Huang

Membrane Thinning Effect of Curcumin
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.126888 [Abstract] [Accepted Manuscript]  

Mykola V Rodnin, Yevgen O Posokhov, Christiane Contino-Pepin, Joshua Brettman, Alexander Kyrychenko, Sergiy S Palchevskyy, Bernard Pucci, and Alexey S. Ladokhin

INTERACTIONS OF FLUORINATED SURFACTANTS WITH DIPHTHERIA TOXIN T-DOMAIN: TESTING NEW MEDIA FOR STUDIES OF MEMBRANE PROTEINS
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.126235 [Abstract] [Accepted Manuscript]  

Edgar Kooijman, Jesus Sot, Ruth Montes, Alicia Alonso, Arne Gericke, Ben De Kruijff, Satyendra Kumar, and Felix M. Goni

Membrane organization and ionization behavior of the minor but crucial lipid ceramide-1-phosphate
Biophys. J. BioFAST: February 22, 2008. doi:10.1529/biophysj.107.121046 [Abstract] [Accepted Manuscript]  

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Appaji Panchangam, Dennis R. Claflin, Mark L. Palmer, and John A. Faulkner

Magnitude of sarcomere extension correlates with initial sarcomere length during lengthening of activated single fibers from soleus muscle of rats
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.107.118109 [Abstract] [Accepted Manuscript]  

Oliver Friedrich, Cornelia Weber, Frederic von Wegner, Jeffrey S Chamberlain, and Rainer H.A. Fink

Unloaded Speed of Shortening in Voltage-Clamped Intact Skeletal Muscle Fibres from wt, mdx and transgenic Mini-Dystrophin Mice using a novel High-Speed Acquisition System
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.107.126557 [Abstract] [Accepted Manuscript]  

Yves Lecarpentier, Nicolas Vignier, Patricia Oliviero, Aziz Guellich, Lucie Carrier, and Catherine Coirault

Cardiac myosin-binding protein C modulates the tuning of the molecular motor in the heart
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.127787 [Abstract] [Accepted Manuscript]  

Yuri E Nesmelov, Roman V Agafonov, Adam R Burr, Ralph T Weber, and David D. Thomas

Structure and dynamics of the force generating domain of myosin probed by multifrequency electron paramagnetic resonance
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.124305 [Abstract] [Accepted Manuscript]  

Shiho Minakata, Kayo Maeda, Naoko Oda, Katsuzo Wakabayashi, Yasushi Nitanai, and Yuichiro Maeda

Two crystal structures of tropomyosin C-terminal fragment 176-273: exposure of the hydrophobic core to the solvent destabilizes the tropomyosin molecule
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.126144 [Abstract] [Accepted Manuscript]  

Hui Wang, Shu Mao, Joseph M Chalovich, and Gerard Marriott

Tropomyosin dynamics in cardiac thin filaments: A multi-site Foerster resonance energy transfer and anisotropy study
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.121129 [Abstract] [Accepted Manuscript]  

John Jeremy Rice, Fei Wang, Donald M. Bers, and Pieter P. de Tombe

Approximate model of cooperative activation and crossbridge cycling in cardiac muscle using ordinary differential equations
Biophys. J. BioFAST: January 30, 2008. doi:10.1529/biophysj.107.119487 [Abstract] [Accepted Manuscript] [Supplement]  

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Godfrey L Smith and Niall MacQuaide

New and Notable for Ca²⁺-mobility in the sarcoplasmic reticulum of ventricular myocytes is low
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.108.133926 [Abstract] [Accepted Manuscript]  

Dan Siegal-Gaskins and Sean Crosson

Tightly-Regulated and Heritable Division Control in Single Bacterial Cells
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.108.128785 [Abstract] [Accepted Manuscript]  

Dmitry Terentyev, Zuzana Kubalova, Giorgia Valle, Alessandra Nori, Srikanth Vedamoorthyrao, Radmila Terentyeva, Serge Viatchenko-Karpinski, Donald M. Bers, Simon C. Williams, Pompeo Volpe, and Sandor Gyorke

Modulation of SR Ca Release by Luminal Ca and Calsequestrin in Cardiac Myocytes: Effects of CASQ2 Mutations Linked to Sudden Cardiac Death
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.107.128249 [Abstract] [Accepted Manuscript]  

Julia Schmitz, Benoit Martin, and Kay Eberhard Gottschalk

The Visocelasticity of Membrane Tethers and its Importance for Cell Adhesion
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.107.124289 [Abstract] [Accepted Manuscript]  

Michele D Savery and Edward R Damiano

The endothelial glycocalyx is hydrodynamically relevant in arterioles throughout the cardiac cycle
Biophys. J. BioFAST: April 25, 2008. doi:10.1529/biophysj.108.128975 [Abstract] [Accepted Manuscript] [Supplement]  

Philipp J Keller, Francesco Pampaloni, Gianluca Lattanzi, and Ernst HK Stelzer

Three-dimensional microtubule behaviour in Xenopus egg extracts reveals four dynamic states and state-dependent elastic properties
Biophys. J. BioFAST: April 25, 2008. doi:10.1529/biophysj.107.128223 [Abstract] [Accepted Manuscript] [Supplement]  

Maxine JONAS, Hayden Huang, Roger D. Kamm, and Peter T. So

Fast Fluorescence Laser Tracking Microrheometry II: Quantitative Studies of Cytoskeletal Mechanotransduction
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.107.120303 [Abstract] [Accepted Manuscript]  

Nathan J. Evans and Jeffery W. Walker

Endothelin Receptor Dimers Evaluated by FRET, Ligand Binding and Calcium Mobilization
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.107.119206 [Abstract] [Accepted Manuscript]  

Fernando Teran Arce, Jenny L Whitlock, Anna A Birukova, Konstatin G Birukov, Morton F Arnsdorf, Ratnesh Lal, Joe GN Garcia, and Steve M Dudek

Regulation of the Micromechanical Properties of Pulmonary Endothelium by S1P and Thrombin: Role of Cortactin
Biophys. J. BioFAST: April 11, 2008. doi:10.1529/biophysj.107.127167 [Abstract] [Accepted Manuscript]  

Seung E Lee, Surasak Chunsrivirot, Roger D. Kamm, and Mohammad R. K. Mofrad

Molecular Dynamics Study of Talin-Vinculin Binding
Biophys. J. BioFAST: April 11, 2008. doi:10.1529/biophysj.107.124487 [Abstract] [Accepted Manuscript] [Supplement]  

Aleksandr Rabodzey, Pilar Alcaide, Francis W Luscinskas, and Benoit Ladoux

Mechanical forces induced by the transendothelial migration of human neutrophils
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.119156 [Abstract] [Accepted Manuscript] [Supplement]  

Thomas E. Schaus and Gary G. Borisy

Performance of a population of independent filaments in lamellipodial protrusion
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.125005 [Abstract] [Accepted Manuscript]  

Marco Marenchino, Philip T F Williamson, Samuel Murri, Giorgia Zandomeneghi, Heidi Wunderli-Allenspach, Beat H Meier, and Stefanie D Krämer

Dynamics and Cleavability at the -Cleavage Site of APP(684-726) in Different Lipid Environments
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.108.129726 [Abstract] [Accepted Manuscript]  

Pawel Swietach, Kenneth W Spitzer, and Richard D Vaughan-Jones

Ca²⁺-mobility in the sarcoplasmic reticulum of ventricular myocytes is low
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.108.130385 [Abstract] [Accepted Manuscript] [Supplement]  

Timothy P. Tolentino, Jianhua Wu, Veronika I. Zarnitsyna, Ying Fang, Michael L. Dustin, and Cheng Zhu

Measuring Diffusion and Binding Kinetics by Contact Area FRAP
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.114447 [Abstract] [Accepted Manuscript]  

Jana Hueve, Ramona Wesselmann, Martin Kahms, and Reiner Peters

4Pi microscopy of the nuclear pore complex
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.127449 [Abstract] [Accepted Manuscript]  

Kathleen A. Lesich, Dominic W. Pelle, and Charles B. Lindemann

Insights into the mechanism of ADP action on flagellar motility derived from studies on bull sperm
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.127951 [Abstract] [Accepted Manuscript] [Supplement]  

Nuria Gavara, Pere Roca-Cusachs, Raimon Sunyer, Ramon Farre, and Daniel Navajas

Mapping cell-matrix stresses during stretch reveals inelastic reorganization of the cytoskeleton
Biophys. J. BioFAST: March 21, 2008. doi:10.1529/biophysj.107.124180 [Abstract] [Accepted Manuscript] [Supplement]  

Stephen Michael Kennedy, Zhen Ji, Jonathan C. Hedstrom, John H. Booske, and Susan C. Hagness

Quantification of electroporative uptake kinetics and electric field heterogeneity effects in cells
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.106.103218 [Abstract] [Accepted Manuscript]  

Yasuhiro M. Umemura, Marija Vrljic, Stefanie Y. Nishimura, Takahiro K. Fujiwara, Kenichi G. N. Suzuki, and Akihiro Kusumi

Both MHC class II and its GPI-anchored form undergo hop diffusion as observed by single-molecule tracking
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.123018 [Abstract] [Accepted Manuscript] [Supplement]  

Sourav Ganguly, Thomas J. Pucadyil, and Amitabha Chattopadhyay

Actin Cytoskeleton Dependent Dynamics of the Human Serotonin_1A Receptor Correlates with Receptor Signaling
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.125732 [Abstract] [Accepted Manuscript]  

Frank W. K-H. Diederichs

Metabolic fluxes and stoichiometry of glucose metabolism
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.127613 [Abstract] [Accepted Manuscript]  

Pere Roca-Cusachs, Jordi Alcaraz, Raimon Sunyer, Josep Samitier, Ramon Farré, and Daniel Navajas

Micropatterning of single endothelial cell shape reveals a tight coupling between nuclear volume in G1 and proliferation
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.116863 [Abstract] [Accepted Manuscript] [Supplement]  

Raibatak Das, Stephanie Hammond, David Holowka, and Barbara A. Baird

Real-time cross-correlation image analysis of early events in IgE receptor signaling
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.105502 [Abstract] [Accepted Manuscript] [Supplement]  

Lin Shao, Berith Isaac, Satoru Uzawa, David A. Agard, John W. Sedat, and Mats G.L. Gustafsson

I5S: Widefield Light Microscopy with 100-nm-scale Resolution in Three Dimensions
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.120352 [Abstract] [Accepted Manuscript] [Supplement]  

Emily Chapman-McQuiston and X.L. Wu

Stochastic Receptor Expression Allows Sensitive Bacteria to Evade Phage Attack. Part II: Theoretical Analyses
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.121723 [Abstract] [Accepted Manuscript] [Supplement]  

Otger Campas, Cecile Leduc, Patricia Bassereau, Jaume Casademunt, Jean-François Joanny, and Jacques Prost

Coordination of kinesin motors pulling on fluid membranes
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.118554 [Abstract] [Accepted Manuscript] [Supplement]  

Emily Chapman-McQuiston and X.L. Wu

Stochastic Receptor Expression Allows Sensitive Bacteria to Evade Phage Attack. Part I: Experiments
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.120212 [Abstract] [Accepted Manuscript] [Supplement]  

Khuloud Jaqaman, Jonas F Dorn, Gregory S Jelson, Jessica D Tytell, Peter K Sorger, and Gaudenz Danuser

Comparative Autoregressive Moving Average Analysis of Kinetochore Microtubule Dynamics in Yeast
Biophys. J. BioFAST: June 16, 2006. doi:10.1529/biophysj.105.080333 [Abstract] [Accepted Manuscript]  

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Alfonso De Simone, Luciana Esposito, Carlo Pedone, and Luigi Vitagliano

Insights into Stability and Toxicity of Amyloid-Like Oligomers by Replica Exchange Molecular Dynamics Analyses
Biophys. J. BioFAST: May 9, 2008. doi:10.1529/biophysj.108.129213 [Abstract] [Accepted Manuscript]  

Aviv Paz, Tzviya Zeev-Ben-Mordehai, Martin Lundqvist, Eilon Sherman, Efstratios Mylonas, Lev Weiner, Gilad Haran, Dmitri Svergun, Frans Mulder, Joel Sussman, and Israel Silman

BIOPHYSICAL CHARACTERIZATION OF THE UNSTRUCTURED CYTOPLASMIC DOMAIN OF THE HUMAN NEURONAL ADHESION PROTEIN NEUROLIGIN 3
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.107.126995 [Abstract] [Accepted Manuscript]  

Estefania Hurtado-Gomez, Olga Abian, F. Javier Munoz, Maria J Hernaiz, Adrian Velazquez-Campoy, and Jose Luis Neira

Defining the epitope region of a peptide from the Streptomyces coelicolor phosphoenolpyruvate: sugar phosphotransferase system able to bind to the enzyme I
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.107.126664 [Abstract] [Accepted Manuscript]  

Walter Stelzer, Bernhard Poschner, Holger Stalz, Albert Heck, and Dieter Langosch

Sequence-specific conformational flexibility of SNARE transmembrane helices probed by hydrogen/deuterium exchange
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.108.132928 [Abstract] [Accepted Manuscript]  

Giulia Veronesi, Lisa Giachini, Francesco Francia, Antonia Mallardi, Gerardo Palazzo, Federico Boscherini, and Giovanni Venturoli

The Fe²⁺ site of photosynthetic reaction centers probed by multiple scattering XAFS spectroscopy: improving structure resolution in dry matrices
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.108.132654 [Abstract] [Accepted Manuscript] [Supplement]  

Ron M. Finn, Kristen Browne, Kim C. Hodgson, and Juan Ausio

sNASP, a histone H1-specific eukaryotic chaperone dimer that facilitates chromatin assembly
Biophys. J. BioFAST: May 2, 2008. doi:10.1529/biophysj.108.130021 [Abstract] [Accepted Manuscript]  

Matjaz Boncina, Jurij Rescic, and Vojko Vlachy

Solubility of Lysozyme in PEG-Electrolyte Mixtures: the Depletion Interaction and Ion-Specific Effects
Biophys. J. BioFAST: April 25, 2008. doi:10.1529/biophysj.108.128694 [Abstract] [Accepted Manuscript]  

Zhongzhou Chen, Jizhong Lou, Cheng Zhu, and Klaus Schulten

Flow Induced Structural Transition in the -switch Region of Glycoprotein Ib
Biophys. J. BioFAST: April 25, 2008. doi:10.1529/biophysj.108.132324 [Abstract] [Accepted Manuscript] [Supplement]  

Nunilo Cremades and Javier Sancho

Molten Globule and Native State Ensemble of Helicobacter pylori Flavodoxin. Can crowding, osmolytes or cofactors stabilize the native conformation relative to the molten globule?
Biophys. J. BioFAST: April 25, 2008. doi:10.1529/biophysj.108.130153 [Abstract] [Accepted Manuscript]  

Olga Vites, Ernst-Ludwig Florin, and Reinhard Jahn

Docking of liposomes to planar surfaces mediated by trans-SNARE complexes
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.108.129510 [Abstract] [Accepted Manuscript]  

Edi Gabellieri, Ettore Balestreri, Alvaro Galli, and Patrizia Cioni

Cavity-creating Mutations in Pseudomonas aeruginosa Azurin. Effects on Protein Dynamics and Stability
Biophys. J. BioFAST: April 18, 2008. doi:10.1529/biophysj.107.128009 [Abstract] [Accepted Manuscript]  

Basak Isin, Klaus Schulten, Emad Tajkhorshid, and Ivet Bahar

Mechanism of Signal Propagation upon Retinal Isomerization: Insights from Molecular Dynamics Simulations of Rhodopsin Restrained by Normal Modes
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.107.120691 [Abstract] [Accepted Manuscript] [Supplement]  

Hua Deng, Scott Brewer, Dung Vu, Keith Clinch, Robert Callender, and Brian R. Dyer

On the pathway of forming enzymatically productive ligand-protein complexes in Lactate Dehydrogenase
Biophys. J. BioFAST: April 4, 2008. doi:10.1529/biophysj.108.128884 [Abstract] [Accepted Manuscript] [Supplement]  

Yi Cao, Rachel Kuske, and Hongbin Li

Direct Observation of Markovian Behavior of the Mechanical Unfolding of Individual Proteins
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.128298 [Abstract] [Accepted Manuscript] [Supplement]  

Shou Furuike, Kengo Adachi, Naoyoshi Sakaki, Rieko Shimo-Kon, Hiroyasu Itoh, Eiro Muneyuki, Masasuke Yoshida, and Kazuhiko Kinosita

Temperature Dependence of the Rotation and Hydrolysis Activities of F₁-ATPase
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.123307 [Abstract] [Accepted Manuscript]  

Nathalie Colloc'h, Laure Gabison, Gerald Monard, Muhanad Altarsha, Mohamed Chiadmi, Guillaume Marassio, Jana Sopkova-de Oliveira Santos, Mohamed El Hajji, Bertrand Castro, Jacques H. Abraini, and Thierry Prangé

Oxygen pressurized X-ray crystallography: Probing the dioxygen binding site in cofactor-less urate oxidase and implications to its catalytic mechanism
Biophys. J. BioFAST: March 28, 2008. doi:10.1529/biophysj.107.122184 [Abstract] [Accepted Manuscript] [Supplement]  

Eric S. Peterson, Emma F. Leonard, Jocelyn A. Foulke, Matthew C. Oliff, Rosanne M. Salisbury, and David Y. Kim

Folding Myoglobin Within a Sol-Gel Glass: Protein Folding Constrained to a Small Volume
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.106.097428 [Abstract] [Accepted Manuscript] [Supplement]  

Natalya Pertaya, Christopher B. Marshall, Yeliz Celik, Peter L. Davies, and Ido Braslavsky

Direct visualization of spruce budworm antifreeze protein interacting with ice crystals: basal plane affinity confers hyperactivity
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.125328 [Abstract] [Accepted Manuscript] [Supplement]  

M. Soledad Celej, Elizabeth A Jares-Erijman, and Thomas M Jovin

Fluorescent N-arylaminonaphthalene sulfonate probes for amyloid aggregation of -synuclein
Biophys. J. BioFAST: March 13, 2008. doi:10.1529/biophysj.107.125211 [Abstract] [Accepted Manuscript]  

Satoru Fujiwara, Marie Plazanet, Fumiko Matsumoto, and Toshiro Oda

Differences in internal dynamics of actin under different structural states detected by neutron scattering
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.125302 [Abstract] [Accepted Manuscript]  

Ying-Jen Shiu, U-Ser Jeng, Yu-Shan Huang, Ying-Huang Lai, Hsiu-Feng Lu, Chia-Tsen Liang, I-Jui Hsu, Chiu-Hun Su, Charlene Su, Ito Chao, An-Chung Su, and Sheng-Hsien Lin

Global and local structural changes of cytochrome c and lysozyme characterized by a multi-group unfolding process
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.124214 [Abstract] [Accepted Manuscript]  

Jed W Pitera, William C Swope, and Farid F Abraham

Observation of non-cooperative folding thermodynamics in simulations of 1BBL
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.123265 [Abstract] [Accepted Manuscript] [Supplement]  

Thomas A. Knotts IV, Nitin Rathore, and Juan De Pablo

An Entropic Perspective of Protein Stability on Surfaces
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.123158 [Abstract] [Accepted Manuscript]  

David S. Libich and George Harauz

Backbone dynamics of the 18.5 kDa isoform of myelin basic protein reveals transient alpha-helices and a calmodulin-binding site
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.125823 [Abstract] [Accepted Manuscript] [Supplement]  

Eilon Sherman, Anna Itkin, Yosef Yehuda Kuttner, Elizabeth Rhoades, Dan Amir, Elisha Haas, and Gilad Haran

Using fluorescence correlation spectroscopy to study conformational changes in denatured proteins
Biophys. J. BioFAST: March 7, 2008. doi:10.1529/biophysj.107.120220 [Abstract] [Accepted Manuscript]  

Yasumasa Joti, Hiroshi Nakagawa, Mikio Kataoka, and Akio Kitao

Hydration effects on low-frequency protein dynamics observed in simulated neutron scattering spectra
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.118042 [Abstract] [Accepted Manuscript] [Supplement] [Supplement]  

Daisuke Takahashi, Etsuko Nishimoto, Tadashi Murase, and Shoji Yamashita

Protein-protein interaction on lysozyme crystallization revealed by rotational diffusion analysis
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.111872 [Abstract] [Accepted Manuscript]  

Lars MEINHOLD, David Clement, Moeava Tehei, Roy Daniel, John L Finney, and Jeremy C Smith

Protein dynamics and stability: The distribution of atomic fluctuations in thermophilic and mesophilic dihydrofolate reductase derived using elastic incoherent neutron scattering
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.121418 [Abstract] [Accepted Manuscript]  

Tanxing Cui, Vasyl Bondarenko, Dejian Ma, Christian G. Canlas, Nicole R. Brandon, Jonas Johansson, Yan Xu, and Pei Tang

Four--Helix Bundle with Designed Anesthetic Binding Pockets II: Halothane Effects on Structure and Dynamics
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.117853 [Abstract] [Accepted Manuscript] [Supplement]  

Dejian Ma, Nicole R. Brandon, Tanxing Cui, Vasyl Bondarenko, Christian Canlas, Jonas S. Johansson, Pei Tang, and Yan Xu

Four--Helix Bundle with Designed Anesthetic Binding Pockets I: Structural and Dynamical Analyses
Biophys. J. BioFAST: February 29, 2008. doi:10.1529/biophysj.107.117838 [Abstract] [Accepted Manuscript] [Supplement]  

Giovanni Settanni and Alan R Fersht

High temperature unfolding simulations of the TRPZ1 peptide
Biophys. J. BioFAST: February 15, 2008. doi:10.1529/biophysj.107.122606 [Abstract] [Accepted Manuscript] [Supplement]  

Massimiliano Meli, Giulia Morra, and Giorgio Colombo

Investigating the Mechanism of Peptide Aggregation: Insights from Mixed MonteCarlo-Molecular Dynamics Simulations
Biophys. J. BioFAST: February 8, 2008. doi:10.1529/biophysj.107.121061 [Abstract] [Accepted Manuscript] [Supplement]  

Hai Xu, Shiamalee Perumal, Jon Zhao, Ning DU, Zongchao Jia, Xiang Liu, and Jian Ren Lu

Interfacial Adsorption of Antifreeze Proteins: a Neutron Reflection Study
Biophys. J. BioFAST: January 30, 2008. doi:10.1529/biophysj.107.124560 [Abstract] [Accepted Manuscript]  

Eva S Cobos, Adela M Candel, and Jose C Martinez

An error analysis for two-state