| Conservation of the Capsid Structure in Tailed dsDNA Bacteriophages: the Pseudoatomic Structure of ϕ29 Molecular Cell, Volume 18, Issue 2, 15 April 2005, Pages 149-159 Marc C. Morais, Kyung H. Choi, Jaya S. Koti, Paul R. Chipman, Dwight L. Anderson and Michael G. Rossmann Summary Bacteriophage 29 is one of the smallest and simplest known dsDNA phages, making it amenable to structural investigations. The three-dimensional structure of a fiberless, isometric variant has been determined to 7.9 Å resolution by cryo-electron microscopy (cryo-EM), allowing the identification of α helices and β sheets. Their arrangement indicates that the folds of the 29 and bacteriophage HK97 capsid proteins are similar except for an additional immunoglobulin-like domain of the 29 protein. An atomic model that incorporates these two domains fits well into the cryo-EM density of the = 3, fiberless isometric 29 particle, and cryo-EM structures of fibered isometric and fiberless prolate prohead 29 particles at resolutions of 8.7 Å and 12.7 Å, respectively. Thus, 29 joins the growing number of phages that utilize the HK97 capsid structure, suggesting that this protein fold may be as prevalent in capsids of dsDNA phages as the jelly roll fold is in eukaryotic viruses. Summary | Full Text | PDF (990 kb) |
| Determinants of Bacteriophage ϕ29 Head Morphology Structure, Volume 14, Issue 11, 1 November 2006, Pages 1723-1727 Kyung H. Choi, Marc C. Morais, Dwight L. Anderson and Michael G. Rossmann Summary Bacteriophage ϕ29 requires scaffolding protein to assemble the 450 × 540 Å prolate prohead with = 3 symmetry end caps. In infections with a temperature-sensitive mutant scaffolding protein, capsids assemble predominantly into 370 Å diameter isometric particles with = 3 symmetry that lack a head-tail connector. However, a few larger, 430 Å diameter, particles are also assembled. Cryo-electron microscopy shows that these larger particles are icosahedral with = 4 symmetry. The prolate prohead, as well as the two isometric capsids with = 3 and = 4 symmetry, are composed of similar pentamers and differently skewed hexamers. The skewing of the hexamers in the equatorial region of proheads and in the = 4 isometric particles reflects their different environments. One of the functions of the scaffolding protein, present in the prohead, may be to stabilize skewed hexamers during assembly. Summary | Full Text | PDF (569 kb) |
| Assembly of a Tailed Bacterial Virus and Its Genome Release Studied in Three Dimensions Cell, Volume 95, Issue 3, 30 October 1998, Pages 431-437 Yizhi Tao, Norman H Olson, Wei Xu, Dwight L Anderson, Michael G Rossmann and Timothy S Baker Summary We present the first three-dimensional reconstruction of a prolate, tailed phage, and its empty prohead precursor by cryo-electron microscopy. The head–tail connector, the central component of the DNA packaging machine, is visualized for the first time in situ within the dsDNA phage φ29. The connector, with 12- or 13-fold symmetry, appears to fit loosely into a pentameric vertex of the head, a symmetry mismatch that may be required to rotate the connector to package DNA. The prolate head of φ29 has 10 hexameric units in its cylindrical equatorial region, and 11 pentameric and 20 hexameric units comprise icosahedral end-caps with T=3 quasi-symmetry. Reconstruction of an emptied phage particle shows that the connector and neck/tail assembly undergo significant conformational changes upon ejection of DNA. Summary | Full Text | PDF (272 kb) |
Copyright © 1980 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 32, Issue 1, 234-237, 1 October 1980
doi:10.1016/S0006-3495(80)84945-9
Poster Summaries
S.R. Fish and K.A. Hartman
M.T. Fuller and Jonathan King
G.J. Thomas
Laser Raman spectra of the DNA bacteriophage P22 and of its precursor particles and related structures have been obtained using 514.5-nm excitation. The spectra show that P22 DNA exists in the B form both inside of the phage head and after extraction from the phage. The major coat protein (gp5) contains a secondary structure composed of 18% α-helix, 20% β-sheet and 62% irregular conformations. The scaffolding protein (gp8) in the phage prohead is substantially richer than gp5 in α-helical content. Among the amino acid residues which give prominent Raman lines, the spectra show that tryptophans are exposed to solvent and most tyrosines are hydrogen bonded to positive donor groups. The above features of phage DNA and protein structures are nearly invariant to changes in temperature up to 80°C, indicating a remarkable thermal stability of the phage head and its encapsulated DNA.