| Optical Anisotropy in Lipid Bilayer Membranes: Coupled Plasmon-Waveguide Resonance Measurements of Molecular Orientation, Polarizability, and Shape Biophysical Journal, Volume 80, Issue 3, 1 March 2001, Pages 1557-1567 Zdzislaw Salamon and Gordon Tollin Abstract The birefringence and linear dichroism of anisotropic thin films such as proteolipid membranes are related to molecular properties such as polarizability, shape, and orientation. Coupled plasmon-waveguide resonance (CPWR) spectroscopy is shown in the present work to provide a convenient means of evaluating these parameters in a single lipid bilayer. This is illustrated by using 1–10mol % of an acyl chain chromophore-labeled phosphatidylcholine (PC) incorporated into a solid-supported PC bilayer deposited onto a hydrated silica surface. CPWR measurements were made of refractive index and extinction coefficient anisotropies with two exciting light wavelengths, one of which is absorbed by the chromophore and one of which is not. These results were used to calculate longitudinal and transverse molecular polarizabilities, the orientational order parameter and average angle between the longitudinal axis of the lipid molecule and the membrane normal, and the molecular shape factors of the lipid molecules. The values thereby obtained are in excellent agreement with parameters determined by other techniques, and provide a powerful tool for analyzing lipid-protein, protein-protein, and protein-ligand interactions in proteolipid films. Abstract | Full Text | PDF (256 kb) |
| Photoinduced Transformations in Bacteriorhodopsin Membrane Monitored with Optical Microcavities Biophysical Journal, Volume 92, Issue 6, 15 March 2007, Pages 2223-2229 Juraj Topolancik and Frank Vollmer Abstract Photoinduced molecular transformations in a self-assembled bacteriorhodpsin (bR) monolayer are monitored by observing shifts in the near-infrared resonant wavelengths of linearly polarized modes circulating in a microsphere cavity. We quantify the molecular polarizability change upon all- to 13- isomerization and deprotonation of the chromophore retinal (∼−57Å) and determine its orientation relative to the bR membrane (∼61°). Our observations establish optical microcavities as a sensitive off-resonant spectroscopic tool for probing conformations and orientations of molecular self-assemblies and for measuring changes of molecular polarizability at optical frequencies. We provide a general estimate of the sensitivity of the technique and discuss possible applications. Abstract | Full Text | PDF (334 kb) |
| High Apparent Dielectric Constants in the Interior of a Protein Reflect Water Penetration Biophysical Journal, Volume 79, Issue 3, 1 September 2000, Pages 1610-1620 John J. Dwyer, Apostolos G. Gittis, Daniel A. Karp, Eaton E. Lattman, Daniel S. Spencer, Wesley E. Stites and Bertrand García-Moreno E. Abstract A glutamic acid was buried in the hydrophobic core of staphylococcal nuclease by replacement of Val-66. Its pK was measured with equilibrium thermodynamic methods. It was 4.3 units higher than the pK of Glu in water. This increase was comparable to the ΔpK of 4.9 units measured previously for a lysine buried at the same location. According to the Born formalism these ΔpK are energetically equivalent to the transfer of a charged group from water to a medium of dielectric constant of 12. In contrast, the static dielectric constants of dry protein powders range from 2 to 4. In the crystallographic structure of the V66E mutant, a chain of water molecules was seen that hydrates the buried Glu-66 and links it with bulk solvent. The buried water molecules have never previously been detected in >20 structures of nuclease. The structure and the measured energetics constitute compelling and unprecedented experimental evidence that solvent penetration can contribute significantly to the high apparent polarizability inside proteins. To improve structure-based calculations of electrostatic effects with continuum methods, it will be necessary to learn to account quantitatively for the contributions by solvent penetration to dielectric effects in the protein interior. Abstract | Full Text | PDF (379 kb) |
Copyright © 1995 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 68, Issue 1, 104-110, 1 January 1995
doi:10.1016/S0006-3495(95)80164-5
Research Article
F. Bartl, G. Deckers-Hebestreit, K. Altendorf and G. Zundel
Institute of Physical Chemistry, University of Munich, Germany.
The F0 complex of the Escherichia coli ATP synthase embedded into cardiolipin liposomes was studied by FT-IR spectroscopy. For comparison, respective studies were performed with dried F0 liposomes and with F0 liposomes treated with N,N'-dicyclohexyl-carbodiimide (DCCD), which binds to Asp-61 of subunit c. Furthermore, the effect of H2O-->D2O exchange on the infrared spectrum was investigated. With F0 liposomes an infrared continuum is observed beginning at about 3000 cm-1 and extending toward smaller wavenumbers. In the DCCD-treated sample, this continuum is no longer observed. It vanishes also with drying of the liposomes. After H2O-->D2O exchange, this infrared continuum begins at about 2350 cm-1 and is less intense. All of these results demonstrate that a proton pathway in native F0 is present, in which the protons are shifted in a hydrogen-bonded chain with large proton polarizability due to collective proton tunneling. With the D2O-hydrated system, deuteron polarizability due to collective deuteron motion is observed, but the polarizability due to collective deuteron motion is smaller. Such pathways are very efficient, because they conduct protons or deuterons within picoseconds. These pathways lose their polarizability if the F0 complex is blocked by DCCD or if the liposomes are dried. On the basis of our results on the proton polarizability of hydrogen bonds and hydrogen-bonded systems and on the basis of structural data from the literature, the nature of the proton pathway of the F0 complex of E. coli is discussed.