| Solid-State NMR Structure Determination of Melittin in a Lipid Environment Biophysical Journal, Volume 81, Issue 5, 1 November 2001, Pages 2752-2761 Y.H. Lam, S.R. Wassall, C.J. Morton, R. Smith and F. Separovic Abstract Solid-state C NMR spectroscopy was used to investigate the three-dimensional structure of melittin as lyophilized powder and in ditetradecylphosphatidylcholine (DTPC) membranes. The distance between specifically labeled carbons in analogs [1-C]Gly3-[2-C]Ala4, [1-C]Gly3-[2-C]Leu6, [1-C]Leu13-[2-C]Ala15, [2-C]Leu13-[1-C]Ala15, and [1-C]Leu13-[2-C]Leu16 was measured by rotational resonance. As expected, the internuclear distances measured in [1-C]Gly3-[2-C]Ala4 and [1-C]Gly3-[2-C]Leu6 were consistent with -helical structure in the N-terminus irrespective of environment. The internuclear distances measured in [1-C]Leu13-[2-C]Ala15, [2-C]Leu13-[1-C]Ala15, and [1-C]Leu13-[2-C]Leu16 revealed, via molecular modeling, some dependence upon environment for conformation in the region of the bend in helical structure induced by Pro14. A slightly larger interhelical angle between the N- and C-terminal helices was indicated for peptide in dry or hydrated gel state DTPC (139°–145°) than in lyophilized powder (121°–139°) or crystals (129°). The angle, however, is not as great as deduced for melittin in aligned bilayers of DTPC in the liquid-crystalline state (∼160°) (R. Smith, F. Separovic, T. J. Milne, A. Whittaker, F. M. Bennett, B. A. Cornell, and A. Makriyannis, 1994, 241:456–466). The study illustrates the utility of rotational resonance in determining local structure within peptide-lipid complexes. Abstract | Full Text | PDF (238 kb) |
| Oligomeric Structure, Dynamics, and Orientation of Membrane Proteins from Solid-State NMR Structure, Volume 14, Issue 12, 1 December 2006, Pages 1731-1740 Mei Hong Summary Solid-state NMR is a versatile and powerful tool for determining the dynamic structure of membrane proteins at atomic resolution. I review the recent progress in determining the orientation, the internal and global protein dynamics, the oligomeric structure, and the ligand-bound structure of membrane proteins with both α-helical and β sheet conformations. Examples are given that illustrate the insights into protein function that can be gained from the NMR structural information. Summary | Full Text | PDF (745 kb) |
| Secondary Structure and Lipid Contact of a Peptide Antibiotic in Phospholipid Bilayers by REDOR Biophysical Journal, Volume 87, Issue 1, 1 July 2004, Pages 662-674 Orsolya Toke, W. Lee Maloy, Sung Joon Kim, Jack Blazyk and Jacob Schaefer Abstract The chemical shifts of specific C and N labels distributed throughout KIAGKIA-KIAGKIA-KIAGKIA (K3), an amphiphilic 21-residue antimicrobial peptide, prove that the peptide is in an all -helical conformation in the bilayers of multilamellar vesicles (MLVs) containing dipalmitoylphosphatidylcholine and dipalmitoylphosphatidylglycerol (1:1). Rotational-echo double-resonance (REDOR) C{P} and N{P} experiments on the same labeled MLVs show that on partitioning into the bilayer, the peptide chains remain in contact with lipid headgroups. The amphipathic lysine side chains of K3 in particular appear to play a key role in the electrostatic interactions with the acidic lipid headgroups. In addition to the extensive peptide-headgroup contact, C{F} REDOR experiments on MLVs containing specifically F-labeled lipid tails suggest that a portion of the peptide is surrounded by a large number of lipid acyl chains. Complementary P{F} REDOR experiments on these MLVs show an enhanced headgroup-lipid tail contact resulting from the presence of K3. Despite these distortions, static P NMR lineshapes indicate that the lamellar structure of the membrane is preserved. Abstract | Full Text | PDF (407 kb) |
Copyright © 1995 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 69, Issue 6, 2392-2397, 1 December 1995
doi:10.1016/S0006-3495(95)80108-6
Research Article
C.L. North, M. Barranger-Mathys and D.S. Cafiso
Department of Chemistry, University of Virginia, Charlottesville 22901, USA.
Alamethicin was synthesized with 15N incorporated into alanine at position 6 in the peptide sequence. In dispersions of hydrated dimyristoylphosphatidylcholine, solid-state 15N NMR yields an axially symmetric powder pattern indicating that the peptide is reorienting with a single axis of symmetry when associated with lamellar lipids. When incorporated into bilayers that are uniformly oriented with the bilayer normal parallel to the B(o) field, the position of the observed 15N chemical shift is 171 ppm. This is coincident with the sigma parallel to edge of the axially symmetric powder pattern for non-oriented hydrated samples. Thus the axis of motional averaging lies along the bilayer normal. Two-dimensional separated local field spectra were obtained that provide a measure of the N-H dipolar coupling in one dimension and the 15N chemical shift in the other. These data yield a dipolar coupling of 17 kHz corresponding to an average angle of 24 degrees for the N-H bond with respect to the B(o) field axis. An analysis of the possible structures and orientations that could produce the observed spectral parameters show that these values are consistent with an alpha-helical conformation inserted along the bilayer normal.