| pH Dependence of Light-Driven Proton Pumping by an Archaerhodopsin from Tibet: Comparison with Bacteriorhodopsin Biophysical Journal, Volume 90, Issue 9, 1 May 2006, Pages 3322-3332 Ming Ming, Miao Lu, Sergei P. Balashov, Thomas G. Ebrey, Qingguo Li and Jiandong Ding Abstract The pH-dependence of photocycle of archaerhodopsin 4 (AR4) was examined, and the underlying proton pumping mechanism investigated. AR4 is a retinal-containing membrane protein isolated from a strain of halobacteria from a Tibetan salt lake. It acts as a light-driven proton pump like bacteriorhodopsin (BR). However, AR4 exhibits an “abnormal” feature—the time sequence of proton release and uptake is reversed at neutral pH. We show here that the temporal sequence of AR4 reversed to “normal”—proton release preceding proton uptake—when the pH is increased above 8.6. We estimated the pK of the proton release complex (PRC) in the M-intermediate to be ∼8.4, much higher than 5.7 of wide-type BR. The pH-dependence of the rate constant of M-formation shows that the pK of PRC in the initial state of AR4 is ∼10.4, whereas it is 9.7 in BR. Thus in AR4, the chromophore photoisomerization and subsequent proton transport from the Schiff base to Asp-85 is coupled to a decrease in the pK of PRC from 10.4 to 8.4, which is 2 pK units less than in BR (4 units). This weakened coupling accounts for the lack of early proton release at neutral pH and the reversed time sequence of proton release and uptake in AR4. Nevertheless the PRC in AR4 effectively facilitates deprotonation of primary proton acceptor and recovery of initial state at neutral pH. We found also that all pKs of the key amino acid residues in AR4 were elevated compared to those of BR. Abstract | Full Text | PDF (355 kb) |
| Two Groups Control Light-Induced Schiff Base Deprotonation and the Proton Affinity of Asp in the ArgHis Mutant of Bacteriorhodopsin Biophysical Journal, Volume 77, Issue 5, 1 November 1999, Pages 2750-2763 Eleonora S. Imasheva, Sergei P. Balashov, Thomas G. Ebrey, Ning Chen, Rosalie K. Crouch and Donald R. Menick Abstract Arg is one of the four buried charged residues in the retinal binding pocket of bacteriorhodopsin (bR). Previous studies show that Arg controls the pKs of Asp and the proton release group and is essential for fast light-induced proton release. To further investigate the role of Arg in light-induced proton pumping, we replaced Arg with histidine and studied the resulting pigment and its photochemical properties. The main pK of the purple-to-blue transition (pK of Asp) is unusually low in R82H: 1.0 versus 2.6 in wild type (WT). At pH 3, the pigment is purple and shows light and dark adaptation, but almost no light-induced Schiff base deprotonation (formation of the M intermediate) is observed. As the pH is increased from 3 to 7 the M yield increases with pK 4.5 to a value ∼40% of that in the WT. A transition with a similar pK is observed in the pH dependence of the rate constant of dark adaptation, . These data can be explained, assuming that some group deprotonates with pK 4.5, causing an increase in the pK of Asp and thus affecting and the yield of M. As the pH is increased from 7 to 10.5 there is a further 2.5-fold increase in the yield of M and a decrease in its rise time from 200s to 75s with pK 9.4. The chromophore absorption band undergoes a 4-nm red shift with a similar pK. We assume that at high pH, the proton release group deprotonates in the unphotolyzed pigment, causing a transformation of the pigment into a red-shifted “alkaline” form which has a faster rate of light-induced Schiff base deprotonation. The pH dependence of proton release shows that coupling between Asp and the proton release group is weakened in R82H. The pK of the proton release group in M is 7.2 (versus 5.8 in the WT). At pH<7, most of the proton release occurs during O→bR transition with ≈45ms. This transition is slowed in R82H, indicating that Arg is important for the proton transfer from Asp to the proton release group. A model describing the interaction of Asp with two ionizable residues is proposed to describe the pH dependence of light-induced Schiff base deprotonation and proton release. Abstract | Full Text | PDF (283 kb) |
| Proton Transfer Reactions in Native and Deionized Bacteriorhodopsin upon Delipidation and Monomerization Biophysical Journal, Volume 85, Issue 1, 1 July 2003, Pages 426-434 Colin D. Heyes and Mostafa A. El-Sayed Abstract We have investigated the role of the native lipids on bacteriorhodopsin (bR) proton transfer and their connection with the cation-binding role. We observe that both the efficiency of M formation and the kinetics of M rise and decay depend on the lipids and lattice but, as the lipids are removed, the cation binding is a much less important factor for the proton pumping function. Upon 75% delipidation using 3-[(cholamidopropyl)dimethylammonio]-propanesulfonate (CHAPS), the M formation and decay kinetics are much slower than the native, and the efficiency of M formation is ∼30%–40% that of the native. Upon monomerization of bR by Trition X-100, the efficiency of M recovers close to that of the native (depending on pH), M formation is ∼10 times faster, and M decay kinetics are comparable to native at pH 7. The same results on the M intermediate are observed if deionized blue bR (deI bbR) is treated with these detergents (with or without pH buffers present), even though deionized blue bR containing all the lipids has no photocycle. This suggests that the cation(s) has a role in native bR that is different than in delipidated or monomerized bR, even so far as to suggest that the cation(s) becomes unimportant to the function as the lipids are removed. Abstract | Full Text | PDF (608 kb) |
Copyright © 1996 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 71, Issue 4, 1973-1984, 1 October 1996
doi:10.1016/S0006-3495(96)79395-5
Research Article
S.P. Balashov, E.S. Imasheva, R. Govindjee, M. Sheves and T.G. Ebrey
Department of Cell and Structural Biology, University of Illinois at Urbana-Champaign 61801, USA.
Three experimental observations indicate that the pK(a) of the purple-to-blue transition (the pK(a) of Asp-85) is higher for all-trans-bR(1) than for 13-cis-bR. First, light adaptation of bacteriorhodopsin (bR) at pHs near the pK(a) of Asp-85 causes an increase in the fraction of the blue membrane present. This transformation is reversible in the dark. Second, the pK(a) of the purple-to-blue transition in the dark is lower than that in the light-adapted bR (pK(a)(DA) = 3.5, pK(a)(LA) = 3.8 in 10 microM K(2)SO(4)). Third, the equilibrium fractions of 13-cis and all-trans isomers are pH dependent; the fraction of all-trans-bR increases upon formation of the blue membrane. Based on the conclusion that thermal all-trans <=> 13-cis isomerization occurs in the blue membrane rather than in the purple, we have developed a simple model that accounts for all three observations. From the fit of experimental data we estimate that the pK(a) of Asp-85 in 13-cis-bR is 0.5 +/- 0.1 pK(a) unit less than the pK(a) of all-trans-bR. Thus in 10 microM K(2)SO(4), pK(a)(c) = 3.3, whereas pK(a)(t) = 3.8.