| Effect of Heavy Water on Protein Flexibility Biophysical Journal, Volume 82, Issue 6, 1 June 2002, Pages 3246-3253 Patrizia Cioni and Giovanni B. Strambini Abstract The effects of heavy water (DO) on internal dynamics of proteins were assessed by both the intrinsic phosphorescence lifetime of deeply buried Trp residues, which reports on the local structure about the triplet probe, and the bimolecular acrylamide phosphorescence quenching rate constant that is a measure of the average acrylamide diffusion coefficient through the macromolecule. The results obtained with several protein systems (ribonuclease T1, superoxide dismutase, -lactoglobulin, liver alcohol dehydrogenase, alkaline phosphatase, and apo- and Cd-azurin) demonstrate that in most cases DO does significantly increase the rigidity the native structure. With the exception of alkaline phosphatase, the kinetics of the structure tightening effect of deuteration are rapid compared with the rate of H/D exchange of internal protons, which would then assign the dampening of structural fluctuations in DO to a solvent effect, rather than to stronger intramolecular D bonding. Structure tightening by heavy water is generally amplified at higher temperatures, supporting a mostly hydrophobic nature of the underlying interaction, and under conditions that destabilize the globular fold. Abstract | Full Text | PDF (123 kb) |
| Cavity-Creating Mutations in Pseudomonas aeruginosa Azurin: Effects on Protein Dynamics and Stability Biophysical Journal, Volume 95, Issue 2, 15 July 2008, Pages 771-781 Edi Gabellieri, Ettore Balestreri, Alvaro Galli and Patrizia Cioni Abstract Changes in flexibility and structural stability of azurin in response to cavity-creating mutations were probed by the phosphorescence emission of Trp-48, which was deeply buried in the compact hydrophobic core of the macromolecule, and by measurements of guanidinum hydrochloride unfolding, respectively. Replacement of the bulky side chains Phe-110, Phe-29, and Tyr-108 with the smaller Ala introduced cavities at different distances from the hydrophobic core. The phosphorescence lifetime () of Trp-48, buried inside the protein core, and the acrylamide quenching rate constant () were used to monitor local and global flexibility changes induced by the introduction of the cavity. The results of this work demonstrate the following: 1), the effect on core flexibility of the insertion of cavities is not correlated readily to the distance of the cavity from the core; 2), the protein global flexibility results are related to the cavity distance from the packed core of the macromolecule; and 3), the increase in protein flexibility does not correspond necessarily to a comparable destabilizing effect of some mutations. Abstract | Full Text | PDF (319 kb) |
| Mutations in Transhydrogenase Change the Fluorescence Emission State of TRP from La to Lb Biophysical Journal, Volume 95, Issue 7, 1 October 2008, Pages 3419-3428 Karina Tveen Jensen, Giovanni Strambini, Margherita Gonnelli, Jaap Broos and J. Baz Jackson Abstract The dI component of transhydrogenase has a single Trp residue (Trp), which has distinctive optical properties, including short-wavelength fluorescence emission with clear vibrational fine structure, and long-lived, well-resolved phosphorescence emission. We have made a set of mutant dI proteins in which residues contacting Trp are conservatively substituted. The room-temperature fluorescence-emission spectra of our three Met mutants are blue shifted by ∼4nm, giving them a shorter-wavelength emission than any other protein described in the literature, including azurin from . Fluorescence spectra in low-temperature glasses show equivalent well-resolved vibrational bands in wild-type and the mutant dI proteins, and in azurin. Substitution of Met in dI changes the relative intensities of some of these vibrational bands. The analysis supports the view that fluorescence from the Met mutants arises predominantly from the L excited singlet state of Trp, whereas L is the predominant emitting state in wild-type dI. It is suggested that the sulfur atom of Met promotes greater stabilization of L than either L or the ground state. The phosphorescence spectra of Met mutants are also blue-shifted, indicating that the sulfur atom decreases the transition energy between the L state of the Trp and the ground state. Abstract | Full Text | PDF (222 kb) |
Copyright © 1996 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 71, Issue 4, 2138-2143, 1 October 1996
doi:10.1016/S0006-3495(96)79414-6
Research Article
J.E. Hansen, D.G. Steel and A. Gafni
University of Michigan, Institute of Gerontology, Ann Arbor, 48109–2007 USA.
Azurin, a blue copper protein from the bacterial species Pseudomonas aeruginosa, contains a single tryptophan residue. Previous fluorescence measurements indicate that this residue is highly constrained and unusually inaccessible to water. In the apoprotein this residue also possesses a long-lived room-temperature phosphorescence (RTP), the nonexponential decay of which can be resolved into two major components associated with lifetimes of 417 and 592 ms, which likely originate from at least two conformations of the protein. The relative weights of these two decay components change with pH in good correlation with a change in protonation of His-35, which has been studied in Cu(II) azurin. Interestingly, the structural changes characterized in earlier work have little effect on the fluorescence decay and appear to occur away from the tryptophan residue. However, in the present work, the two RTP lifetimes suggest conformations with different structural rigidities in the vicinity of the tryptophan residue. The active conformation that predominates below a pH of 5.6 has the shorter lifetime and is less rigid. Phosphorescence decays of several metal derivatives of azurin were also measured and revealed strong similarities to that of apoazurin, indicating that the structural constraints upon the metal-binding site are imposed predominately by the protein.