| A new caged Ca, azid-1, is far more photosensitive than nitrobenzyl-based chelators Chemistry & Biology, Volume 4, Issue 11, 1 November 1997, Pages 867-878 Stephen R. Adams, Varda Lec-Ram and Roger Y. Tsien Summary Azid-1 promises to be a useful tool for generating highly controlled spatial and temporal increases of Ca in studies of the many Ca-dependent biological processes. Unlike other caged calciums, azid-1 has a substantial cross section or shows a high susceptibility for two-photon photolysis, the only technique that confines the photochemistry to a focal spot that is localized in three dimensions. Azide photolysis could be a useful and more photosensitive alternative to nitrobenzyl photochemistry. Summary | PDF (1480 kb) |
| Characterization of a New Caged Proton Capable of Inducing Large pH Jumps Biophysical Journal, Volume 83, Issue 5, 1 November 2002, Pages 2864-2871 Andreas Barth and John E.T. Corrie Abstract A new caged proton, 1-(2-nitrophenyl)ethyl sulfate (caged sulfate), is characterized by infrared spectroscopy and compared with a known caged, proton 2-hydroxyphenyl 1-(2-nitrophenyl)ethyl phosphate (caged HPP). In contrast to caged HPP, caged sulfate can induce large pH jumps and protonate groups that have pK values as low as 2.2. The photolysis mechanism of caged sulfate is analogous to that of -[1-(2-nitrophenyl)ethyl] ATP (caged ATP), and the photolysis efficiency is similar. The utility of this new caged compound for biological studies was demonstrated by its ability to drive the acid-induced conformational change of metmyoglobin. This transition from the native conformation to a partially unfolded form takes place near pH 4 and was monitored by near-UV absorption spectroscopy. Abstract | Full Text | PDF (237 kb) |
| Measurement of Nucleotide Exchange Rate Constants in Single Rabbit Soleus Myofibrils during Shortening and Lengthening Using a Fluorescent ATP Analog Biophysical Journal, Volume 78, Issue 2, 1 February 2000, Pages 918-926 Ibuki Shirakawa, Shigeru Chaen, Clive R. Bagshaw and Haruo Sugi Abstract The kinetics of displacement of a fluorescent nucleotide, 2′(3′)--[N[2-[[Cy3]amido]ethyl]carbamoyl]-adenosine 5′-triphosphate (Cy3-EDA-ATP), bound to rabbit soleus muscle myofibrils were studied using flash photolysis of caged ATP. Use of myofibrils from this slow twitch muscle allowed better resolution of the kinetics of nucleotide exchange than previous studies with psoas muscle myofibrils (Chaen et al., 1997, 73:2033–2042). Soleus myofibrils in the presence of Cy3-EDA-nucleotides (Cy3-EDA-ATP or Cy3-EDA-ADP) showed selective fluorescence staining of the A-band. The for Cy3-EDA-ATP and the for Cy3-EDA-ADP binding to the myofibril A-band were 1.9M and 3.8M, respectively, indicating stronger binding of nucleotide to soleus cross-bridges compared to psoas cross-bridges (2.6M and 50M, respectively). After flash photolysis of caged ATP, the A-band fluorescence of the myofibril in the Cy3-EDA-ATP solution under isometric conditions decayed exponentially with a rate constant of 0.045±0.007s (=32) at 10°C, which was about seven times slower than that for psoas myofibrils. When a myofibril was allowed to shorten with a constant velocity, the nucleotide displacement rate constant increased from 0.066s (isometric) to 0.14s at 20°C with increasing shortening velocity up to 0.1 myofibril length/s (, the shortening velocity under no load was ∼0.2 myofibril lengths/s). The rate constant was not significantly affected by an isovelocity stretch of up to 0.1 myofibril lengths/s. These results suggest that the cross-bridge kinetics are not significantly affected at higher strain during lengthening but depend on the lower strain during shortening. These data also indicate that the interaction distance between a cross-bridge and the actin filament is at least 16nm for a single cycle of the ATPase. Abstract | Full Text | PDF (618 kb) |
Copyright © 1996 The Biophysical Society. All rights reserved.
Biophysical Journal, Volume 71, Issue 6, 3330-3343, 1 December 1996
doi:10.1016/S0006-3495(96)79526-7
Research Article
C.L. Berger, J.S. Craik, D.R. Trentham, J.E. Corrie and Y.E. Goldman
Department of Physiology, University of Pennsylvania, Philadelphia, USA. berger@salus.med.uvm.edu
Fluorescence polarization was used to examine orientational changes of Rhodamine probes in single, skinned muscle fibers from rabbit psoas muscle following either photolysis of caged nucleotides or rapid length changes. Fibers were extensively and predominantly labeled at SH1 (Cys-707) of the myosin heavy chain with either the 5- or the 6-isomer of iodoacetamidotetramethylrhodamine. Results from spectroscopic experiments utilizing the two Rhodamine isomers were quite similar. Following photolysis of either caged ATP or caged ADP, probes promptly reoriented toward the muscle fiber axis. Changes in the fluorescence polarization signals with transients elicited by the photolysis of caged ATP in the presence of saturating Ca2+ greatly preceded active force generation. Photolysis of caged ADP caused only a small, rapid decrease in force but elicited changes in the fluorescence polarization signals with time course and amplitude similar to those following photolysis of caged ATP. Fluorescence polarization signals were virtually unchanged by rapid length steps in both rigor and active muscle fibers. These results indicate that structural changes monitored by Rhodamine probes at SH1 are not associated directly with the force-generating event of muscle contraction. However, the fluorescence polarization transients were slightly faster than the estimated rate of cross-bridge detachment following photolysis of caged ATP, suggesting that the observed structural changes at SH1 may be involved in the communication pathway between the nucleotide- and actin-binding sites of myosin.