help button home button Biophys. J.
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS

Biophysical Journal 73: 2269-2279 (1997)
© 1997 the Biophysical Society

This Article
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Feller, S E
Right arrow Articles by MacKerell, A D
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Feller, S E
Right arrow Articles by MacKerell, A D, Jr

Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies.

S E Feller, D Yin, R W Pastor and A D MacKerell, Jr

Biophysics Laboratory, Center for Biologics Evaluation and Research, Food and Drug Administration, Rockville, Maryland 20852-1448, USA.

ABSTRACT

A potential energy function for unsaturated hydrocarbons is proposed and is shown to agree well with experiment, using molecular dynamics simulations of a water/octene interface and a dioleoyl phosphatidylcholine (DOPC) bilayer. The simulation results verify most of the assumptions used in interpreting the DOPC experiments, but suggest a few that should be reconsidered. Comparisons with recent results of a simulation of a dipalmitoyl phosphatidylcholine (DPPC) lipid bilayer show that disorder is comparable, even though the temperature, hydration level, and surface area/lipid for DOPC are lower. These observations highlight the dramatic effects of unsaturation on bilayer structure.




This article has been cited by other articles:


Home page
Biophys. JHome page
A. Catte, J. C. Patterson, D. Bashtovyy, M. K. Jones, F. Gu, L. Li, A. Rampioni, D. Sengupta, T. Vuorela, P. Niemela, et al.
Structure of Spheroidal HDL Particles Revealed by Combined Atomistic and Coarse-Grained Simulations
Biophys. J., March 15, 2008; 94(6): 2306 - 2319.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
H. D. Herce and A. E. Garcia
Molecular dynamics simulations suggest a mechanism for translocation of the HIV-1 TAT peptide across lipid membranes
PNAS, December 26, 2007; 104(52): 20805 - 20810.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
J. Wong-ekkabut, Z. Xu, W. Triampo, I-M. Tang, D. P. Tieleman, and L. Monticelli
Effect of Lipid Peroxidation on the Properties of Lipid Bilayers: A Molecular Dynamics Study
Biophys. J., December 15, 2007; 93(12): 4225 - 4236.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
R. W. Benz, H. Nanda, F. Castro-Roman, S. H. White, and D. J. Tobias
Diffraction-Based Density Restraints for Membrane and Membrane-Peptide Molecular Dynamics Simulations
Biophys. J., November 15, 2006; 91(10): 3617 - 3629.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
G. R. Meyer, J. Gullingsrud, K. Schulten, and B. Martinac
Molecular Dynamics Study of MscL Interactions with a Curved Lipid Bilayer
Biophys. J., September 1, 2006; 91(5): 1630 - 1637.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
J. B. Klauda, N. Kucerka, B. R. Brooks, R. W. Pastor, and J. F. Nagle
Simulation-Based Methods for Interpreting X-Ray Data from Lipid Bilayers
Biophys. J., April 15, 2006; 90(8): 2796 - 2807.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
E. Ramirez, A. Santana, A. Cruz, I. Plasencia, and G. E. Lopez
Molecular Dynamics of Surfactant Protein C: From Single Molecule to Heptameric Aggregates
Biophys. J., April 15, 2006; 90(8): 2698 - 2705.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
N. Kucerka, Y. Liu, N. Chu, H. I. Petrache, S. Tristram-Nagle, and J. F. Nagle
Structure of Fully Hydrated Fluid Phase DMPC and DLPC Lipid Bilayers Using X-Ray Scattering from Oriented Multilamellar Arrays and from Unilamellar Vesicles
Biophys. J., April 1, 2005; 88(4): 2626 - 2637.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
R. W. Benz, F. Castro-Roman, D. J. Tobias, and S. H. White
Experimental Validation of Molecular Dynamics Simulations of Lipid Bilayers: A New Approach
Biophys. J., February 1, 2005; 88(2): 805 - 817.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
D. J. Goodyear, S. Sharpe, C. W. M. Grant, and M. R. Morrow
Molecular Dynamics Simulation of Transmembrane Polypeptide Orientational Fluctuations
Biophys. J., January 1, 2005; 88(1): 105 - 117.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
A. Y. Shih, I. G. Denisov, J. C. Phillips, S. G. Sligar, and K. Schulten
Molecular Dynamics Simulations of Discoidal Bilayers Assembled from Truncated Human Lipoproteins
Biophys. J., January 1, 2005; 88(1): 548 - 556.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
M. O. Jensen, O. G. Mouritsen, and G. H. Peters
Simulations of a Membrane-Anchored Peptide: Structure, Dynamics, and Influence on Bilayer Properties
Biophys. J., June 1, 2004; 86(6): 3556 - 3575.
[Abstract] [Full Text] [PDF]


Home page
J. Lipid Res.Home page
T. Rog, K. Murzyn, R. Gurbiel, Y. Takaoka, A. Kusumi, and M. Pasenkiewicz-Gierula
Effects of phospholipid unsaturation on the bilayer nonpolar region: a molecular simulation study
J. Lipid Res., February 1, 2004; 45(2): 326 - 336.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
S. W. Chiu, E. Jakobsson, R. J. Mashl, and H. L. Scott
Cholesterol-Induced Modifications in Lipid Bilayers: A Simulation Study
Biophys. J., October 1, 2002; 83(4): 1842 - 1853.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
C. F. Lopez, M. Montal, J. K. Blasie, M. L. Klein, and P. B. Moore
Molecular Dynamics Investigation of Membrane-Bound Bundles of the Channel-Forming Transmembrane Domain of Viral Protein U from the Human Immunodeficiency Virus HIV-1
Biophys. J., September 1, 2002; 83(3): 1259 - 1267.
[Abstract] [Full Text] [PDF]




HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
Copyright © 1997 by the Biophysical Society.