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Biophys J, June 1999, p. 2879-2886, Vol. 76, No. 6

Restoring Low Resolution Structure of Biological Macromolecules from Solution Scattering Using Simulated Annealing

D. I. Svergun

European Molecular Biology Laboratory, Hamburg, Germany and Institute of Crystallography, Russian Academy of Sciences, Moscow, Russia

A method is proposed to restore ab initio low resolution shape and internal structure of chaotically oriented particles (e.g., biological macromolecules in solution) from isotropic scattering. A multiphase model of a particle built from densely packed dummy atoms is characterized by a configuration vector assigning the atom to a specific phase or to the solvent. Simulated annealing is employed to find a configuration that fits the data while minimizing the interfacial area. Application of the method is illustrated by the restoration of a ribosome-like model structure and more realistically by the determination of the shape of several proteins from experimental x-ray scattering data.

Biophys J, June 1999, p. 2879-2886, Vol. 76, No. 6
© 1999 by the Biophysical Society   0006-3495/99/06/2879/08  $2.00



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