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Biophys J, December 1999, p. 3227-3233, Vol. 77, No. 6

Microsecond Time-Scale Discrimination Among Polycytidylic Acid, Polyadenylic Acid, and Polyuridylic Acid as Homopolymers or as Segments Within Single RNA Molecules

Mark Akeson,* Daniel Branton,# John J. Kasianowicz,§ Eric Brandin,# and David W. Deamer*

 *Department of Chemistry & Biochemistry, University of California, Santa Cruz, CA 95064;  #Department of Molecular & Cellular Biology, Harvard University, Cambridge, MA 02138; and  §Biotechnology Division, National Institute of Standards & Technology, Gaithersburg, MD 20899

Single molecules of DNA or RNA can be detected as they are driven through an alpha -hemolysin channel by an applied electric field. During translocation, nucleotides within the polynucleotide must pass through the channel pore in sequential, single-file order because the limiting diameter of the pore can accommodate only one strand of DNA or RNA at a time. Here we demonstrate that this nanopore behaves as a detector that can rapidly discriminate between pyrimidine and purine segments along an RNA molecule. Nanopore detection and characterization of single molecules represent a new method for directly reading information encoded in linear polymers, and are critical first steps toward direct sequencing of individual DNA and RNA molecules.

Biophys J, December 1999, p. 3227-3233, Vol. 77, No. 6
© 1999 by the Biophysical Society   0006-3495/99/12/3227/07  $2.00



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