| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
Biophys J, June 2002, p. 2943-2950, Vol. 82, No. 6
Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139 USA
Ultrasensitive cascades often implement thresholding
operations in cell signaling and gene regulatory networks, converting graded input signals into discrete all-or-none outputs. However, the
biochemical and genetic reactions involved in such cascades are subject
to random fluctuations, leading to noise in output signal levels. Here
we prove that cascades operating near saturation have output signal
fluctuations that are bounded in magnitude, even as the number of noisy
cascade stages becomes large. We show that these fluctuation-bounded
cascades can be used to attenuate the noise in an input signal, and we
find the optimal cascade length required to achieve the best possible
noise reduction. Cascades with ultrasensitive transfer functions
naturally operate near saturation, and can be made to simultaneously
implement thresholding and noise reduction. They are therefore ideally
suited to mediate signal transfer in both natural and artificial
biological networks.
Biophys J, June 2002, p. 2943-2950, Vol. 82, No. 6
© 2002 by the Biophysical Society 0006-3495/02/06/2943/08 $2.00
This article has been cited by other articles:
![]() |
C. A. Miller and D. A. Beard The Effects of Reversibility and Noise on Stochastic Phosphorylation Cycles and Cascades Biophys. J., September 1, 2008; 95(5): 2183 - 2192. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Lan and G. A. Papoian The Stochastic Dynamics of Filopodial Growth Biophys. J., May 15, 2008; 94(10): 3839 - 3852. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. C. Janga, H. Salgado, A. Martinez-Antonio, and J. Collado-Vides Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli Nucleic Acids Res., November 29, 2007; 35(20): 6963 - 6972. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Levine, H. Y. Kueh, and L. Mirny Intrinsic Fluctuations, Robustness, and Tunability in Signaling Cycles Biophys. J., June 15, 2007; 92(12): 4473 - 4481. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Morishita, T. J. Kobayashi, and K. Aihara An Optimal Number of Molecules for Signal Amplification and Discrimination in a Chemical Cascade Biophys. J., September 15, 2006; 91(6): 2072 - 2081. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. M. Pedraza and A. van Oudenaarden Noise Propagation in Gene Networks Science, March 25, 2005; 307(5717): 1965 - 1969. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Orrell, S. Ramsey, P. de Atauri, and H. Bolouri A method for estimating stochastic noise in large genetic regulatory networks Bioinformatics, January 15, 2005; 21(2): 208 - 217. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Batchelor, T. J. Silhavy, and M. Goulian Continuous Control in Bacterial Regulatory Circuits J. Bacteriol., November 15, 2004; 186(22): 7618 - 7625. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Mayawala, C. A. Gelmi, and J. S. Edwards MAPK Cascade Possesses Decoupled Controllability of Signal Amplification and Duration Biophys. J., November 1, 2004; 87(5): L01 - L02. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. K. Mutalik, P. Shah, and K. V. Venkatesh Allosteric Interactions and Bifunctionality Make the Response of Glutamine Synthetase Cascade System of Escherichia coli Robust and Ultrasensitive J. Biol. Chem., July 11, 2003; 278(29): 26327 - 26332. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Louis and A. Becskei Binary and Graded Responses in Gene Networks Sci. Signal., July 30, 2002; 2002(143): pe33 - pe33. [Abstract] [Full Text] [PDF] |
||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |