help button home button Biophys. J.
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS

This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Nestorovich, E. M.
Right arrow Articles by Bezrukov, S. M.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Nestorovich, E. M.
Right arrow Articles by Bezrukov, S. M.
Biophysical Journal 85:3718-3729 (2003)
© 2003 The Biophysical Society

Residue Ionization and Ion Transport through OmpF Channels

Ekaterina M. Nestorovich, Tatiana K. Rostovtseva and Sergey M. Bezrukov

Laboratory of Physical and Structural Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland

Correspondence: Address reprint requests to Sergey M. Bezrukov, NICHD, National Institutes of Health, Bldg. 9, Room 1N-124B, Bethesda, MD 20892-0924. Tel.: 301-402-4701; Fax: 301-496-2172; E-mail: bezrukos{at}mail.nih.gov.

Single trimeric channels of the general bacterial porin, OmpF, were reconstituted into planar lipid membranes and their conductance, selectivity, and open-channel noise were studied over a wide range of proton concentrations. From pH 1 to pH 12, channel transport properties displayed three characteristic regimes. First, in acidic solutions, channel conductance is a strong function of pH; it increases by approximately threefold as the proton concentration decreases from pH 1 to pH 5. This rise in conductance is accompanied by a sharp increase in cation transport number and by pronounced open-channel low-frequency current noise with a peak at ~pH 2.5. Random stepwise transients with amplitudes at ~1/5 of the monomer conductance are major contributors to this noise. Second, over the middle range (pH 5 ÷ pH 9), channel conductance and selectivity stay virtually constant; open channel noise is at its minimum. Third, over the basic range (pH 9 ÷ pH 12), channel conductance and cation selectivity start to grow again with an onset of a higher frequency open-channel noise. We attribute these effects to the reversible protonation of channel residues whose pH-dependent charge influences transport by direct interactions with ions passing through the channel.




This article has been cited by other articles:


Home page
J. Biol. Chem.Home page
G. Duret, M. Szymanski, K.-J. Choi, H.-J. Yeo, and A. H. Delcour
The TpsB Translocator HMW1B of Haemophilus influenzae Forms a Large Conductance Channel
J. Biol. Chem., June 6, 2008; 283(23): 15771 - 15778.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
J. Cervera, A. G. Komarov, and V. M. Aguilella
Rectification Properties and pH-Dependent Selectivity of Meningococcal Class 1 Porin
Biophys. J., February 15, 2008; 94(4): 1194 - 1202.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
U. Wedemeyer, G. Peng, H. Michel, and K. Hartung
Protein AQ_1862 from the Hyperthermophilic Bacterium Aquifex aeolicus Is a Porin and Contains Two Conductance Pathways of Different Selectivity
Biophys. J., October 15, 2007; 93(8): 2667 - 2677.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
E. K. Schmitt, M. Vrouenraets, and C. Steinem
Channel Activity of OmpF Monitored in Nano-BLMs
Biophys. J., September 15, 2006; 91(6): 2163 - 2171.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
G. Duret and A. H. Delcour
Deoxycholic Acid Blocks Vibrio cholerae OmpT but Not OmpU Porin
J. Biol. Chem., July 21, 2006; 281(29): 19899 - 19905.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
E. M. Nestorovich, E. Sugawara, H. Nikaido, and S. M. Bezrukov
Pseudomonas aeruginosa Porin OprF: PROPERTIES OF THE CHANNEL
J. Biol. Chem., June 16, 2006; 281(24): 16230 - 16237.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
C. Danelon, E. M. Nestorovich, M. Winterhalter, M. Ceccarelli, and S. M. Bezrukov
Interaction of Zwitterionic Penicillins with the OmpF Channel Facilitates Their Translocation
Biophys. J., March 1, 2006; 90(5): 1617 - 1627.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
M. Vrouenraets, J. Wierenga, W. Meijberg, and H. Miedema
Chemical Modification of the Bacterial Porin OmpF: Gain of Selectivity by Volume Reduction
Biophys. J., February 15, 2006; 90(4): 1202 - 1211.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
S. Varma, S.-W. Chiu, and E. Jakobsson
The Influence of Amino Acid Protonation States on Molecular Dynamics Simulations of the Bacterial Porin OmpF
Biophys. J., January 1, 2006; 90(1): 112 - 123.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
H. Miedema, A. Meter-Arkema, J. Wierenga, J. Tang, B. Eisenberg, W. Nonner, H. Hektor, D. Gillespie, and W. Meijberg
Permeation Properties of an Engineered Bacterial OmpF Porin Containing the EEEE-Locus of Ca2+ Channels
Biophys. J., November 1, 2004; 87(5): 3137 - 3147.
[Abstract] [Full Text] [PDF]


Home page
Protein Eng Des SelHome page
A. Basle, R. Qutub, M. Mehrazin, J. Wibbenmeyer, and A. H. Delcour
Deletions of single extracellular loops affect pH sensitivity, but not voltage dependence, of the Escherichia coli porin OmpF
Protein Eng. Des. Sel., September 1, 2004; 17(9): 665 - 672.
[Abstract] [Full Text] [PDF]


Home page
Biophys. JHome page
A. Alcaraz, E. M. Nestorovich, M. Aguilella-Arzo, V. M. Aguilella, and S. M. Bezrukov
Salting Out the Ionic Selectivity of a Wide Channel: The Asymmetry of OmpF
Biophys. J., August 1, 2004; 87(2): 943 - 957.
[Abstract] [Full Text] [PDF]




HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
Copyright © 2003 by the Biophysical Society.