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Biophysical Journal 86:2827-2836 (2004)
© 2004 The Biophysical Society

Water Alignment, Dipolar Interactions, and Multiple Proton Occupancy during Water-Wire Proton Transport

Tom Chou

Department of Biomathematics and the Institute for Pure and Applied Mathematics, Los Angeles, California

Correspondence: Address reprint requests to Tom Chou, Dept. of Biomathematics and IPAM, Los Angeles, CA 90095-1766. Tel.: 310-206-2787; E-mail: tomchou{at}ucla.edu.

A discrete multistate kinetic model for water-wire proton transport is constructed and analyzed using Monte Carlo simulations. In the model, each water molecule can be in one of three states: oxygen lone-pairs pointing leftward, pointing rightward, or protonated (H3O+). Specific rules for transitions among these states are defined as protons hop across successive water oxygens. Our model also includes water-channel interactions that preferentially align the water dipoles, nearest-neighbor dipolar coupling interactions, and Coulombic repulsion. Extensive Monte Carlo simulations were performed and the observed qualitative physical behaviors discussed. We find the parameters that allow the model to exhibit superlinear and sublinear current-voltage relationships, and show why alignment fields, whether generated by interactions with the pore interior or by membrane potentials, always decrease the proton current. The simulations also reveal a "lubrication" mechanism that suppresses water dipole interactions when the channel is multiply occupied by protons. This effect can account for an observed sublinear-to-superlinear transition in the current-voltage relationship.




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F. Calvo and P. Dugourd
Folding of Gas-Phase Polyalanines in a Static Electric Field: Alignment, Deformations, and Polarization Effects
Biophys. J., July 1, 2008; 95(1): 18 - 32.
[Abstract] [Full Text] [PDF]




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