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Department of Chemistry, University of Calgary, Calgary AB, T2N 1N4, Canada
Correspondence: Address reprint requests to Dr. David T. Cramb, Dept. of Chemistry, University of Calgary, 2500 University Dr. NW, Calgary AB, T2N 1N4, Canada. Tel.: 403-220-8138; Fax: 403-289-9488; E-mail: dcramb{at}ucalgary.ca.
Two-photon excitation fluorescence cross-correlation spectroscopy (TPE-XCS) is a very suitable method for studying interactions of two distinctly labeled fluorescent molecules. As such, it lends itself nicely to the study of ligand-receptor interactions. By labeling the ligand with one color of fluorescent dye and the receptor with another, it is possible to directly monitor ligand binding rather than inferring binding by monitoring downstream effects. One challenge of the TPE-XCS approach is that of separating the signal due to the receptor from that of the ligand. Using standard organic fluorescent labels there is almost inevitably spectral cross talk between the detection channels, which must be accounted for in TPE-XCS data analysis. However, using quantum dots as labels for both ligand and receptor this limitation can be alleviated, because of the dot's narrower emission spectra. Using solely quantum dots as fluorescent labels is a novel approach to TPE-XCS, which may be generalizable to many pairs of interacting biomolecules after the proof of principle and the assessment of limitations presented here. Moreover, it is essential that relevant pharmacological parameters such as the equilibrium dissociation constant, Kd, can be easily extracted from the XCS data with minimal processing. Herein, we present a modified expression for fractional occupancy based on the auto- and cross-correlation decays obtained from a well-defined ligand-receptor system. Nanocrystalline semiconductor quantum dots functionalized with biotin (
em = 605 nm) and streptavidin (em = 525 nm) were used for which an average Kd value of 0.30 ± 0.04 x 10–9 M was obtained (cf. native system 
10–15). Additionally, the off-rate coefficient (koff) for dissociation of the two quantum dots was determined as 5 x 10–5 s–1. This off-rate is slightly larger than for native biotin-streptavidin (5 x 10–6 s–1); the bulky nature of the quantum dots and restricted motion/orientation of functionalized dots in solution can account for differences in the streptavidin-biotin mediated dot-dot binding compared with those for native streptavidin-biotin.
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