A kinetic and stochastic analysis of crossbridge-type stepping mechanisms in rotary molecular motors

¹ Biozentrum der Universitat Basel
² Weizmann Institute of Science

^* To whom correspondence should be addressed. E-mail: r.caplan{at}weizmann.ac.il.

Submitted on January 27, 2005
Revised on March 21, 2005
Accepted on 23 May 2005

	Abstract

The bacterial flagellar motor is generally supposed to be a stepping mechanism. The main evidence for this is based on a fluctuation analysis of experiments with tethered bacteria in which rotation frequency was varied by applying an external torque: the variance in time taken for a fixed number of revolutions was found to be essentially proportional to the inverse square of the frequency. This behavior was shown to characterize a Poissonian stepper. Here we present a rigorous kinetic and stochastic analysis of elastic crossbridge stepping in tethered bacteria. We demonstrate that Poissonian stepping is a virtually unachievable limit. To the extent that a system may approach Poissonian stepping it cannot be influenced by an externally applied torque; stepping mechanisms capable of being so influenced are necessarily non-Poissonian and exhibit an approximately inverse cubic dependence. This conclusion applies whatever the torsional characteristics of the tether may be, and contrary to claims, no perceptible relaxation of the tether following each step is found. Furthermore, the inverse square dependence is a necessary but not sufficient condition for Poissonian stepping, since a non-stepping mechanism, which closely reproduces most experimental data, also fulfills this condition. Hence the inference that crossbridge-type stepping occurs is not justified.

Key Words: Poissonian stepper, bacterial rotary motor, flagellar motion, fluctuation analysis, tethered bacteria