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Biophys J, April 1998, p. 1808-1820, Vol. 74, No. 4
Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720-3200 USA
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ABSTRACT |
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K+ channels can be occupied by multiple permeant ions that appear to bind at discrete locations in the conduction pathway. Neither the molecular nature of the binding sites nor their relation to the activation or inactivation gates that control ion flow are well understood. We used the permeant ion Ba2+ as a K+ analog to probe for K+ ion binding sites and their relationship to the activation and inactivation gates. Our data are consistent with the existence of three single-file permeant-ion binding sites: one deep site, which binds Ba2+ with high affinity, and two more external sites whose occupancy influences Ba2+ movement to and from the deep site. All three sites are accessible to the external solution in channels with a closed activation gate, and the deep site lies between the activation gate and the C-type inactivation gate. We identify mutations in the P-region that disrupt two of the binding sites, as well as an energy barrier between the sites that may be part of the selectivity filter.
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INTRODUCTION |
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In 1955 Hodgkin and Keynes proposed that
K+ channels have long pores that can simultaneously hold
multiple permeant ions as they flux in single file. This model has been
expanded to the point where it is now believed that before entering the
pore, each K+ ion in solution must first shed its waters of
hydration to pass through the narrowest region. As waters of hydration
are shed, K+ ions make intimate interactions with
pore-lining residues at what are thought to be discrete ion binding
sites (Hille, 1992
). Attempts to locate the structural determinants of
the K+ channel pore have provided evidence that the
P-region (original mutagenesis: MacKinnon and Yellen, 1990
; Hartmann et
al., 1991
; Yellen et al., 1991
; Yool and Schwarz, 1991
; Heginbotham et
al., 1992
; Kirsch et al., 1992
; toxin binding: MacKinnon and Miller, 1989
; MacKinnon et al., 1990
; Goldstein et al., 1994
; Aiyar et al.,
1995
; Hidalgo and MacKinnon, 1995
; Naranjo and Miller, 1996
; Ranganathan et al., 1996
), the internal S4-S5 loop (Isacoff, 1991
; Slesinger, 1993
), and S6 (Choi et al., 1993
; Isacoff et al., 1993
; Aiyar et al., 1994
; Lopez et al., 1994
; Taglialatela et al., 1994
) form
the pore. A flux ratio experiment indicates that at least four
K+ ion binding sites are located within these regions of
the Shaker potassium channel (Stampe and Begenisich, 1996
).
The narrowest region, which determines ion selectivity, is localized to
the highly conserved "signature sequence" within the P-region
(Heginbotham et al., 1992
, 1994
; cysteine probing: Kurz et al.,
1995
; Lu and Miller, 1995
; Pascual et al., 1995
). Residues in and near
this "signature sequence" have been identified that may form ion
binding sites (Yellen et al., 1991
; Heginbotham and MacKinnon, 1992
;
Kirsch et al., 1992
; Choi et al., 1993
; Ranganathan et al., 1996
) or act as barriers to ion movement (Harris and Isacoff, 1996
; Hurst et
al., 1996
).
The extremely fast (107-108/s) flux rate of
K+ through the pore has made it difficult to study
K+ ion binding at these sites. This problem was mainly
overcome in a study of the large-conductance calcium-activated (BK)
K+ channel by Neyton and Miller (1988a
, b
) through the use
of Ba2+. Ba2+, a permeant ion with the same
crystal diameter as K+, binds in the channel with a dwell
time 106 longer than that of K+, which is long
enough for its occupancy to be measured as a block of K+
flux. By examining the influence of K+ ions on
Ba2+ dissociation, Neyton and Miller defined both the
electrical location and affinity of three K+ ion binding
sites in the BK pore.
In this study, we have applied the method developed by Neyton and
Miller to characterize three permeant ion binding sites in the pore of
the voltage-gated Shaker K+ channel, which we
find to closely resemble those of the BK channel. We identified
pore-lining residues that appear to contribute to the formation of the
two deeper sites, and ask where the sites are located with respect to
the channel gates. Interestingly, we found that the deepest of the
three sites binds ions most tightly, is located between the activation
gate and the C-type inactivation gate, and can be occupied when either
of these gates is closed. In this respect, the C-type inactivation gate
is similar to the activation gate studied by Armstrong (Armstrong and
Hille, 1972
), in that it can close on a pore blocker that is bound in
the pore. These results are consistent with a mechanism of gating that
operates by pinching off access of the deep pore to the internal or
external solution.
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MATERIALS AND METHODS |
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Molecular biology
All experiments were performed on the N-terminal deleted (6-46)
ShB
(Hoshi et al., 1990
) channel and mutants that were made in this
background. The gene had been cloned into pBluescript (Stratagene) + vector. Mutant plasmids were generated by the
dut-ung-procedure as described by Sambrook et al. (1989)
.
Plasmids were transformed into DH5
cells, and dsDNA was isolated by
an alkaline lysis procedure. Mutant plasmids were sequenced by the
Sanger dideoxy method. Dimethyl capped cRNA was prepared from mutant
and wild-type plasmids by in vitro runoff transcription
reactions, using either Ambion (Megascript) or Stratagene transcription
kits with T7 RNA polymerase after linearization with
HindIII. RNA pellets were resuspended in ultrapure water
(Specialty Media, Laballette, NJ), and yields were determined by
formaldehyde-agarose gel electrophoresis. Aliquots were stored at
80°C until needed for oocyte injection.
Electrophysiology
Stage V and VI Xenopus laevis oocytes were isolated, collagenased (Worthington Biochemical Corp.), and stored at 18°C in MBSH solution. MBSH contained (in mM) 88 NaCl, 1.0 KCl, 2.4 NaHCO3, 10 HEPES (pH 7.5 with NaOH), 0.82 MgSO4 (7 H2O), 0.33 Ca (NO3)2 (4 H2O), 0.41 CaCl2 (2 H2O). Pyruvate (2.5 mM final concentration), penicillin-streptomycin, gentamicin, 0.5 g bovine serum albumin (per liter), and 0.5 g Ficoll (per liter) were also added. After isolation, 50-100 nl of cRNA was injected into each oocyte, and recordings were made 2-6 days after injection.
Electrodes (0.2-1 m
) were pulled on a model P-87 Flaming/Brown
micropipette puller (Sutter Instrument Company) and filled with 3 M
KCl. After recording, any drift of the electrode voltage offset
relative to the bath solution was noted upon removal of the voltage
electrode from the oocyte. Recordings with over 5-mV drift were
excluded. All external solutions contained 10 mM HEPES (pH to 7.0 with
either KOH or NaOH, depending on which was the major cation in
solution) and 0.41 mM CaCl2. The 2 mM KCl solution contained (in mM) 112 NaCl and 2 KCl. The 112 mM KCl solution contained
112 mM KCl. The 10 mM Ba2+ "low K+"
solution contained (in mM) 10 BaCl2, 2 KCl, and 92 NaCl.
The 10 mM Ba2+ "high K+" solution contained
10 mM BaCl2 and 92 mM KCl. The 0 mM K+ solution
contained 112 mM NaCl. All recordings were made at room temperature
(21-23°C).
Oocytes were typically held at
80 mV, except where stated otherwise
in the text, and stepped to test potentials. The duration of test
voltages was 800 ms for the experiments measuring open channel
Ba2+ dissociation and 30 ms for experiments containing both
closed and open channels (closed/open). Leak currents were subtracted on line with a P/4 subtraction protocol for the closed/open channel experiments. No leak subtraction was done for the open channel Ba2+ dissociation experiments. Data were acquired with an
Axoclamp-2A amplifier (Axon Instruments, Foster City, CA), a TL-1 AD/DA
computer interface (Axon Instruments, Foster City, CA), and an IBM 486 AST PC. Data were sampled at 1 or 5 kHz and filtered first through a
1-pole low-pass filter (Axoclamp-2A) at 30 kHz, and then filtered again
at 200 Hz or 1 kHz through an 8-pole Bessel filter (Frequency Devices).
Data were analyzed with pClamp software (Axon Instruments). To
determine the time course of Ba2+ wash-out from open
channels in the presence of significant C-type inactivation (such as
with 0 Kout+), a control trace acquired in the absence
of Ba2+ was subtracted from the experimental trace
exhibiting Ba2+ unbinding.
Model of Ba2+ open channel dissociation
The voltage dependence of open-channel Ba2+ dissociation was modeled with a single-file three permeant ion binding site model (Fig. 3 C). Site 1 is the "lock-in" site and the shallow fast equilibrating Ba2+ block site. Site 2 is the low-affinity "enhancement" site. Site 3 is the deep Ba2+ binding site. The total off rate for Ba2+ from site 3 of open channels is equal to the off rate in the outward direction plus the off rate in the inward direction:
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(1) |
v,c is the off rate for Ba2+ in
the outward direction, and
v,c is the off rate for
Ba2+ in the inward direction. Both of these rate constants
are dependent on membrane voltage (v) and external
K+ concentration (c).
The Ba2+ off rate in the outward direction can be expressed as
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(2) |
0 is the outward off rate at 0 mV,
and 
off is the electrical distance from the
Ba2+ binding site to the rate-limiting barrier to
Ba2+ exit in the outward direction. F, V, R, and
T have their usual meanings. The same equation written with
the fractional states occupancies, fx, expressed
explicitly in terms of binding constants, becomes
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(3) |
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1 is the
electrical distance for K+ to bind to site 1 from the
external solution (fixed at 0.18 based upon the
of fast
Ba2+ block; see below), k2(0 mV) is
ratio of the number of channels with site 1 occupied by K+
to the number of channels with K+ occupying site 2 at 0 mV,
2 is the electrical distance from site 1 to site 2, k3(0 mV) is the dissociation constant at 0 mV membrane potential for K+ to bind at site 1 when there is a
K+ ion at site 2, and
3 is the electrical
distance for K+ to bind at site 1 when site 2 is occupied
by a K+ ion. For simplicity,
1 =
3.
The rate of Ba2+ dissociation in the inward direction can be expressed as
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(4) |
0 is the dissociation rate at 0 mV in the
inward direction for Ba2+ when site 1 or site 2 is occupied
by K+ or when both sites are unoccupied by K+.
We set this value to zero because there is little inward dissociation with 0 mM Kout+ and 2 mM Kout+ (Fig. 2
C).
'0 is the Ba2+ off
rate in the inward direction at 0 mV when sites 1 and 2 are occupied by
K+. 
'off is the electrical distance from
the Ba2+ ion binding site to the rate-limiting barrier to
its exit in the inward direction. The same equation written with the
fractional states occupancies, fx, expressed
explicitly in terms of binding constants, becomes
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(5) |
0 (6.77 s
1),

off (0.355),
1 (0.18), and
3 (0.18).
0 and 
off were determined from experiments, respectively, as the 0 mV off rate
and 
off for Ba2+ with 0 mM
Kout+.
1 was assumed to be 0.18, the
voltage dependence of external Ba2+ binding to its fast
site (see below), which is site 1 in the model. For simplicity,
1 =
3. The values for the free parameters derived from a fit of the model to the data (Fig. 3 B) were
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Model for Ba2+ block
The calculation of the voltage dependence of Ba2+ unblock in Fig. 5 C required a model for Ba2+ blockade. In our model channels are in one of three possible states:
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,
,
, and
are rate
constants. Differential equations for the disappearance of these states
can be written and solved for at equilibrium. This yields the following
equations:
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(6) |
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(7) |
fast is the electrical distance to site 1 from the external solution,
13 is the electrical
distance between site 1 and site 3, Kdfast is the Kd(0
mV) for Ba2+ at site 1, and K is
the 0 mV equilibrium constant for Ba2+ movement between
sites 1 and 3. Using Eq. 6, one can calculate the fraction unblocked
for site 1:
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fast (0.18). The fast component of block was measured as
in Fig. 5 A (fraction unbound of the fast component = 1
fast). Obtaining
13 and the
Kd(0 mV) for site 3 is more complex
and requires calculation of the total fraction of unblocked channels.
Using Eqs. 6 and 7, the total fraction of unblocked channels is
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(8) |
slow is
fast +
13,
which is the electrical distance between the external solution and site
3. The total fraction of unblocked channels was measured as in Fig. 5
A (total unblocked = 1
fast
slow). This
data were plotted against step potential and fit with Eq. 9 (Fig. 5
C; total unblocked). The fit gives the values for
Kdslow (1.11 mM) and
slow (0.38), using the values of
Kdfast and
fast
obtained above from the fit of Eq. 8 to the observed fraction unblocked
of the fast component. For simplicity, we have ignored K+
binding to sites 1 and 3. This experiment could not be carried out in
K+-free solutions because we find that Ba2+
increases current in K+-free solutions before blocking
conductance (data not shown).
To compare the effect of the mutations on the fast and slow components
of Ba2+ block (Fig. 7), the fractions unblocked for the
fast and slow components were calculated for both wild-type and mutant
channels as follows. The fraction unblocked for the fast component was calculated as above (fraction unblocked fast = 1
fast;
Fig. 5 A). The fraction unblocked of the slow component was
taken as the fractional amount of current at steady state of the slow
component divided by the amount of current after fast block (fraction
unblocked slow = unblocked/slow + unblocked; Fig. 5
A).
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RESULTS |
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Open-channel Ba2+ dissociation
At negative voltages, external Ba2+ entered the pore
of N-terminal deleted Shaker channels (ShB
; Hoshi et al.,
1990
) and remained bound after wash-out of Ba2+ from the
external solution, as measured by a depolarizing step after the
wash-out (Fig. 1 A). This
depolarization evoked current from a fraction of the channels at the
normal opening rate, whereas the bulk of the current rose much more
slowly, consistent with the idea that the majority of channels were
open, but blocked by Ba2+, and that they then slowly became
unblocked (Fig. 1 B). The open channel Ba2+ off
rate was taken as the reciprocal of the time constant for the slow
rising phase, which was fit well by a single exponential. In all of our
analysis, we assume that the channel gates normally with a
Ba2+ bound in the pore (but see Miller et al., 1987
; Neyton
and Pelleschi, 1991
).
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These observations in the ShB
channel are consistent with those
found in the delayed rectifier K+ channel of squid giant
axon (Armstrong et al., 1982
), in which external Ba2+
enters the closed channel at negative voltages, binds at a deep high-affinity site, and is prevented from dissociating inwardly by the
closed activation gate and outwardly by the electric field. These
results are also similar to observations in the BK channel, where
Ba2+ can be trapped in the channel when closure of the
activation gate prevents its inward dissociation (Miller, 1987
).
Dependence of open-channel Ba2+ dissociation on voltage and external K+
In 0 mM [Kout+], the rate of open channel
Ba2+ dissociation increased with increasingly depolarized
step potentials (Fig. 2, A and
C), suggesting that at positive potentials Ba2+
dissociated primarily in the outward direction. The electrical distance
from the Ba2+ ion binding site to its rate-limiting barrier
for exit,
off (Woodhull, 1973
), was 0.35, indicating
that the binding site lies deep in the membrane electric field.
Increasing [Kout+] from 0 mM to 2 mM slowed
Ba2+ dissociation at all voltages studied, with little
effect on
off (
off = 0.373; Fig. 2,
B and C). The slowing of Ba2+
dissociation by external K+ (by threefold at 0 mV) suggests
that a more external K+ ion binding site must be empty for
outward Ba2+ dissociation. This behavior is very similar to
that described for K+ occupancy of the high-affinity
"lock-in" site seen in BK channels (Neyton and Miller, 1988a
).
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Ba2+ dissociation was very different when the external
concentration of [K+] was raised to 112 mM. At this high
external K+ concentration, the rate of Ba2+
dissociation slowed with increased depolarization between +20 mV and
+100 mV, and then increased at more positive potentials (Fig.
3, A and B). This
suggests that in 112 mM [Kout+], Ba2+ has
a propensity to dissociate in the inward direction, but at extreme
depolarizations the electric field becomes strong enough to reverse
this trend and drive Ba2+ outward. This behavior is very
similar to that described for the "enhancement" site in BK channels
that binds K+ with low affinity (Neyton and Miller, 1988b
).
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These observations indicated that, like BK, the deep pore of Shaker has three binding sites that are in ready exchange with the external solution: a deep Ba2+ binding site and two shallower sites, one with low affinity ("enhancement" site) and the other with higher affinity ("lock-in" site) for K+ in the Ba2+ bound channel.
Ion selectivity of the "lock-in" site
To examine the selectivity of the "lock-in" site, the 0 mV
Ba2+ off rate was determined with different external ions
at the low (2 mM) concentration (Fig. 4
A). Compared to 112 mM Naout+, the 0 mV
Ba2+ off rate was not slowed by 2 mM NH4+,
but was slowed threefold by 2 mM K+, and sevenfold by 2 mM
Rb+. Replacement of 112 mM Na+ with 112 mM
NMDG+, a large cation that presumably does not bind to the
pore, increased the Ba2+ off rate by 1.5-fold. This
indicates that Na+ itself bound to the "lock-in" site,
but so weakly that it had an effect smaller than that of K+
at 56 times the concentration. The affinity series for the
"lock-in" site was, therefore, Rb+ > K+
Na+ > NMDG+. This series is identical to
the BK channel studied by Neyton and Miller (1988a)
. The high
selectivity of the "lock-in" site for permeant ions suggests that
this site lies in the pore. Changing the external ion concentration had
little effect on
off, except in the case of
Rb+ (Fig. 4 B).
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Baout2+ (2 mM) was also found to bind to the
"lock-in" site and slow the outward dissociation of a second
Ba2+ bound at the deep binding site (Fig. 4 C).
In 2 mM external Ba2+, Ba2+ can associate with
its deep site in channels that are not blocked, which should accelerate
the slow rise phase of current, because
= 1/[Ba2+]
+
(where
= on rate and
= off rate) compared to 0 Ba2+ during the washout, where
off = 1/
.
However, because the rise of current was slower in 2 mM
Baout2+ than that in 2 mM Kout+, it
seems instead that a Ba2+ ion located at the "lock-in"
site was able to slow the dissociation of a second Ba2+ at
the deep site. This effect was similar to the effect of monovalent ions
at low concentration, in that greater depolarization accelerated Ba2+ dissociation (
= 406 ± 28.0 ms
Vstep = +20 mV n = 8;
= 145 ± 11.1 s Vstep = +80 mV
n = 7). This suggests that external Ba2+,
like external K+, can bind at the "lock-in" site and
block outward dissociation of a second Ba2+ bound at the
deep high-affinity blocking site.
Electrical location of Ba2+ binding sites
To determine the relative locations within the electric field of
the two Ba2+ binding sites, we examined the rates with
which external Ba2+ reached and dissociated from them.
Short repeated depolarizations applied during the wash-in of 10 mM
external Ba2+ revealed two kinetic components of block
onset, each representing about half of a total of 80% block (Fig.
5 A). The fast component was
faster than the rate of exchange of Ba2+ in the bath, and
was rapidly reversed after short exposures to Ba2+ (Fig. 5
B), whereas longer exposures that brought the slow component to steady-state reversed more slowly. Wash-out after a long exposure contained one component. These observations are consistent with those
of Hurst et al. (1995)
, who suggested that Ba2+ binds to
two sites, a shallow, rapidly equilibrating site and a deep, slowly
equilibrating site, which are sequential in the pore (i.e., a shallow
fast site and a deep slow site). This idea was supported by an
examination of the dependence of the two components on the step
potential. The electrical distance from the external solution to the
Ba2+ ion binding sites (
) was smaller for the fast site
(0.18) than for the slow site (0.38) (Fig. 5 C). Because the
fast Ba2+ block site is situated shallowly in the membrane
electric field, we concluded that this is likely to be the
"lock-in" site, and because the slow block site lies deep in the
membrane electric field, we concluded that this is likely to be the
deep Ba2+ binding site. The
for the deep site (0.38) is
very close to the
off (0.37) observed in the open
channel off rate. This indicates that the majority of the voltage
dependence for Ba2+ binding is in the off rate at this
site.
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Closed channel unblock of wild-type ShB
The fact that the fraction unblocked for both fast and slow block
increased with greater step depolarization indicates that significant
Ba2+ dissociation occurs during the brief step (i.e., from
the open state). Therefore the total Ba2+ dissociation rate
reflects unbinding from both open channels during the step and closed
channels during the interval between steps. To estimate the closed
channel Ba2+ off rate from its deep binding site, the
duration of the step potential was decreased over a range from 90 to 20 ms (Fig. 5 D). As the step duration is decreased, the
contribution of open channels to the total Ba2+ off rate
(open plus closed channels) is decreased. Extrapolation of the linear
regression fit of the Ba2+ off rate versus step duration to
0 ms gives the upper limit of the Ba2+ off rate for closed
channels at the
80 mV holding potential. This value is the upper
limit, because some Ba2+ dissociation will occur during the
tail. This value was 60-fold slower than the extrapolated value of the
open channel off rate from the deep site at
80 mV. This suggests
either that opening of the activation gate admits internal
K+, which knocks Ba2+ in the outward direction,
accelerating the exit of Ba2+ from the channel, or that a
conformational change in the pore caused by opening lowers an energetic
barrier that is rate-limiting for outward Ba2+
dissociation.
C-type inactivation traps Ba2+ in the pore of wild-type channels
Recent studies have suggested that C-type inactivation occurs by
the squeezing shut of the outer mouth of the pore (Yellen et al., 1994
;
Liu et al., 1996
) after the evacuation of a K+ binding site
with an affinity of 2 mM (Baukrowitz and Yellen, 1995
, 1996
). We asked
whether the C-type inactivation gate is analogous to the activation
gate (Armstrong and Hille, 1972
) in pinching off the outer end of the
conduction pathway, rather than producing a general collapse of the
pore. We tested this by loading Ba2+ into its deep binding
site, inducing C-type inactivation, washing external Ba2+
away, and then examining whether conduction returned with the kinetics
of recovery from C-type inactivation, or with the relatively slower kinetics of Ba2+ dissociation.
Channels were blocked by exposure to external Ba2+, and the
membrane was held at 0 mV to induce C-type inactivation.
Ba2+ was then removed from the external solution, and the
membrane was held at 0 mV for an additional 10 min. This 10-min
wash-out period represents 4000 times the time constant of open channel Ba2+ dissociation at 0 mV (Koff 0 mV = 6.65 s
1). This should permit all of the
channels to recover from block, unless closure of the C-type
inactivation gate prevents dissociation of the bound Ba2+.
After the wash-out period, the membrane was returned to
80 mV and
stepped for short pulses to 0 mV, as before, to test the conducting
state of the channels. If C-type inactivation does not retard outward
Ba2+ dissociation at all, the channels should all lose
their Ba2+ during the 10-min wash-out, and the current
should recover with the kinetics of recovery from C-type inactivation
(
= 12.9 ± 1.05 s, n = 11; Fig.
6). Instead, after the 10-min wash-out of Ba2+, channels recovered monoexponentially with a
= 63.8 ± 4.5 s (n = 11), fivefold
(p < 1 × 10
9) more slowly than
recovery from C-type inactivation alone. We observed a similar rate of
63.2 ± 4.6 s (n = 7) when we monitored recovery with the same protocol, but omitting the long step to 0 mV
that induced C-type inactivation. This demonstrates that the ShB
channel can close its C-type inactivation gate with Ba2+
occupying the deep site and trap Ba2+ in the pore.
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Mutations in the P-region affect the binding of Ba2+
In an effort to identify the molecular constituents of the
Ba2+ and K+ binding sites, mutations were made
in the P-region of ShB
. We focused our mutagenesis on the polar
residues in the K+ channel "signature sequence"
(Heginbotham et al., 1994
). Not all mutants produced functional
channels. Of the mutations made, T439Y, Y445C, D447N, and D447T did not
give functional homomultimers, whereas T441C, V443G, and Y445F did.
Mutations T441C and Y445F preserved selectivity for K+ over
Na+ (not shown), whereas V443G destroyed channel
selectivity, as has been shown earlier (Heginbotham et al., 1994
).
Cysteines substituted at each of these positions (T441, V443, and Y445)
have been shown earlier to be accessible to either internal or external
thiol reagents, suggesting that the native residues face the permeation pathway (Lu and Miller, 1995
; Pascual et al., 1995
).
T441C greatly reduced the slow component of Ba2+ block
(from 63% to 19%, p < 10
5; Fig.
7 A), whereas the amount of
fast block remained unaffected. This suggests that the external end of
the channel, where fast block occurs, was not altered by the mutation,
but that a region deep in the pore, where slow block occurs, was
affected. The fact that the residual slow component of wash-out of
Ba2+ was twofold faster (p = 0.046) and the
fraction slow block was much less for the mutation than for wild-type
ShB
, indicates that the Ba2+ affinity for the deep
binding site was decreased because of destabilization of
Ba2+ binding.
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V443G accelerated the kinetics of block without altering the total fraction bound (Fig. 7 B). One possibility is that, unlike T441C, which altered binding of Ba2+ at its deep site, V443G left binding normal, but eased the entry and exit of Ba2+ to and from the deep site, by reducing an energy barrier to Ba2+ movement. However, we cannot distinguish this model from a more complex model in which both the deep and shallow sites are altered, with an increased affinity of the shallow site and a decreased affinity of the deep site.
C-type inactivation with Ba2+ in the pore of Y445F channels
Y445F had a fast component of block similar to wild-type ShB
and an increased sensitivity to slow block (Fig. 7 C). This increase in affinity was due to a dramatic (60-fold, p < 0.01) slowing of Ba2+ dissociation, evident in the
wash-out. This mutant also exhibited an unusually fast C-type
inactivation (Fig. 8 A).
Recovery from this inactivation was slow enough so that, unlike
wild-type ShB
, 5-s intervals at
80 mV were insufficient to prevent
accumulation of inactivation during the repeated 30-ms steps (Fig. 8
B). This raised the possibility that the apparent increase
in the Ba2+ affinity of site 3 is actually due to trapping
of Ba2+ at that site by closure of the C-type inactivation
gate. We examined this possibility further.
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Increasing external K+ from 2 mM to 112 mM slowed C-type
inactivation in Y445F by sixfold (Fig. 8 A), comparable to
the effect observed in wild-type ShB and ShB
channels (Lopez-Barneo
et al., 1993
; Baukrowitz and Yellen, 1996
). This indicates that the
K+ site that influences C-type inactivation in Y445F is
intact. To determine if the fast closure of the C-type inactivation
gate in Y445F was responsible for the slow time course of
Ba2+ wash-out rate, we compared Ba2+ wash-out
in low and high external [K+]. If the slow wash-out of
Ba2+ from Y445F channels was due to the channel C-type
inactivating on Ba2+, then Ba2+ wash-out should
be faster in 112 mM Kout+, where C-type inactivation is
slowed. Indeed, the rate of Ba2+ wash-out was 14-fold
(p = 2 × 10
2) faster when external
K+ was raised to 112 mM compared to 2 mM (Fig. 8
C).
The increase in the rate of Ba2+ dissociation in high
Kout+ could not have been due to enhanced
Ba2+ inward dissociation, because dissociation was faster
at +80 mV than at +20 mV (Fig. 9
A). This voltage dependence indicates that the bulk of the
Ba2+ dissociations for Y445F in 112 mM
Kout+ were in the outward direction. This is in
contrast to wild-type ShB
channels, where 112 mM
Kout+ accelerates inward dissociation (Fig. 3
B). This result suggests that the "enhancement" site is
disrupted in Y445F channels, whereas the preservation of fast
Ba2+ block, as shown above, suggests that the "lock-in"
site remains intact.
|
Mutation Y445F lowers the affinity of a K+ ion binding site
To test the above interpretation that Y445F disrupts the
"enhancement" site, we compared wild-type ShB
and Y445F with
respect to the onset of Ba2+ block in high external
K+. This test was motivated by the results of Hurst et al.
(1995)
, which showed that high external K+ eliminates the
slow component of Ba2+ block and attenuates the fast
component in N-terminal deleted ShH4 channels, an observation that we
repeated (Fig. 9 B). This result suggests that high
K+ occupancy of the "enhancement" site or the deep
Ba2+ binding site prevents external Ba2+ from
reaching the deep site. In contrast to wild-type ShB
, Y445F preserved both the fast and slow components of block in 92 mM Kout+, although both were reduced in magnitude and in
rate compared to 2 mM Kout+ (compare Figs. 7
C and 9 C). This indicates that in Y445F channels Ba2+ can reach its deep site, even in 92 mM
Kout+, and is consistent with a decreased occupancy of
a low-affinity K+ binding site in Y445F channels. Because
the fast and slow Ba2+ binding sites were intact in Y445F
channels (although the affinity of the deep site could not be
ascertained because of the trapping by C-type inactivation), the
low-affinity K+ binding site affected by this mutation
seemed most likely to be the "enhancement" site.
| |
DISCUSSION |
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Ion binding sites
Our results on the Shaker channel are consistent with
the existence of at least three single-file permeant ion binding sites in the pore that can be simultaneously occupied. All of these sites are
in exchange with the external solution when the activation gate is
closed. As shown earlier for BK channels (Neyton and Miller, 1988a
, b
),
we find for Shaker that low concentrations of external permeant ion slow outward Ba2+ dissociation, and high
concentrations drive Ba2+ inward, except at very strong
depolarizations. Neyton and Miller referred to these
two permeant ion effects as "lock-in," which they attributed to block of the pathway for Ba2+ outward
dissociation from its deep site due to occupancy of a distal site, and
"enhancement," which they attributed to repulsion of
Ba2+ in the inward direction out of its binding site due to
occupancy of a nearby site. Such repulsion of a blocker by a permeant
ion has also been observed in BK channels by other workers (Yellen, 1984
) and in the delayed rectifier of the squid giant axon (Bezanilla and Armstrong, 1972
). Because the repulsion is mutual, binding of the
permeant ion to the "enhancement" site is unfavorable when the deep
site is occupied by Ba2+, so that this only occurs at high
external concentration of permeant ion. A simple model that
incorporates these principles accounted well for the voltage dependence
of open channel Ba2+ dissociation in three different
external K+ concentrations (see below).
Our results indicate that the "lock-in" site is highly selective
for permeant ions, suggesting that it lies within the permeation pathway. Because it can also be occupied by Ba2+, it is
most likely the shallow site (
= 0.18) that rapidly equilibrates with extracellular Ba2+ before Ba2+ goes deeper
into the pore and binds tightly to its deeper site (
= 0.38). This
is in agreement with the earlier results of Hurst et al. (1995)
. Both
the electrical location of the "lock-in" site, and the site's
affinity for K+ predicted from the fit of our three binding
site model (Kd = 0.75 mM; see below), are
quantitatively similar to measurements on BK channels (
= 0.15, Kd = 0.3 mM; Neyton and Miller, 1988a
, b
). (It
should be noted that in our experiments and in the studies of Neyton
and Miller, the affinity of the "lock-in" site is measured with a
Ba2+ already bound to the deep site. This might cause the
affinity of the K+ site to be less than if Ba2+
was not present because of any repulsion between the ions; however, we
do not think this is so. See below.) The selectivity series of the
"lock-in" site is also similar between these channels
(Rb+ > K+ > NH4+), except
that Shaker appears to be more selective against
Na+. Replacing 112 mM Naout+ with 112 mM
NMDGout+ had little effect on the Ba2+ off
rate for ShB
, whereas Neyton and Miller (1988a)
observe a fourfold
increase in the Ba2+ off rate when Na+ is
replaced with NMDG+.
The K+ affinity of the "enhancement" site is also
similar between these two channels, requiring over 100 mM external
K+ to raise occupancy to the point that inward
Ba2+ dissociation is favored at modest depolarizations. The
voltage dependence of the off rate for outward and inward
Ba2+ dissociation was also similar for the two channels.
For outward dissociation in 0 mM Kout+, the
off for BK was 0.42 and the
off for
ShB
was 0.35. For inward dissociation the
off was
0.32 for BK (150 mM Kout+) and 0.34 for ShB
(112 mM
Kout+). These results demonstrate that there is a high
degree of conservation of pore structure between these subfamilies of
K+ channels.
Three ion binding site model
A simple three binding site model (see Materials and Methods) of
the Shaker pore, of the kind proposed qualitatively by
Neyton and Miller for the BK channel (1988a
, b
), accounted well for the observed voltage dependence of open channel Ba2+
dissociation in the three different external K+
concentrations. The "lock-in" site has the experimentally
determined electrical position of the fast Ba2+ site of
0.18. The "enhancement" site lies between the "lock-in" site
and the deep, slow Ba2+ binding site, which has the
experimentally determined electrical position of 0.38.
Wash-in and prolonged wash-out of external Ba2+ from closed channels at negative voltage leaves one Ba2+ loaded in the deep Ba2+ site, whereas Ba2+ is washed out of the "lock-in" and "enhancement" sites, where it binds weakly. (Ba2+ is held weakly at the "lock-in" site because of its rapid equilibration (Fig. 5 A), and repulsion by Ba2+ at the deep site prevents a second Ba2+ from binding tightly at the nearby "enhancement" site.) Therefore, when the external solution is devoid of external K+, the "lock-in" and "enhancement" sites are vacant. At 2 mM external K+ concentration, K+ occupies the "lock-in" site a large fraction of the time, blocking the pathway for outward Ba2+ dissociation from the deep site, so that the Ba2+ must wait until the "lock-in" site is vacated before it can exit. Repulsion by Ba2+ at its deep site prevents K+ from occupying the "enhancement" site at low external [K+]out. However, when external K+ concentration is raised to 112 mM (56-fold higher), the "enhancement" site becomes significantly occupied. The mutual repulsion between the K+ at the "enhancement" site and Ba2+ at its deep site drives Ba2+ in the inward direction.
Simultaneous fits of the model to the curves relating open channel
Ba2+ off rate to voltage in 0, 2, and 112 mM
[K+]out fit the data well (Fig. 3 B,
solid lines). The affinity of the "lock-in" site for
K+ predicted from fits of our three binding site model
(Kd = 0.75-0.80 mM) agrees well with that
measured BK channels (Kd = 0.3 mM; Neyton and
Miller, 1988a
).
The C-type inactivation gate is external to the deep Ba2+ binding site
Armstrong et al. (1982)
showed that Ba2+ can enter the
closed delayed rectifier K+ channel from the outside and
bind with high affinity at its blocking site. Armstrong et al. also
showed that internal Ba2+ was prevented from access to its
binding site when the activation gate was closed. This indicated that
activation gating operates by opening and closing access of the pore to
ions in the internal solution. We find here that another gate, the
C-type inactivation gate, can function in a similar manner from the
opposite end of the pore. Access to the external solution of a
Ba2+ ion bound at its deep site in the pore was cut off by
closure of the C-type inactivation gate. This indicates that the C-type inactivation gate pinches off the permeation pathway between the deep
Ba2+ site and the external mouth of the pore, and suggests
that C-type inactivation does not produce a general collapse of the
pore. The rearrangement that brings residues in the P-S6 of one subunit closer to those of another when the C-type inactivation closes (Liu et
al., 1996
) seems to therefore represent a local structural event.
Recent work by Molina et al. (1997)
suggests that the pinching off is
internal to residue T449, which places the C-type inactivation gate
between T449 and T441, the deep Ba2+ binding site.
The rate of C-type inactivation depends on the external concentration
of K+ (Lopez-Barneo, 1993
; Baukrowitz and Yellen, 1995
,
1996
). Using organic blockers with differing bound times at the
internal mouth of the channel, Baukrowitz and Yellen (1996)
showed that
block of outward current flow increased the sensitivity of C-type
inactivation to external K+