Quantitative orientation measurements by attenuated total
reflectance (ATR) infrared spectroscopy require the accurate knowledge of the dichroic ratio and of the mean-square electric fields along the
three axes of the ATR crystal. In this paper, polarized ATR spectra of
single supported bilayers of the phospholipid dimyristoylphosphatidic acid covered by either air or water have been recorded and the dichroic
ratio of the bands due to the methylene stretching vibrations has been
calculated. The mean-square electric field amplitudes were calculated
using three formalisms, namely the Harrick thin film approximation, the
two-phase approximation, and the thickness- and absorption-dependent
one. The results show that for dry bilayers, the acyl chain tilt angle
varies with the formalism used, while no significant variations are
observed for the hydrated bilayers. To test the validity of the
different formalisms, s- and p-polarized ATR spectra of a 40-Å lipid
layer were simulated for different acyl chain tilt angles. The results
show that the thickness- and absorption-dependent formalism using the
mean values of the electric fields over the film thickness gives the
most accurate values of acyl chain tilt angle in dry lipid films.
However, for lipid monolayers or bilayers, the tilt angle can be
determined with an acceptable accuracy using the Harrick thin film
approximation. Finally, this study shows clearly that the uncertainty
on the determination of the tilt angle comes mostly from the
experimental error on the dichroic ratio and from the knowledge of the
refractive index.
 |
INTRODUCTION |
Fourier transform infrared (FTIR) spectroscopy
has been widely used for the study of biological molecules (Mantsch and
Chapman, 1996
) since the shape, intensity, and position of infrared
bands are sensitive to the structure and motion of the molecular
species. In addition, due to the fact that the absorption of the
infrared radiation depends on the angle between the polarization of the incident radiation and the transition moment of a given vibration, it
is also possible to characterize the molecular orientation in samples
deposited on different types of substrates by means of polarized FTIR
spectroscopy. For that purpose, different techniques have been used,
namely polarized transmission spectroscopy (Rothschild and
Clark, 1979
; Chollet and Messier, 1982
; Vogel et al., 1983
), infrared reflection absorption spectroscopy (IRRAS) (Allara and Swallen, 1982
; Rabolt et al., 1983
; Umemura et al., 1990
; Blaudez et
al., 1998
), polarization-modulation (PM) IRRAS (Golden et al., 1981
;
Buffeteau et al., 1991
; Blaudez et al., 1993
), and polarized attenuated
total reflection (ATR) spectroscopy (Harrick, 1967
; Fringeli and
Günthard, 1981
; Kimura et al., 1986
; Ahn and Franses, 1992
). ATR
spectroscopy is a very effective technique for studying biological
materials because the sample can be readily oriented on the ATR crystal
and kept in an aqueous environment. This sampling technique has been
used extensively to study proteins (Goormaghtigh et al., 1990
),
phospholipid multilayers and monolayers (Fringeli and Günthard,
1981
; Okamura et al., 1985
; Brandenburg and Seydel, 1986
; Lotta et al.,
1988
), lipid-protein complexes (Okamura et al., 1986
; Brauner et al.,
1987
; Cornell et al., 1989
; Frey and Tamm, 1991
; Subirade et al., 1995
;
Axelsen et al., 1995a
), and membrane receptors (Baenziger et al.,
1992
). Even though polarized transmission and IRRAS results can be
interpreted in a straightforward manner, it is not the case for ATR
spectroscopy, since the electric field amplitudes of the infrared
evanescent wave along the three coordinates of the ATR crystal have to
be calculated to determine the order parameter from the linear
dichroism of the infrared bands (Harrick, 1967
; Mirabella and Harrick,
1985
).
Some thirty years ago, Harrick (1967)
derived analytical equations to
calculate these electric field amplitudes for the limiting cases known
as the thin-film approximation and the thick-film approximation.
According to the Harrick thin-film approximation, the film thickness is
very small compared to the penetration depth of the evanescent wave and
the electric field amplitudes calculated are those at the surface of
the ATR crystal. Thin films of phospholipids and proteins deposited
either by the Langmuir-Blodgett technique (Lukes et al., 1992
; Axelsen
et al., 1995a
, b
; Subirade et al., 1995
), by evaporation from organic
solvent (Fringeli and Günthard, 1981
; Brauner et al., 1987
), or
by fusion of small unilamellar vesicles of phospholipids (Frey and
Tamm, 1991
) have often been considered as Harrick thin films.
Recently, the thin film approximation has been questioned because it
failed to give reliable results concerning the orientation of the
helical polypeptides poly-
-benzyl-L-glutamate and
poly-
-benzyl-L-aspartate, and the bee venom toxin
melittin (Citra and Axelsen, 1996
). It was then proposed that for very
thin films, such as supported lipid monolayers and bilayers, the
optical constants of the film are highly perturbed by the optical
properties of the adjacent media and that the optical properties of the
film should be neglected. This model, named the two-phase approximation
(Citra and Axelsen, 1996
), had already been used in the literature by
other investigators (Higashiyama and Takenaka, 1974
; Takenaka et al.,
1980
; Cropek and Bohn, 1990
; Jang and Miller, 1995
). With the two-phase
approximation, Citra and Axelsen (1996)
have obtained good results for
the orientation of poly-
-benzyl-glutamate deposited on a hydrophobic
substrate that were in agreement with those obtained by other
spectroscopic techniques. In addition, this approach seems to eliminate
the divergence between the results obtained in the controversial case of melittin bound to lipid membranes (Vogel et al., 1983
; Brauner et
al., 1987
; Frey and Tamm, 1991
). However, the Harrick thin film
approximation has been used successfully for orientation measurements
of dry phospholipid monolayers (Subirade et al., 1995
; Labrecque, 1995
)
and for the orientation of dimyristoylphosphatidylcholine (DMPC) in
supported DMPC-gramicidin monolayers deposited on a hydrophobic crystal
covered with water (Axelsen et al., 1995a
).
The origin of the problems encountered with quantitative orientation
measurements using polarized ATR spectroscopy may come from the
miscalculation of the mean-square electric field amplitudes. As pointed
out recently by Axelsen and Citra (1997)
, the electric field amplitudes
may not be suitably calculated from the Harrick thin film equations.
These equations are approximate and do not take into account the film
thickness and the absorption of the different media. A wrong evaluation
of the physical properties of the film, such as the refractive index or
the thickness (thin or thick films) may also lead to the miscalculation
of the electric fields. It has also been suggested that the optical
properties of an ultra-thin film, and consequently the electric field
amplitudes in the film, may be modified by the adjacent media (Axelsen
and Citra, 1997
).
To address these problems, we have made a detailed analysis of the ATR
spectra of supported single bilayers of dimyristoylphosphatidic acid
(DMPA) covered by either air or water. A phospholipid has been chosen
since it is well known that phospholipids can form highly oriented
bilayers whose orientation has been studied by x-ray diffraction
(Harlos et al., 1984
; Pascher et al., 1987
). In addition, the acyl
chains for lipid bilayers in the gel phase are in the
all-trans conformation and the transition moments of the
methylene stretching vibrations are perpendicular to the chain axis. In
the present study, DMPA was in part chosen because of its high
gel-to-liquid crystalline phase transition temperature (48°C) (Van
Dick et al., 1978
). Therefore, the spectra obtained at room temperature
(~25°C below the phase transition temperature) should be
representative of lipids in the gel phase.
The anisotropic optical constants (real refractive index and extinction
coefficient in and out of the plane of the film) were first determined
from the polarized ATR spectra. Then, the mean-square electric field
amplitudes along the three axes of the ATR crystal were calculated
using a matricial formalism (Hansen, 1965
, 1968
, 1972
, 1973
)
that takes into account the number of layers, their complex refractive
index, and their thickness. These electric field amplitudes were then
compared with those calculated from the Harrick thin film equations and
from the two-phase approximation. To test the validity of the different
models used to calculate the mean-square electric field amplitudes, s-
and p-polarized ATR spectra of a 40-Å lipid layer were simulated for
different molecular tilt angles. For each spectrum simulated with a
given tilt angle ("real tilt angle"), we have calculated the
dichroic ratio and the associated order parameter and tilt angle
("calculated tilt angle"). The difference between the real and
calculated tilt angles has been analyzed to determine which model gives
better values of the electric field amplitudes. Finally, the different factors affecting the orientation measurements have been analyzed.
 |
THEORY |
The computer programs developed to calculate the ATR spectra of
multilayer systems and the intensity of the electric fields in each
layer use the Abelès's matricial formalism (Abelès, 1967
).
This formalism is based on the fact that the equations that govern the
propagation of light are linear and that the continuity of the
tangential fields across an interface between two isotropic media can
be regarded as a 2 × 2 linear matrix transformation. In this
section, the complex refractive index,
j,
is defined as follows:
|
(1)
|
where i is equal to
,
nj is the refractive index, and
kj is the extinction coefficient of the
jth layer.
Spectral simulation
In the Abelès's matrical formalism, the relationship
between the components of the electric (E) and magnetic
(H) field vectors at the upper and lower sides of the
jth layer is governed by the characteristic matrix (Hansen,
1968
):
|
(2)
|
where
j = 2
dj
jcos
j/
represents the phase thickness,
gj = cos
j/
j for p polarization
(electric field vector parallel to the plane of incidence, which is
defined by the (x, z) plane), and gj =
j cos
j for s
polarization (electric field vector perpendicular to the plane of
incidence, along the y axis).
In these terms,
is the wavelength of the incident light in vacuum,
dj is the thickness of the jth layer,
and
j is the angle of refraction in layer j;
j is related to the incidence angle
1 by
Snell's law and satisfies n1 sin
1 =
j sin
j.
The two tangential fields at the first boundary are related to those at
the final boundary by
|
(3)
|
where M is the characteristic matrix of an N phase
system (i.e., N
2 layers between semi-infinite initial
(j = 1) and final (j = N) phases), and
Uk and Vk are the
tangential components of the field amplitudes at the boundary k.
Uk = Eyk and
Vk = Hxk for s
polarization while Uk = Hyk and Vk = Exk for p polarization.
With the use of the components of M, the reflection
coefficients of the multilayer system are expressed, for each
polarization, as follows:
|
(4)
|
The polarized and unpolarized reflectances, which can be directly
measured, are given by
|
(5)
|
As a result, ATR spectra for a multilayer system can be simulated
considering the first phase as the denser medium (refractive index of
the crystal) and knowing the complex refractive index and the thickness
of each layer. It should be mentioned that the matrix method can be
generalized for anisotropic layers, as shown by Yamamoto and Ishida
(1994)
. In this case,
j must be replaced by
yj and
xj for s and p polarizations,
respectively. However, the Snell's law for p polarization becomes
n1 sin
1 =
zj sin
j.
Mean-square electric field amplitudes
Thickness- and absorption-dependent equations
The general procedure for calculating electric field components at
any point in an isotropic stratified system is well developed by Hansen
(1968)
, and is briefly summarized below.
The two tangential field components at point z in phase k
are given by
|
(6)
|
where Mj
1 are the inverse matrices of
Mj, and are obtained by changing the sign of the
m12 and m21 elements in
Eq. 2.
For s polarization, the tangential fields at the first interface are
Equation 6 can be written as follows:
|
(7)
|
where m11(z), m12(z),
m21(z), and m22(z) are the
elements of the Mk
1 (z)
j=k
12 Mj
1 matrix.
The mean-square electric field along y is given by
|
(8)
|
For p polarization, the tangential fields at the first interface
are
The mean-square electric field along x is given by
|
(9)
|
The electric field along z, Ezk can be
derived from the magnetic field Hyk by the
relation
|
(10)
|
and the mean-square electric field along z is given by
|
(11)
|
The explicit expressions of the mean-square electric field
amplitudes can be obtained through pure geometrical optics (Hansen, 1968
) or derived from Eqs. 8, 9, and 11 for a two-, three-, and four-phase stratified system (Axelsen and Citra, 1997
). These expressions are called thickness- and absorption-dependent expressions since they take into account the thickness and the absorption properties of the intermediate phases.
Approximate equations (Harrick equations)
A set of approximate equations for the mean-square electric field
amplitudes in the second phase of a two-phase system were first
proposed by Harrick (1965)
. These equations, called the two-phase
approximation, are obtained from the thickness- and absorption-dependent expressions by setting z = 0 and
are given by
|
(12)
|
|
(13)
|
|
(14)
|
In these equations
1 is the incidence angle in the
ATR crystal and n21 = n2/n1, where n1 and
n2 are the real parts of the refractive indexes
of phase 1 (ATR crystal) and phase 2 (semi-infinite nonabsorbing
phase). These equations can be used for a three-phase system when the
thickness of the layer (phase 2) is very large compared to the depth of
penetration, dp, defined by
|
(15)
|
Harrick has also proposed approximate equations for calculating
the mean-square electric field amplitudes when the thickness of the
layer is very small compared to the depth of penetration (Harrick,
1967
). These equations, called the thin film approximation, are given
by
|
(16)
|
|
(17)
|
|
(18)
|
where n31 = n3/n1
and n32 = n3/n2.
Determination of the optical constants of a uniaxial ultrathin film
A method for the determination of the optical constants of a
uniaxial film (nx = ny, nz and
kx = ky,
kz) has recently been described (Buffeteau et al.,
1997
). In this method, the optical constants in the plane
(nx = ny and
kx = ky) of the thin film deposited onto a transparent substrate (calcium fluoride, zinc selenide, silicon ...) are determined from its transmittance
spectrum at normal incidence. However, the optical constants
perpendicular to the plane of the thin film (nz
and kz) are determined from its p-polarized
reflectance spectrum at grazing incidence (
1 = 85°) on
a metallic substrate (IRRAS spectrum). Although this approach gives
good results for ultrathin films, it requires that the molecular
orientation is the same on all substrates used. In the current study,
we have used a new method where the optical constants are determined
directly from the s- and p-polarized ATR spectra (T. Buffeteau,
unpublished results). The main advantage of this method is that all
measurements are performed on the same sample.
A first estimation of the optical constants can be obtained using
approximate equations of ATR spectra of ultrathin films in air
(n3 = 1). Indeed, using the thin film
approximation (d
), the s-polarized ATR spectrum is
given by
|
(19)
|
and the p-polarized ATR spectrum is given by
|
(20)
|
where Rs,p(d) and
Rs,p(0) are the s- and p-polarized single
reflection ATR spectra for the covered and uncovered crystal, respectively; n1 is the refractive index of the
ATR crystal, and
=
2 is the
complex dielectric constant of the film.
Equation 19 can be used to extract the imaginary part of the dielectric
function
y =
x, and its real
part can be calculated by Kramers-Kronig transformation of the
imaginary part. Then, the initial real and imaginary parts of the
dielectric function are used for calculating the s-polarized ATR
spectrum and are perturbed by a Newton-Raphson method until the
simulated and experimental spectra are sufficiently close to each
other. Finally, the in-plane optical constants are calculated by simple
arithmetical equations using the real and the imaginary parts of the
dielectric function.
To calculate the optical constants perpendicular to the plane of the
film from the p-polarized ATR spectrum, the imaginary part of
(
1/
z) is first calculated using Eq. 20 with the
value of the dielectric function
y =
x obtained from the s-polarized ATR spectrum.
Then, the same procedure as above is used to determine the final values
of the out-of-plane optical constants.
 |
MATERIALS AND METHODS |
Materials
The sodium salt of dimyristoylphosphatidic acid (DMPA) was
obtained from Avanti Polar Lipids (Alabaster, AL) and used without further purification. The water used throughout this study was demineralized and deionized using a Barnstead NANOpurII system (Boston,
MA) with four purification columns.
Sample preparation
The pH of the water used for all the experiments was adjusted to
6.5 with diluted NaOH using a microelectrode (Microelectrodes, Inc.,
Londonderry, NH). An aqueous dispersion of DMPA (2% wt/wt) was
prepared by mixing the appropriate amount of solid in water. This
dispersion was then heated to ~65°C for 10 min, stirred on a vortex
mixer, and cooled down to 0°C for 10 min. This cycle was repeated at
least five times to obtain multilamellar vesicles (MLV). Supported
lipid bilayers were prepared by condensing small unilamellar vesicles
(SUV) on the germanium ATR crystal as described previously for silica
beads (Bayerl and Bloom, 1990
; Picard et al., 1998
). The SUV were
prepared by extruding the MLV dispersion three times through a 0.1 µm
polycarbonate filter (Nucleopore, Toronto, ON) at a temperature above
the lipid gel-to-liquid crystalline phase transition temperature using
a Lipex extruder (Vancouver, BC). The SUV were then diluted to obtain a
lipid concentration of 1% (wt/wt). The lipid solution was then heated
to 65°C and the ATR crystal was immersed in it for 15 min. The
solution was cooled down below the lipid phase transition temperature
(48°C) and the ATR crystal was pulled out and immersed twice in pure water to eliminate the excess of lipid. The single bilayers so obtained
on each side of the ATR crystal were dried out with a gentle nitrogen stream.
FTIR measurements
Infrared spectra were recorded at room temperature (21°C) on a
Nicolet Magna 550 (Madison, WI) Fourier transform infrared spectrometer
equipped with a narrow-band mercury-cadmium-telluride detector and a
germanium-coated KBr beamsplitter. A total of 1000 scans were averaged
at 2 cm
1 resolution after triangular apodization. For
polarization measurements, the infrared radiation was polarized with a
ZnSe wire-grid polarizer (Specac, Orpington, UK).
A bilayer was deposited on the two sides of a germanium ATR plate
(50 × 20 × 2 mm, 45° parallelogram, 24 reflections).
Prior to the deposition, the germanium crystal was cleaned with ethanol and water and placed for 5 min in a plasma cleaner (Harrick, NY). The
crystal covered with the lipid bilayers was placed in a variable angle
ATR unit (Harrick, NY). To obtain hydrated bilayers, the germanium
crystal was covered with a thermoregulated stainless steel recess
jacket fitted with holes allowing liquid circulation above the ATR
crystal. The clean and dry ATR crystal was first heated to 65°C and
the SUV solution of DMPA (~1 ml) was introduced into the
thermoregulated cell for 10 min. The temperature was then cooled down
to room temperature for an additional 10 min. Approximately 10 ml of
pure water was gently introduced into the cell to eliminate the excess
of lipids and to keep the bilayers hydrated on each side of the ATR plate.
All spectral manipulations were performed with the SpectraCalc software
(Galactic Industries Corp., Salem, NH). The spectra in the CH
stretching mode region (3050-2750 cm
1) were first
baseline-corrected using either a linear function in the case of the
spectra of the dry bilayers or a quadratic function in the case of the
spectra of the hydrated bilayers. The baseline corrected spectra were
then interpolated with one level of zero filling to better define the
band maxima. Since the CH stretching mode region is composed of several
overlapping bands, the dichroic ratio of the 2850 and 2918 cm
1 bands were calculated from the height of the bands at
the maximum intensity. Band-fitting of the whole CH stretching mode
region did not decrease the error on the determination of the dichroic ratio.
 |
RESULTS AND DISCUSSION |
Preparation of dry and hydrated single DMPA bilayers
The preparation of a single lipid bilayer is not straightforward.
A well known method is the Langmuir-Blodgett (LB) technique because it
allows control of the number and the surface density of the lipid
layers. Because of the hydrophilic nature of the germanium crystal used
in this study, the first DMPA monolayer was easy to transfer with the
LB technique. However, the deposition of the second monolayer was not
possible because the first monolayer was always retransferred back on
the surface of the Langmuir trough when the covered substrates were
immersed in the subphase. Other groups have reported similar
redeposition problems with phospholipids (Lotta et al., 1988
; Fringeli
and Günthard, 1981
; Hasmonay et al., 1979
; Cui et al., 1990
).
Fringeli et al. (1989)
have proposed a method for the preparation of a
supported single bilayer which consists of depositing a first monolayer
by the LB method while the second monolayer is self-deposited by
immersing the covered substrate in an SUV solution. Good results were
obtained for DMPA using this method. Indeed, we have observed that the
absorbance of the bands in the ATR spectra of a bilayer is twice that
of a monolayer deposited in the liquid-condensed state by the LB
technique with a transfer ratio of 1.0. Identical results were also
obtained with a simpler method that has often been used for NMR
measurements of phospholipid bilayers on spherical solid supports
(Bayerl and Bloom, 1990
; Picard et al., 1998
). This technique,
described in the Materials and Methods section, consists of immersing
clean germanium crystals directly into an SUV solution.
Polarized attenuated total reflection of a DMPA bilayer
S and p-polarized ATR spectra of a dry and of a hydrated single
DMPA bilayer deposited on each side of a germanium ATR crystal are
shown in Fig. 1 for the 3050-2750
cm
1 region. Four bands can easily be distinguished: the
antisymmetric CH3 stretching band
(
a(CH3)) at 2959 cm
1, the
antisymmetric CH2 stretching band
(
a(CH2)) at 2918 cm
1, the
symmetric CH3 stretching band
(
s(CH3)) at 2870 cm
1, and the
symmetric CH2 stretching band
(
s(CH2)) at 2850 cm
1. The
position of the maximum of the methylene bands clearly indicates that
both the dry and hydrated films are well ordered with the acyl chains
in the all-trans conformation as observed for phospholipid dispersions in the gel phase (Mendelsohn and Mantsch, 1986
; Mantsch and
McElhaney, 1991
). The close examination of these bands reveals that
they are slightly broader in the spectra of the hydrated bilayers (by
~4 and 2 cm
1 for the 2918 and 2850 cm
1,
respectively), suggesting that the acyl chains of DMPA are more mobile
in the hydrated film (Casal and Mantsch, 1984
; Mantsch and McElhaney,
1991
). The absorbance of the 2918 and 2850 cm
1 bands for
both polarization states is 0.048 and 0.033 for the dry bilayers,
respectively, which is twice that observed by Labrecque (1995)
for a
dry DMPA monolayer deposited on a germanium crystal by the LB method at
a surface pressure of 20 mN/m. For the hydrated bilayers, the maximum
intensity of the methylene bands is very close to that of the dry
bilayer. However, the bands associated with the antisymmetric and
symmetric CH3 stretching vibrations at 2959 and 2870 cm
1, respectively, are stronger in the ATR spectrum
recorded with the infrared radiation polarized in the plane of
incidence, suggesting that the acyl chains are less tilted in the
hydrated film.

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|
FIGURE 1
S and p-polarized ATR spectra of (A) dry and
(B) hydrated single bilayers of DMPA deposited on each side
of a germanium crystal.
|
|
To determine the orientation of the acyl chain with respect to the
normal to the ATR crystal, the dichroic ratio,
RATR, was calculated from the polarized spectra
of Fig. 1, using the following equation:
|
(21)
|
where Ap and As are
the absorbances of the bands obtained with the infrared radiation
polarized parallel and perpendicular to the plane of incidence,
respectively. Highly reproducible dichroic ratios were obtained for
four different dry and hydrated samples. For the dry bilayers, dichroic
ratios of 1.00 ± 0.01 were calculated for both the 2918 and 2850 cm
1 methylene bands, while for the hydrated bilayers,
dichroic ratios of 1.02 ± 0.02 and 1.00 ± 0.02 were
obtained for these bands, respectively. The lower accuracy for the
results obtained for the hydrated bilayers is essentially a result of
the difficulty in eliminating the water contribution in the ATR spectra.
Assuming a uniaxial distribution of orientation of the acyl chains with
respect to the normal to the ATR crystal (z axis), the order
parameter, Sz, of the transition moment of a
given vibration can be calculated from the three mean-square orthogonal
electric field amplitudes,
Ex,y,z2
,
using the following equation (Fringeli and Günthard, 1981
):
|
(22)
|
For acyl chains with cylindrical symmetry, the order parameter of
the chain axis,
P2 (cos
)
, can be
calculated from the order parameter of the transition moment,
Sz, using the Legendre addition
theorem:
|
(23)
|
where
is the angle between the acyl chain axis and the normal
to the ATR crystal, and
is the angle between the transition moment
and the acyl chain axis. In the case of the
a(CH2) and
s(CH2)
vibrations,
is equal to 90° if the acyl chains are in the
all-trans conformation. If the orientation distribution of the acyl chains is infinitely narrow, it is possible to calculate the
tilt angle
from Eq. 23 (Lafrance et al., 1995
).
Equation 22 shows clearly that it is very important to accurately know
the mean-square electric field amplitudes along the x, y,
and z axis to perform orientation measurements by ATR
spectroscopy. Since the mean-square electric field amplitudes depend on
the film thickness as well as on the refractive indexes of the ATR crystal, film, and environment, it is important to use proper values
for these parameters. The refractive index of germanium is equal to 4.0 and is fairly independent of the wavelength in the infrared region
(Palik, 1985
). The complex refractive index of water in the infrared
region has recently been accurately determined by Bertie and Lan
(1996)
. To our knowledge, the infrared dependence of the complex
refractive indexes of phospholipid bilayers have not yet been
published. We have thus determined these parameters for a DMPA bilayer,
as described in the following section.
Determination of the optical constants for a bilayer of DMPA
To determine the optical constants of thin films using the
procedure described in the Theory section, it is first necessary to
know the thickness (d) and the refractive index of the film. The value used in this study for the thickness of a bilayer of DMPA is
40 Å, as determined by x-ray crystallography (Harlos et al., 1984
). In
the literature, values for the real refractive index of phospholipids
of 1.4 (Citra and Axelsen, 1996
), 1.44 (Brauner et al., 1987
), and 1.5 (Frey and Tamm, 1991
) have been used. Moreover, spectroscopic
ellipsometry measurements on thin films of
dimyristoylphosphatidylcholine have shown that the refractive index at
3000 cm
1 is 1.46 (D. Blaudez, unpublished results). In
this study we have thus used a value of 1.45 for the refractive index
of DMPA. The in-plane (nx = ny and kx = ky) and out-of-plane (nz and
kz) optical constants determined from the s- and
p-polarized ATR spectra of the dry DMPA bilayers, respectively, are
presented in Fig. 2 for the 3050-2750
cm
1 region. The values of the refractive index and the
extinction coefficient at 2918 and 2850 cm
1 are reported
in Table 1. The higher values of the
in-plane extinction coefficient compared to the out-of-plane values for
the methylene bands clearly confirm that the film is anisotropic and
that the transition moments of the methylene stretching vibrations are rather parallel to the surface.

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|
FIGURE 2
(A) Anisotropic refractive indexes
(nx = ny and
nz) and (B) extinction coefficients
(kx = ky and
kz) of DMPA determined from the s- and
p-polarized ATR spectra of the dry single DMPA bilayers.
|
|
From the values of the extinction coefficients along the x,
y, and z directions for a given absorption band, it is
possible to calculate the maximum extinction coefficient,
kmax, when all transition moments are oriented
along the same direction and the isotropic extinction coefficient,
kiso, when the transition moments are randomly
oriented, using the following equation:
|
(24)
|
The value of kmax that depends on the
strength of the oscillator and the molecular density of the film is
0.652 and 0.443 at the maximum intensity of the 2918 and 2850 cm
1 bands, respectively (Table 1). A
kmax of 1.07 for the 2918 cm
1 band
has recently been determined by Flach et al. (1997)
for a condensed
monolayer film of behenic acid methyl ester (BAME) at the air-water
interface. The value of kmax per methylene group being 0.053 for BAME and 0.050 DMPA suggests that the difference between the kmax for the two systems is
essentially due to the difference in the number of methylene groups,
and that the packing surface density of the methylene groups is
essentially the same in the two systems.
Determination of the mean-square electric field amplitudes
The electric field amplitudes along the x, y, and
z axes were calculated using the formalism described in the
Theory section for an isotropic three-phase system. The isotropic
optical constants at 2918 cm
1 of germanium, DMPA, and
water used in these calculations are given in Table
2. Fig. 3
shows the effect of the film thickness, up to 2 µm, on the three
calculated orthogonal mean-square electric field amplitudes in a dry
DMPA bilayer, at the interface between the film and the ATR crystal
(initial values), for a nonabsorbing film (k = 0) and
for an absorbing film (k = 0.217). As predicted from
the Harrick equations, the electric field amplitude along the
z direction is much more sensitive to the film thickness
than those along the x and y directions. The
three electric fields change up to ~1 µm and then remain constant.
For a nonabsorbing film,
Ez2
increases
from an initial value of 0.515 to a maximum value of 2.651. However,
for the same thickness range,
Ex2
decreases only from 1.991 to 1.954 while
Ey2
increases from 2.133 to 2.303. As
seen in this figure, the limiting values of the electric field
amplitudes are in perfect agreement with those calculated from the
Harrick approximate equations for thin and thick films. However, for
film thicknesses between 0 and 0.5 µm, the Harrick equations do not
allow the accurate calculation of the mean-square electric fields. In
addition, Figure 3 shows that for thick absorbing films, the electric
field amplitudes calculated from the thickness-dependent formalism
differ significantly from those calculated from the approximate Harrick
equations, revealing the limitations of these equations. All initial
values of the three electric field amplitudes are smaller for the
absorbing film than those calculated for the nonabsorbing film.
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TABLE 2
Values of the isotropic optical constants of germanium,
DMPA bilayer, and water at 2918 cm 1 used in the
calculation of the electric field amplitudes
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FIGURE 3
Effect of the film thickness on the three calculated
orthogonal mean-square electric field amplitudes,
Ei2 , in a dry DMPA bilayer, at the
interface between the film and the ATR crystal (initial values), for
nonabsorbing film (k = 0) and absorbing films
(k = 0.217). The open and filled squares are the values
calculated using the Harrick thin and thick film equations,
respectively.
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The results of Figure 3 clearly show that it is important to consider
both the film thickness and the extinction coefficient of the studied
film to precisely determine the initial values of the three electric
field amplitudes. However, it is also important to know the variation
of the mean-square electric field amplitudes as a function of the depth
in the film. Fig. 4 shows this
variation for a 40-Å absorbing dry DMPA bilayer. As can be seen, even
for an ultra-thin film, the electric field amplitudes are not constant throughout the film,
Ex2
,
Ey2
and
Ez2
decreasing by ~2, 4, and 8%,
respectively. Therefore, the error made in orientation measurements by
using the initial values of the electric field amplitudes is not
negligible, especially for the field along the z direction.
The use of the mean values of the electric field amplitudes over the
film thickness should be more appropriate. The initial and mean values
of the mean-square electric field amplitudes are compared in Table
3 for an absorbing (k = 0.217) dry DMPA bilayer with a thickness of 40 Å.

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FIGURE 4
Effect of the depth of penetration on the three
calculated orthogonal mean-square electric field amplitudes,
Ei2 , in a 40 Å thick dry DMPA
bilayer.
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TABLE 3
Values of the mean-square electric field amplitudes at
2918 cm 1, acyl chain order parameter, and tilt angle
calculated with different formalisms for a dry and a hydrated bilayer
of DMPA in ATR infrared spectroscopy
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Finally, the mean-square electric field amplitudes for the two-phase
approximation, where the film is not considered, have also been
calculated and the values obtained are presented in Table 3.
Ex2
and
Ey2
have values similar to those
obtained using approximate Harrick thin film equations, whereas
Ez2
is much stronger because the
two-phase approximation does not take into account the refractive index
of the film.
The mean-square electric field amplitudes along the x, y,
and z directions have also been calculated for a hydrated
DMPA bilayer using the different models described above for the dry
film, and are presented in Table 3. As can be seen, the change of
Ez2
with the film thickness is
drastically reduced when the DMPA bilayer is covered with water and the
value of
Ez2
is nearly independent of
the model used for the calculation of the electric fields. This effect
is essentially due to the fact that the refractive index of water is
very close to that of the phospholipid (Table 2).
From the values of the mean-square electric field amplitudes calculated
using the different models and the experimental dichroic ratios of dry
and hydrated DMPA bilayers, the order parameter,
P2 (cos
)
, and the average tilt angle,


, of the acyl chains have been calculated using Eqs. 22 and
23, and are presented in Table 3. For the dry bilayer, the tilt angle
ranges from 28 to 30°, except for the two-phase approximation that
gives a tilt angle of 14°; for the hydrated bilayer, however, the
tilt angle is always between 22 and 23°, no matter which model is
used to calculate the electric fields.
Because the different models for the calculations of the electric
fields give different results for the acyl chain tilt angle for a dry
DMPA bilayer, it is important to determine which model is the best one.
For that purpose, s- and p-polarized ATR spectra of a 40-Å lipid layer
were simulated for different molecular tilt angles. For each spectrum
simulated with a given tilt angle ("real tilt angle"), we have
calculated the dichroic ratio and the associated order parameter and
tilt angle ("calculated tilt angle") using the different sets of
electric fields given in Table 3. Finally, the difference between the
real and the calculated tilt angles has been analyzed to determine
which set of electric fields gives the best results.
Effect of the acyl chain tilt angle on the dichroic ratio
To simulate the polarized ATR spectra of a thin phospholipid film,
we have used a single Lorentzian band centered at 2918 cm
1 with a maximum extinction coefficient
kmax = 0.652 and a width at half-height of
18 cm
1. These parameters are typical of the band due to
the antisymmetric methylene stretching vibration in the DMPA spectra.
For each tilt angle,
, the extinction coefficients
kx, ky, and
kz were calculated from
kmax using the following equations (Fraser and
MacRea, 1973
), assuming that the symmetry of orientation of the
acyl chains is uniaxial and that the angle between the transition
moment and the chain axis,
, is 90°:
|
(25)
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(26)
|
The refractive indexes along the x, y, and z
directions were calculated by the Kramers-Kronig transformation of the
corresponding extinction coefficients, using n = 1.45.
The s- and p-polarized ATR spectra were then simulated using the
formalism described in the Theory section, and the dichroic ratio was
determined from these spectra.
Fig. 5 shows the dependence of the
dichroic ratio on the tilt angle for the 0-40° range for both the
dry and hydrated films. This range of angles has been chosen since
lipid acyl chains tend to orient rather vertically with respect to the
ATR crystal. As can be seen in Fig. 5, the variation of the dichroic
ratio with the tilt angle is more important for the hydrated film than
for the dry film. This is due to the fact that in the hydrated film,
Ez2
is ~5 times higher than in the
dry film, allowing a better sensitivity for the determination of the
orientation of the acyl chains. Furthermore, the variation of the
dichroic ratio for tilt angles below 15° is very small. It can thus
be concluded that the ATR bands resulting from the methylene stretching
vibrations are not suitable for precise orientation measurements of
acyl chains with tilt angles <15°. In such a case, vibrations with
transition moment parallel to the chain axis, such as the wagging
progression vibrations, should be used (Brauner et al., 1987
; Ahn and
Franses, 1992
). Fig. 5 also stresses the importance of determining the
dichroic ratio with the highest possible accuracy. For DMPA, the
dichroic ratio determined experimentally for the 2918 cm
1
band is 1.00 ± 0.01 for the dry film and 1.02 ± 0.02 for
the hydrated film, giving tilt angles of 28 ± 2° and 23 ± 2°, respectively. Nevertheless, the results obtained for the dry film
show that the chain tilt angle in the DMPA bilayers is close to the
31° value determined by x-ray diffraction on crystalline DMPA (Harlos et al., 1984
).

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FIGURE 5
Effect of the acyl chain tilt angle on the dichroic
ratio obtained from the simulated ATR spectra of both dry and hydrated
40-Å-thick lipid bilayers for a vibration with a transition moment
perpendicular to the chain axis.
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Validity of the different models used to calculate the mean-square
electric fields
Fig. 6 shows the correlation between
the tilt angle calculated from the dichroic ratio and the real tilt
angle in the 0-40° range for the different models used to calculate
the mean-square electric fields for dry and hydrated 40-Å lipid films.
The results presented in Fig. 6 A for the dry film indicates
that the Harrick thin film equations give overestimated tilt angles,
the difference between the real and calculated tilt angles increasing
as the tilt angle decreases. For example, the error made by using the Harrick equations is only 2° at a tilt angle of 25°, but it is 10° for a tilt angle of 0°. As seen in Fig. 6 A, the
results obtained using the initial values of the mean-square electric
fields calculated using the thickness- and absorption-dependent
formalism are not better than those obtained from the Harrick thin
films equations. However, when the mean values of the electric fields
over the film thickness (see Table 3) are used to calculate the tilt
angle, the thickness- and absorption-dependent formalisms give
calculated tilt angles that are in almost perfect agreement with the
real ones. Finally, it is clear from Fig. 6 A that the
two-phase approximation is not adequate for the determination of the
chain orientation in phospholipid thin films in air.

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FIGURE 6
Correlation between the "calculated" and "real"
acyl chain tilt angles for (A) a dry and (B) a
hydrated 40-Å-thick lipid bilayer using electric field amplitudes
obtained from the Harrick thin film equations (HTF), from the
thickness- and absorption-dependent formalism using initial
(TAD-Initial) and mean (TAD-Mean) values, and from the two-phase
approximation (TPA).
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These results show unambiguously that to obtain accurate values of acyl
chain tilt angles in dry lipid films, it is important to use the more
complete model to calculate the electric fields, such as the thickness-
and absorption-dependent one, using the mean values of the electric
field over the film thickness. However, such a model is not
straightforward to use routinely, and the Harrick thin film
approximation provides acceptable results for very thin films
(d < 40 Å) where the variation of the electric fields
over the film thickness is relatively small, and for tilt angle
>15°. When the lipid film is covered with water (Fig. 6 B), however, all models give reasonably good correlations
between the calculated and real tilt angles. This results from the fact that for the hydrated lipid film, the mean-square electric field amplitudes are nearly independent of the model used for the calculation (see Table 3).
Factors affecting the orientation measurements
Several factors may affect the accuracy of an orientation
measurement done by ATR spectroscopy. Some of them are related to physical characteristics of the studied system, such as the refractive index and the thickness of the film, and others are related to the
definition of the system itself, such as the width of the orientation
distribution and the symmetry of the system.
Values of the real refractive index of phospholipids between 1.4 and
1.5 have been used in the literature (Citra and Axelsen, 1996
; Frey and
Tamm, 1991
; Brauner et al., 1987
). Fig. 7
shows the effect of the refractive index on the determination of the tilt angle. For the observed dichroic ratio of the dry DMPA bilayer (RATR = 1.00), the tilt angle increases from
26° for n = 1.4 to 30° for n = 1.5.
The effect of the refractive index on the determination of the tilt
angle increases with the tilt angle. However, for tilt angles <30°,
which is the case for most phospholipids, the change of the tilt angle
for refractive indexes between 1.4 and 1.5 is approximately the same as
that due to the experimental error on the determination of the dichroic
ratio, as seen in Fig. 7.

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FIGURE 7
Effect of the lipid refractive index on the dichroic
ratio obtained from the simulated ATR spectra of a dry lipid bilayer
for a vibration with a transition moment perpendicular to the chain
axis.
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It has been shown above that the film thickness is important in the
calculation of electric field amplitudes. Fig.
8 shows the effect of the film thickness
on the determination of the tilt angle. Calculations were done for a
single monolayer (20 Å), a single bilayer (40 Å), and a 60-Å thick
film. As seen in this figure, for a dichroic ratio of 1.00, increasing
the film thickness by a factor of three from 20 to 60 Å results in a
change of the tilt angle of only 2°. This change in the tilt angle is
lower than the error because of the experimental uncertainty of the determination of the dichroic ratio. Therefore, in the case of ultra-thin films of lipids, such as monolayers or bilayers, it is not
necessary to precisely determine the film thickness to determine chain
tilt angles. However, for film thicknesses between 200 Å and 0.5 µm,
the results of Fig. 3 clearly show that the film thickness has to be
known precisely for reliable orientation measurements by ATR
spectroscopy. In this case it is necessary to use the thickness- and
absorption-dependent formalism to determine the mean-square
electric field amplitudes.