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Biophys J, June 1999, p. 3099-3117, Vol. 76, No. 6
*Department of Physiology and Biophysics, University of Miami School of Medicine, Miami, Florida 33101-6430 USA; and #Department of Life Sciences and the Zlotowski Center for Neuroscience, Ben Gurion University of the Negev, Beer-Sheva 84105, Israel
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ABSTRACT |
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The Ca2+-dependent gating mechanism of cloned BK channels from Drosophila (dSlo) was studied. Both a natural variant (A1/C2/E1/G3/IO) and a mutant (S942A) were expressed in Xenopus oocytes, and single-channel currents were recorded from excised patches of membrane. Stability plots were used to define stable segments of data. Unlike native BK channels from rat skeletal muscle in which increasing internal Ca2+ concentration (Cai2+) in the range of 5 to 30 µM increases mean open time, increasing Cai2+ in this range for dSlo had little effect on mean open time. However, further increases in Cai2+ to 300 or 3000 µM then typically increased dSlo mean open time. Kinetic schemes for the observed Ca2+-dependent gating kinetics of dSlo were evaluated by fitting two-dimensional dwell-time distributions using maximum likelihood techniques and by comparing observed dependency plots with those predicted by the models. Previously described kinetic schemes that largely account for the Ca2+-dependent kinetics of native BK channels from rat skeletal muscle did not adequately describe the Ca2+ dependence of dSlo. An expanded version of these schemes which, in addition to the Ca2+-activation steps, permitted a Ca2+-facilitated transition from each open state to a closed state, could approximate the Ca2+-dependent kinetics of dSlo, suggesting that Ca2+ may exert dual effects on gating.
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INTRODUCTION |
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Large-conductance Ca2+-activated
potassium channels (BK or maxi-K+ channels) are activated
by both intracellular Ca2+ and membrane depolarization.
Consequently, BK channels provide a direct link between
Ca2+-dependent cellular processes and membrane potential
(reviewed by McManus, 1991
; Latorre, 1994
). BK channels have been
observed in a wide variety of cell types where they play crucial roles in many different physiological processes including neurotransmitter release (Robitaille et al., 1993
), secretion (Petersen and
Maruyama, 1984
), smooth muscle contraction (Nelson et al., 1995
), and
the electrical tuning of cochlear hair cells (Hudspeth and Lewis, 1988
;
Wu et al., 1995
).
Considerable progress has been made toward understanding the
Ca2+-dependent gating mechanism of BK channels due to their
unusually large conductance (150-350 pS in symmetrical 150 mM KCl),
which allows single-channel currents to be recorded with high time
resolution. For example, the minimal model of McManus and Magleby
(1991)
and an expanded version of this model with additional brief
closed states (Rothberg and Magleby, 1998
) can account for the major features of the Ca2+-dependent single-channel kinetics of
native BK channels in rat skeletal muscle from low to moderate levels
of Cai2+. Wu et al. (1995)
were able to account
for the activity of native BK channels in turtle cochlear hair cells by
expanding the minimal model of McManus and Magleby (1991)
with two
additional closed states (denoted as Ca2+-blocked states)
beyond the open states.
The recent cloning of the BK channel pore-forming
subunit, first
from Drosophila (dSlo) (Atkinson et al., 1991
;
Adelman et al., 1992
), and later from other species, has allowed
investigators to study BK channels of known primary structure (DiChiara
and Reinhart, 1995
; McManus et al., 1995
; Silberberg et al., 1996
; Cox
et al., 1997
; Schreiber and Salkoff, 1997
; Stefani et al., 1997
).
However, compared to native BK channels, much less is known about the
detailed single-channel kinetics of cloned BK channels.
The purpose of the present study was to characterize the
Ca2+-dependent single-channel kinetics of dSlo
and to work toward developing a kinetic scheme that could account for
the observed effects of Cai2+. We found that,
unlike native BK channels in rat skeletal muscle where increases in
Cai2+ lead to progressive increases in mean open
time, increases to intermediate Cai2+ (30 µM)
for dSlo had little effect on mean open time. Further increases to higher Cai2+ (300 or 3000 µM) for
dSlo then typically increased mean open time. Kinetic
schemes for the observed single-channel gating were evaluated by
fitting two-dimensional (2-D) dwell-time distributions using maximum
likelihood techniques. Results indicate that the models, which largely
account for the Ca2+-dependent kinetics of native BK
channels from rat skeletal muscle, do not adequately describe the
Ca2+-dependent single-channel kinetics of dSlo.
However, an extension of the models of McManus and Magleby (1991)
and
Wu et al. (1995)
, which permits a Ca2+-facilitated
transition from each open state to a brief closed state, can
approximate the Ca2+-dependent kinetics of dSlo.
A preliminary report of some of these findings has appeared (Moss et
al., 1998
).
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MATERIALS AND METHODS |
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Expression of dSlo channels in Xenopus oocytes
Xenopus laevis oocytes were enzymatically separated
using collagenase as previously described (Dahl, 1992
). Earlier work
had suggested that dSlo channels expressed in
Xenopus oocytes may be modulated by an endogenous cyclic
AMP-dependent protein kinase (PKA)-like protein, which remains
functionally associated with the channels in excised patches (Esguerra
et al., 1994
; see Bowlby and Levitan, 1996
). Therefore, oocytes were
microinjected with either cRNA transcribed in vitro from cDNA encoding
variant A1/C2/E1/G3/I0 of dSlo (wild-type channel) (Adelman
et al., 1992
) or with cRNA in which a putative PKA phosphorylation site
was eliminated by replacing serine at position 942 with alanine (S942A
channel), as described previously (Esguerra et al., 1994
).
Single-channel currents from expressed BK channels were recorded in
excised patches of membrane 2-4 days after microinjecting 2-10 ng of cRNA.
Single-channel recording
Currents were recorded from dSlo channels using the
inside-out configuration of the patch-clamp technique (Hamill et al., 1981
) as described previously (Silberberg et al., 1996
). Unless otherwise indicated, experiments were performed on patches containing a
single S942A channel, determined by extended recordings at levels of
Cai2+ that would be expected to readily activate
BK channels. Xenopus oocytes can express very low levels of
endogenous BK channels (Krause et al., 1996
). However, the
single-channel currents in the present study are unlikely to have
arisen from endogenous BK channels since these channels are apparently
activated at lower Cai2+ than was observed for
the dSlo channels studied here. Also, single dSlo
channels (variant A1/C2/E1/G3/I0) are characterized by a very
distinctive gating pattern in which channel openings are interrupted by
numerous brief closings, or "flickers," in contrast to the much
lower frequency of flickers in the records of Krause et al. (1996)
.
For the experiments on dSlo, the pipette (extracellular)
solution contained (in mM): potassium gluconate, 154; KCl, 6;
CaCl2, 1; MgCl2, 1; TES buffer
(N-tris (hydroxymethyl)methyl-2-aminoethane sulfonic acid),
5. The microchamber (intracellular) solution contained (in mM):
potassium gluconate, 150; KCl, 10; TES buffer, 5; and sufficient
CaCl2 to achieve the desired levels of free calcium. Solutions were adjusted to pH 7.0. The method used to estimate the
buffering capacity of gluconate for Ca2+ is detailed in
Silberberg et al. (1996)
. The data presented from native BK channels in
rat skeletal muscle were from previous experiments carried out in
symmetrical 144-150 mM KCl with 5 mM TES pH buffer, and using various
methods to set Cai2+ (details in McManus and
Magleby, 1991
; Rothberg and Magleby, 1998
).
The membrane potential of the excised patches was held at +30 mV
(intracellular side positive). Current records were effectively low-pass filtered at 6.5-9 kHz (
3 dB) as indicated in the figure legends. Experiments were performed at room temperature (21-23°C).
Sampling and measuring interval durations
Single-channel current records were sampled at 100-200 kHz,
durations of open and closed intervals were measured with
half-amplitude threshold analysis, and stability plots were constructed
as described in detail previously for dSlo (Silberberg et
al., 1996
) and native BK channels (McManus and Magleby, 1988
, 1991
).
Two of the four experiments examining the effect of high Cai2+ on mean open time (and no other kinetic parameters) were performed on patches containing two dSlo channels. Mean open time was determined from the upper level with two channels open by multiplying the measured open duration for this level by two, as either channel could close. This result was in agreement with the estimates of mean open time obtained directly from the lower level.
Log-binning and plotting one-dimensional (1-D) dwell-time distributions
The methods used to log bin the intervals into 1-D dwell-time
distributions, fit the distributions with sums of exponentials using
maximum likelihood fitting techniques (intervals less than two dead
times were excluded from the fitting), determine the number of
significant exponential components with the likelihood ratio test, and
generate simulated current records with filtering and noise have been
described previously (Blatz and Magleby, 1986
; McManus and Magleby,
1988
, 1991
; Colquhoun and Sigworth, 1995
). Dwell-time distributions are
plotted with the Sigworth and Sine (1987)
transformation, as the square
root of the number of intervals per bin, without correcting for the
logarithmic increase in bin width with time.
Log-binning and plotting 2-D dwell-time distributions
The theory of 2-D dwell-time distributions can be found in
Fredkin et al. (1985)
, Keller et al. (1990)
, and Rothberg et al. (1997)
. Two-dimensional dwell-time distributions were generated as
detailed in Rothberg and Magleby (1998)
, and plotted by extending the
Sigworth and Sine (1987)
transformation to 2-D dwell-time distributions. Briefly, every open interval and its following (adjacent) closed interval were binned as well as every closed interval
and its following (adjacent) open interval, with the logs of the open
and closed interval durations of each pair locating the bin on the
y and x axes, respectively. The 2-D surface plots were generated with the program Surfer (Golden Software, Golden, CO).
Dependency plots
Dependency plots were constructed from the 2-D dwell-time
distributions as described in Magleby and Song (1992)
. The dependency for each bin of open-closed interval pairs with mean durations to and tc is:
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(1) |
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(2) |
Estimating the most likely rate constants for kinetic schemes
The most likely rate constants for the examined kinetic schemes
were determined from fitting 2-D frequency histograms (dwell-time distributions) obtained at either a single Cai2+
or simultaneously fitting distributions obtained at three or four
different Cai2+. Fitting was done using an
iterative maximum likelihood fitting procedure similar to the one
detailed in McManus and Magleby (1991)
, except that 2-D dwell-time
distributions replaced the 1-D dwell-time distributions, and the
correction method of Crouzy and Sigworth (1990)
for missed events due
to filtering replaced our previous correction method. Additional
details of the fitting including the methods used to correct for missed
events are given in Rothberg and Magleby (1998)
.
Evaluating and ranking the kinetic schemes
Normalized likelihood ratios (NLR) were used to compare the
ability of any given kinetic scheme to describe the experimental 2-D
dwell-time distributions to the description given by the theoretical best fit (McManus and Magleby, 1991
; Rothberg and Magleby, 1998
). Normalization accounts for the differences in numbers of interval pairs
among experiments, so that comparisons can be made among channels. The
normalized likelihood ratio per 1000 interval pairs, NLR1000, is defined as:
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(3) |
Although the NLR1000 gives a measure of how well different
kinetic schemes describe the data, it cannot be used directly for ranking schemes since no penalty is applied for the number of free
parameters. To overcome this difficulty, the Schwarz criterion was used
to apply penalties and rank models (detailed in McManus and Magleby,
1991
). The Schwarz criterion (SC) is given by
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(4) |
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RESULTS |
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Currents recorded from single dSlo channels
Currents recorded from a single dSlo channel in an
excised patch of membrane from a Xenopus oocyte are shown in
Fig. 1, A and D on
slow and fast time bases, respectively. Openings (upward current steps)
separated by very brief closed intervals are grouped into bursts
separated by longer closed intervals. Occasional isolated openings of
brief duration also occur. Such complex activity is consistent with
entry into multiple open and closed states during gating, as described
previously for native BK channels from skeletal muscle (reviewed by
McManus, 1991
; Latorre, 1994
). The objective of this study is to work
toward developing a kinetic gating mechanism that can account for this
single-channel activity of dSlo.
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Stability plots can be used to define stable segments of data from dSlo channels
The open probability (PO) of cloned
dSlo channels expressed in Xenopus oocytes is
often less stable than that of native BK channels in cultured rat
skeletal muscle (Silberberg et al., 1996
; Bowlby and Levitan, 1996
).
Therefore, precautions were taken to obtain stable data for analysis.
Only channels in which PO appeared relatively
stable for at least 10 min were selected for initial analysis. Each
channel was then analyzed with stability plots (Blatz and Magleby,
1986
) to examine the stability of the kinetic properties as well as to
identify moding and subconductance levels (McManus and Magleby, 1988
).
The process used to select stable data for analysis from one dSlo channel is shown in Fig. 1. Fig. 1 A presents consecutive single-channel current traces for 10 continuous minutes of recording. Fig. 1 B shows stability plots of the open (top) and closed (bottom) intervals from the record in Fig. 1 A. Each line segment plots the average duration of 150 consecutive open or closed intervals. For 90% of the intervals (~40,000 of the 44,500 total open and closed intervals), both the mean open time and mean closed time remained relatively constant, suggesting stable channel kinetics. This predominant type of activity will be referred to as normal mode activity. The remaining 10% of the intervals was associated with three distinct kinetic modes other than normal. The modes labeled 1 and 2 in Fig. 1 B were characterized by abrupt decreases in both mean open time and mean closed time. The mode labeled 3 was characterized by a decrease in mean closed time with no corresponding change in mean open time. The variation in PO due to moding is apparent in Fig. 1 C.
Inspection of the current record corresponding to mode 1 revealed that
the channel generated a burst of very brief open and closed intervals
(Fig. 1 D, 1) similar to the buzz mode described for native BK channels in cultured rat skeletal muscle (McManus and
Magleby, 1988
). During mode 2, the channel opened to a subconductance level of ~40% of the normal open level (Fig. 1 D,
2). Mode 3 was associated with a decreased duration of the
shut intervals (not shown).
Intervals occurring during sojourns to modes other than normal were
excluded from the analysis, and the resulting stability plots for the
remaining open and closed intervals are shown in Fig. 1 E.
These data represent activity in the normal mode. The moving means
fluctuate about the overall means of 2.5 ms for the open intervals and
29.6 ms for the closed intervals (dashed lines). A
fluctuation of the mean responses about the overall means during normal
activity is expected due to stochastic variation in the open and closed
interval durations (Blatz and Magleby, 1986
). The fluctuations of the
closed intervals about the mean during normal activity are greater than
those of the open intervals because the range of durations of closed
intervals averaged for each segment was greater. Fig. 1 F
presents the corresponding stability plot of PO
during normal activity. The stability plots in Fig. 1, E and
F are consistent with relatively stable kinetics during
normal mode activity, as there is no indication of long-term drift in the running means.
Recordings were obtained from a total of 53 excised patches (39 S942A
and 14 wild-type), each containing a single dSlo
channel. Thirty-nine of these channels were rejected because the stable number of intervals was insufficient for analysis or because of large
fluctuations in PO over time, suggestive of
wanderlust kinetics (Silberberg et al., 1996
; Bowlby and Levitan,
1996
). The results presented in this paper were obtained from the
remaining 14 dSlo channels (12 S942A and 2 wild-type).
Although most of the channels studied were S942A, there was no obvious
indication that wild-type channels were less stable than the mutant
(Silberberg et al., 1996
) or had different kinetics. The data were
initially analyzed as described above to obtain stable segments of data
during normal activity. Data from individual channels were analyzed
separately, because dSlo channels encoded by the same cDNA
may display variable calcium sensitivity (Silberberg et al., 1996
).
Increasing Cai2+ from 5 to 30 µM has little effect on mean open time
Fig. 2, A and
C presents currents recorded through a single
dSlo channel at two different Cai2+.
Increasing Cai2+ from 8.5 µM to 30 µM
increased PO (from 0.10 to 0.69), as would be
expected for a BK channel. This increase in PO
was associated with a marked decrease in the durations of closed
intervals separating bursts of openings, consistent with results
described previously for both native and cloned BK channels (McManus
and Magleby, 1991
; Adelman et al., 1992
; DiChiara and Reinhart, 1995
).
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Fig. 2, B and D presents currents recorded from
the same dSlo channel, but on a faster time base so that
open intervals within bursts of openings can be resolved. Surprisingly,
the open interval durations appeared little changed when
Cai2+ was increased to 30 µM. This apparent
insensitivity of dSlo open interval duration to increasing
Cai2+ contrasts to the observed increase in open
interval duration with increasing Cai2+ reported
for native rat skeletal muscle BK channels (McManus and Magleby, 1991
).
To further examine the apparent insensitivity of open interval duration to increasing Cai2+, mean open interval durations were measured and plotted against Cai2+ for five dSlo channels. As shown in Fig. 3 A, mean open time remained relatively constant (with a suggestion of a slight decrease) over the examined range of Cai2+ (5-30 µM).
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For comparison, Fig. 3 C plots mean open time versus Cai2+ for eight BK channels from previous experiments on cultured rat skeletal muscle. In contrast to the apparent insensitivity of dSlo channel mean open time to increasing Cai2+, the mean open time of all eight native BK channels increased dramatically (~2-3-fold) over a similar range of Cai2+. The difference in response was not due to differences in filtering, as three of the eight channels in Fig. 3 C had levels of filtering similar to those used in Fig. 3 A, and the relatively flat response in Fig. 3 A was still observed when the level of filtering was increased to be similar to that of the more heavily filtered channels in Fig. 3 C (not shown).
The major anion in the solutions for the experiments on dSlo
was gluconate
to eliminate currents through
Ca2+-activated Cl
channels present in
oocytes. This differs from Cl
used as the major anion for
the previous experiments on native rat skeletal muscle BK channels.
However, the difference in response is unlikely to be due to the
difference in anion, as BK channels cloned from mouse (mSlo)
and expressed in oocytes using gluconate
as the major
anion show an increase in mean open time with increasing Cai2+, similar to that observed for native
skeletal muscle BK channels (B. L. Moss, unpublished observations,
three of three examined mSlo channels). Thus, the gating of
dSlo differs from that of both mSlo and BK
channels in rat skeletal muscle.
In contrast to the differential effects of increasing Cai2+ on the mean open time of dSlo and native skeletal muscle BK channels, increasing Cai2+ consistently decreased mean closed time for both types of BK channels, as shown in Fig. 3, B and D.
Effect of Cai2+ on the 1-D dwell-time distributions
Fig. 4 presents 1-D dwell-time distributions of open and closed interval durations obtained from a single dSlo channel at two different Cai2+. Increasing Cai2+ from 8.5 to 30 µM had little effect on the open intervals and shifted the closed intervals from longer to briefer durations. The lines plot the maximum likelihood fits with sums of exponentials. Each of the open distributions was well-described by the sum of three significant exponential components and the closed distributions were described by the sums of six (8.5 µM) and five (30 µM) significant exponential components (detailed in figure legend). Similar shifts were observed for each of the other four dSlo channels shown in Fig. 3, A and B over the range of examined Cai2+.
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Minimum number of kinetically distinct states
The number of significant exponential components required to
describe the dwell-time distributions of open and closed intervals gives an estimate of the minimum number of kinetic open and closed states (Colquhoun and Hawkes, 1981
). Estimates of the number of significant open and closed exponential components for data from 10 dSlo channels are presented in Fig.
5. The estimates are plotted against the
number of intervals analyzed for each distribution, since the number of
significant exponential components can increase with increasing numbers
of intervals due to increased resolution to separate exponential
components (McManus and Magleby, 1988
). The open dwell-time
distributions were typically described by the sum of three significant
exponential components, and the closed dwell-time distributions were
typically described by the sums of five to seven significant
exponential components. This suggests that dSlo channels
typically enter at least three open and five to seven closed kinetic
states during normal activity, as do native BK channels in rat skeletal
muscle (McManus and Magleby, 1988
).
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Increasing Cai2+ to high concentrations (300-3000 µM) can increase mean open time
Increasing Cai2+ from 5 to 30 µM had little effect on mean open time (Fig. 3 A). To investigate whether open channel block by Ca2+ might be masking a Ca2+-induced increase in mean open time, we recorded from dSlo channels at low and high Cai2+. Fig. 6 presents currents recorded from a single dSlo channel in an experiment of this type. Increasing Cai2+ from 11 to 3000 µM increased mean open time from 2.5 to 8.6 ms. While it is not known how many, if any, of the closings might arise from Ca2+ block, if only 10% of the closings in 11 µM Cai2+ were due to simple Ca2+ block, then the 270-fold increase in Cai2+ should have decreased the mean duration of open intervals ~28-fold. Clearly, no such decrease is observed in Fig. 6. (The filtering was greater for the experiment shown in Fig. 6 than for those shown in Fig. 3 A, and this contributed to the increased mean open time obtained in Fig. 6 at 11 µM Cai2+ when compared to the mean open times in Fig. 3 A. Increasing the filtering for the data in Fig. 3 A (for three of the examined channels) increased the mean open times into the range of those observed in Fig. 6, while having little effect on the slopes of the relationship between Cai2+ and mean open time).
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In four experiments of the type shown in Fig. 6, increasing
Cai2+ from low levels (
30 µM) to very high
levels (300-3000 µM) either had little effect on mean open time (one
experiment) or increased mean open time 2-3-fold as in Fig. 6 (three
experiments). In contrast, mean closed time decreased in these
experiments from ~1 ms at 30 µM Cai2+ to
~0.1 ms at 3000 µM Cai2+.
The failure of high Cai2+ to decrease mean open time suggests that the apparent Ca2+-insensitivity of mean open time observed at lower Cai2+ (Fig. 3 A) was not due to simple open channel block by Cai2+ masking a Ca2+-induced increase. However, as will be considered in later sections, if the open states are blocked differentially by Ca2+, then the observation that high Cai2+ does not decrease mean open time does not rule out more complex types of block by Ca2+.
In addition to increasing mean open time, high
Cai2+ (3000 µM) also reduced the
single-channel current amplitude by ~10%, as shown in Fig. 6. A
reduction in conductance at millimolar Cai2+ has
also been observed for native skeletal muscle BK channels, and is
consistent with possible screening effects of Ca2+ in the
vestibule of the channel (Ferguson, 1991
).
2-D dwell-time distributions contain correlation information
To develop kinetic schemes that can account for the single-channel
kinetics of gating, it is necessary to determine the connections (transition pathways) among the various open and closed states. Two-dimensional dwell-time distributions, which plot the relative number of times (frequency) various pairs of adjacent open and closed
intervals of specified durations are observed in the single-channel record, contain correlation information that can help determine these
connections (Fredkin et al., 1985
; Keller et al., 1990
; Magleby and
Weiss, 1990
; Magleby and Song, 1992
).
Fig. 7, A and C
presents 2-D dwell-time distributions for two different
dSlo channels. The y and x axes plot
the log of the durations of adjacent open and closed intervals in the
single-channel record, respectively, and the z axis plots
the square root of the number of observations in each bin (see
Methods). In theory, the total number of potential peaks in the 2-D
dwell-time distribution is equal to the number of kinetic open states
multiplied by the number of kinetic closed states, with the peaks
located at the intersection of the time constants of the open
components on the y axis and the time constants of the
closed components on the x axis (Fredkin et al., 1985
;
Rothberg et al., 1997
). Fitting the dwell-time distributions for the
channels represented in Fig. 7, A and C gave four
open and six closed exponential components, suggesting 24 potential peaks for each channel.
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In practice, the only visibly distinct peaks in 2-D dwell-time
distributions are those arising from components composed of the most
frequent interval combinations or those arising from components with
time constants widely separated from those of other components (Magleby
and Weiss, 1990
; Magleby and Song, 1992
; Rothberg et al., 1997
).
For example, for the channels presented in Fig. 7, A and
C, it first appears that only two of the potential 24 peaks
are visible. However, upon closer inspection, the peaks are wider than
would be expected for single exponentials, and slight inflections can
be seen on the sides of the peaks, suggesting that each of the two
major peaks are composed of a number of underlying 2-D components. The
highest peak in Fig. 7, A and C (peak
4) arises mainly from long open intervals adjacent to brief closed
intervals; this combination occurs most frequently. In contrast, the
peak arising from brief open intervals adjacent to long closed
intervals (peak 3) is considerably lower; this combination
occurs less frequently.
Two-dimensional dwell-time distributions were examined for eight additional dSlo channels. In general, the major features of the 2-D dwell-time distributions were conserved among all dSlo channels examined. (Additional examples of 2-D dwell-time distributions will be presented in a later section.).
Dependency plots present information about the kinetic structure of dSlo channels
Although 2-D dwell-time distributions contain correlation
information, this information is not obvious from visual inspection of
the plots because the relative heights of the individual peaks indicate
the relative frequency of occurrence of the various pairs of open and
closed interval durations, and not whether a given pair is in excess or
deficit over what would be expected from random pairing of the
intervals. Dependency plots provide a means to display this correlation
information (Magleby and Song, 1992
). A dependency plot presents the
fractional difference between the observed number of adjacent open and
closed intervals of indicated durations and the hypothetical number
that would be observed if all of the open and closed intervals paired
independently (Eqs. 1 and 2 in Methods).
Dependencies of +0.5 or
0.5 would indicate 50% more or 50% fewer
observed interval pairs, respectively, than expected for independent
pairing of open and closed intervals. Thus, a negative dependency for a
given interval pair suggests a relative deficit of effective transition
pathways between the open and closed kinetic states (including compound
states) that give rise to that pair. Conversely, a positive dependency
for an interval pair suggests the presence of effective transition
pathways between the open and closed kinetic states (including compound
states) that give rise to that pair (Magleby and Song, 1992
; Rothberg
et al., 1997
). Because dependency plots present high gain
representations of excesses and deficits in the observed number of
interval pairs relative to the expected number assuming independent
pairing, estimates of dependency can be unreliable where the numbers of observed interval pairs per bin in the 2-D dwell-time distributions are
small. Consequently, references to dependency in the following sections
will be made only where a sufficient number of interval pairs
contribute to the dependencies to obtain reliable estimates (see
Rothberg and Magleby, 1998
). Such dependencies will be referred to by
numbers on the dependency plots.
Fig. 7, B and D presents dependency plots derived from the 2-D distributions in Fig. 7, A and C, respectively. The heavy lines indicate a dependency of zero. These dependency plots share several major features. First, there is a 20-30% deficit of brief open intervals adjacent to brief closed intervals (Fig. 7, B and D, position 1). This deficit suggests a relative lack of effective transitions between the open and closed states giving rise to the brief open intervals and brief closed intervals. Second, there is a 20% deficit of long open intervals adjacent to long closed intervals (Fig. 7, B and D, position 6). This deficit suggests a relative lack of effective transitions between the open and closed states giving rise to the long open intervals and long closed intervals. Third, there is a 30-60% excess of brief open intervals adjacent to long closed intervals (Fig. 7, B and D, position 3). This excess suggests that there is an effective connection between the open and closed states giving rise to the brief open intervals and the long closed intervals. Finally, there is a 5-10% excess of long open intervals adjacent to brief closed intervals (Fig. 7, B and D, position 4). Although the dependency is small at position 4, this small fractional excess involves a large number of intervals because of the large number of intervals at position 4 in the 2-D dwell-time distributions. The excess at position 4 in the dependency plots suggests that there is an effective connection between the open and closed states giving rise to the long open intervals adjacent to the brief closed intervals.
Dependency plots were examined for eight additional dSlo channels. In general, these four prominent excesses and deficits of interval pairs (positions 1, 3, 4, and 6) were observed in dependency plots obtained from all dSlo channels analyzed with 2-D methods.
In addition to these major features, the plots also suggested that the dependency of brief open intervals (<0.1 ms) adjacent to intermediate closed intervals (~1 ms) increased as PO increased. To investigate this possibility, we plotted the dependency at position 2 against PO for 16 dependency plots obtained from nine dSlo channels over a range of Cai2+ (Fig. 8). Although there was variability in response, the dependency at position 2 did increase as a function of PO. Data from channels H23 and H21 (open circle and open square in Fig. 8) were selected for presentation in Fig. 7 because these data gave two representative examples of the types of responses that could be observed, and also because these data had large numbers of intervals, which facilitates model discrimination. Any proposed gating mechanism should account for these types of responses.
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Scheme 1 approximates the kinetic structure of dSlo channels at a single Cai2+
McManus and Magleby (1991)
found that Scheme 1, with three open
and five closed states and four Ca2+-binding sites, could
account for the major features of Ca2+-dependent gating of
native BK channels from rat skeletal muscle over a 400-fold range of
PO, and Silberberg et al. (1996)
found that an
extension of Scheme 1 with some variable rate constants could
approximate some features of dSlo wanderlust kinetics
examined at the level of 1-D distributions. Thus, as a starting point
to examine the detailed single-channel kinetics of dSlo, we
examined to what extent Scheme 1 could account for the kinetic
structure.
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To determine whether Scheme 1 could account for the gating properties
of dSlo BK channels, single 2-D dwell-time distributions from nine dSlo channels were fitted with Scheme 1 to
determine the most likely rate constants. Scheme 1 with the most likely rate constants was then used to simulate single-channel current records
with filtering and noise similar to that in the experimental data. The
simulated single-channel current records were then analyzed just as the
experimental current records were to obtain the predicted 2-D
dwell-time distributions and dependency plots. Such analysis of 2-D
distributions can distinguish models that are not separable by analysis
of 1-D distributions (Magleby and Weiss, 1990
), because the 2-D
distributions contain the correlation information shown in the
dependency plots, which defines the relationships between adjacent intervals.
Fig. 9 presents the 2-D distributions and dependency plots predicted by Scheme 1 for the same two dSlo channels shown in Fig. 7. Scheme 1 approximated most of the major features of the kinetic structure of these dSlo channels, each examined at a single Cai2+. However, some discrepancies were observed. To estimate the magnitude of the errors, the difference between the predicted and observed 2-D dwell-time distributions for each channel is plotted in Fig. 9, C and F, where the heavy lines indicate a difference of zero. Although Scheme 1 approximated the data, it did predict too many brief closed intervals adjacent to longer open intervals (position 4) in Fig. 9 C, and too much dependency at position 3 (Fig. 9 E). A similar ability to approximate the data was observed for seven additional data sets fitted at a single Cai2+. Thus, the differences between predicted and observed responses suggest that Scheme 1 may be too simple to account for the gating kinetics of dSlo BK channels.
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Scheme 2 provides a better description of the kinetic structure of dSlo at a single Cai2+
The observed insensitivity of mean open time to increasing Cai2+ at low to intermediate concentrations (Fig. 3 A) might result from brief Ca2+-block or Ca2+-induced allosteric transitions to brief closed states. However, the observation that increasing Cai2+ to high concentrations typically increased mean open time (Fig. 6) appears inconsistent with such simple models for Ca2+ block or Ca2+-induced allosteric transitions. Nevertheless, if the blocking or allosteric transition rates were less for those open states that were typically entered at higher Cai2+ than for those open states that were typically entered at lower Cai2+, then mean open time could increase with increasing Cai2+.
To examine this possibility, Scheme 1 was extended to include a
Ca2+-dependent transition to a separate closed state from
each open state. The resulting Scheme 2 is a more general version of a
model proposed by Wu et al. (1995)
for native BK channels in turtle cochlear hair cells, in which Ca2+ blocked only
O1 and O2. Fig.
10 presents the predicted 2-D
dwell-time distributions, dependency plots, and differences between
predicted and observed dwell-time distributions for Scheme 2 for the
same two dSlo channels shown in Fig. 7. Scheme 2 improved
the prediction of the dependency at positions 3 and 4 and also
decreased the differences between the predicted and observed dwell-time
distributions (compare Figs. 10, 9, and 7). Improvements in the
predicted kinetic structures for Scheme 2 when compared to Scheme 1
were obtained for the seven additional channels
examined.
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To quantitatively evaluate the abilities of Schemes 1 and 2 to describe the observed 2-D dwell-time distributions, likelihood ratios normalized to 1000 pairs of intervals, NLR1000, were calculated (see Eq. 3 in Methods). A NLR1000 of 1.0 would indicate that a kinetic scheme describes the distributions as well as theoretically possible for a discrete-state Markov model with the same number of states as in the kinetic scheme. When the 2-D dwell-time distributions obtained at a single Cai2+ from nine dSlo channels were fitted with Scheme 1, the NLR1000 ranged from 0.00024 to 0.059. In contrast, when the same 2-D distributions were fitted with Scheme 2, the NLR1000 ranged from 0.24 to 0.60, indicating that Scheme 2 provided a better description of the data. (The log likelihood ratio (LLR), given by the log likelihood for Scheme 2 minus the log likelihood for Scheme 1, ranged from 75 to 176 for the examined channels, also indicating that Scheme 2 gave a better description of the data than Scheme 1.) While the NLR1000 gives a measure of how well a given model describes the data, it cannot be used for ranking schemes, since no penalty is applied for the number of free parameters. To overcome this difficulty, the Schwarz criterion was used to apply penalties and rank models (Eq. 4 in Methods). Using the Schwarz criterion, Scheme 2 ranked above Scheme 1 for all dSlo channels studied at a single Cai2+. For example, for channel H21 (Fig. 7, C and D) the Schwarz criterion was 124,561 for Scheme 2 and 124,707 for Scheme 1, where the scheme with the smallest value ranks first (see Methods). Thus, the visual impressions from the kinetic structure suggesting that Scheme 2 describes the data better than Scheme 1 are in agreement with the quantitative rankings.
Fig. 11 presents five sets of rate constants for Scheme 2 obtained by fitting five different dSlo channels. The top two bars in each set of five are for the two representative dSlo channels in Fig. 7 fitted at a single Cai2+. (The bottom three bars are for simultaneous fitting of data obtained at different Cai2+ and will be discussed later.) In general, the relative values of the rate constants for Scheme 2, in terms of which were fast and which were slow, were similar for the nine different channels fitted at a single Cai2+. However, there could be large differences in estimates of some of the rate constants, such as for rates 2-3 and 3-2, which are in a loop and were typically poorly defined. For most channels, the closing rates from states C9, C10, and C11 were typically fast so that the mean lifetimes of these states were very brief (~0.05 ms). Each channel was also fitted with a version of Scheme 2 in which the closing rates for states C9, C10, and C11 were constrained so that these states would have identical mean lifetimes. In most cases, constraining the closing rates in this manner had little effect on the results for fitting data at a single Cai2+.
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Scheme 2 approximates the effects of changing Cai2+ on dSlo gating kinetics
While Scheme 2 provides a reasonable description of the kinetic structure at a single Cai2+, a further test would be to see how well the model can account for the effects of changes in Cai2+ on dSlo gating kinetics, as revealed by the kinetic structure. Fig. 12 presents 2-D dwell-time distributions and dependency plots for a representative dSlo channel (channel H06) at three different Cai2+. Note the pronounced shift of long closed intervals to briefer durations as Cai2+ was increased, as indicated by the leftward shift of the arrows in Fig. 12, A, C, and E, where the arrows indicate the peaks.
|
Estimates of the most likely rate constants for Scheme 2 were determined by simultaneously fitting the 2-D dwell-time distributions obtained at three or four different Cai2+ for each of three different dSlo channels. Fig. 13 presents the 2-D dwell-time distributions, dependency plots, and difference plots predicted by Scheme 2 at 8.5, 11, and 30 µM Cai2+ for the channel shown in Fig. 12. Comparison of Figs. 12 and 13 indicates that Scheme 2 accounted for the major features of the Ca2+-dependent shifts in the 2-D dwell-time distributions, including the shift from longer to briefer closed interval durations. (The arrows are from Fig. 12 and indicate where the peaks of the observed distributions would fall.) Scheme 2 also approximated the basic features of the Ca2+-dependent shifts of the dependency plots, but with some differences. For example, Scheme 2 underpredicted position 3 for 11 µM Cai2+. However, the difference plots indicate that the errors were small, especially at 30 µM Cai2+. A similar ability to approximate the dwell-time distributions and dependency plots was obtained for each of the other two channels analyzed in this manner.
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The dashed lines in Fig. 3, A and B plot the predicted mean open and closed times for Scheme 2 as a function of Cai2+ for channel H06 and also for the two other channels analyzed by simultaneous fitting of 2-D dwell-time distributions obtained at different Cai2+. The mean open times are well-described for the fitted channels, and the Cai2+ dependence of the mean closed times are reasonably described for two of the three fitted channels. For the third channel (squares) the observed decrease in mean closed time was somewhat greater than predicted.
Although gating was not studied in detail at high Cai2+, the predicted response of Scheme 2 at high Cai2+ for channel H06 was calculated. Increasing Cai2+ from 11 µM to 3000 µM increased the predicted mean open time 2-fold and decreased mean closed time ~30-fold (not shown), which is consistent with the observations made at high Cai2+. Thus, Scheme 2 can predict a dual response in plots of mean open time versus Cai2+ (little or no effect for low to moderate Cai2+ followed by an increasing mean open time for high Cai2+), and a monotonic decrease in mean closed time. In terms of Scheme 2, the dual response in mean open time for channel H06 arose because the Ca2+-dependent rate constants for transitions O1-C9 and O2-C10 were considerably less than for transition O3-C11. Thus, as higher Cai2+ drives the gating away from O3 and O2 toward O1, the effective rate of transitions to the brief closed states is decreased, leading to longer mean open intervals.
The NLR1000 for Scheme 2 for the three channels, each
fitted simultaneously to three or four different
Cai2+, ranged from 3.4 × 10
3
to 1.3 × 10
12 (Table
1). Thus, the NLR1 for a
single interval pair (given by (NLR1000)0.001)
ranged from 0.994 to 0.973, suggesting an average likelihood difference
per interval pair of 0.6% to 2.7% between the theoretical best fit of
the distributions and the descriptions by Scheme 2. This small
difference in the normalized likelihood ratio per interval pair is
reflected in the ability of Scheme 2 to give reasonable descriptions of
the distributions. (A detailed discussion of normalized likelihood
ratios can be found in McManus and Magleby, 1991
.)
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As shown in Table 1, Scheme 2 ranked significantly above Scheme 1 (P < 0.001) for all three channels that were each fitted simultaneously to three or more Cai2+. The consistent finding that Scheme 2 ranked above Scheme 1, whether fitting data obtained at a single Cai2+ or multiple Cai2+, reduces the possibility that the ranking was affected by possible drift in the data that would be more likely to occur when data are collected over a range of Cai2+. A further reason for rejecting Scheme 1 is that the dependency plots predicted for Scheme 1 with rate constants obtained by simultaneous fitting of multiple Cai2+ did not predict (not shown) the inverse relationship between the durations of adjacent open and closed intervals that is consistently observed in the dependency plots in the experimental data (notice in Figs. 7 and 12 that brief closed intervals tend to be adjacent to long open intervals and long closed intervals tend to be adjacent to brief open intervals).
The rate constants obtained for Scheme 2 for channel H06 and the two additional channels included in Table 1 are presented in Fig. 11 (lower three bars for each rate). For the three channels fitted at multiple Cai2+, there were very rapid transitions between states O1 and C4, whereas there were very few transitions between these two states for the channels fitted at a single Cai2+. Such a difference may reflect that the rate constants between O1 and C4 are poorly defined or may reflect the greater restrictions on rate constants imposed by fitting multiple Cai2+. To distinguish among these possibilities, each channel fitted at a single Cai2+ was also fitted with Scheme 2, in which the rate constants between O1 and C4 were constrained to those values obtained from channels fitted at multiple Cai2+. In each case the constrained model for the single data sets ranked significantly below the unconstrained one (not shown). Consequently, the rate constants between O1 and C4 are well defined, and the large differences in the values of these rate constants when fitting single and multiple data sets most likely reflect that Scheme 2 is simpler than the actual gating mechanism. If the scheme were correct and the data perfect, then the rate constants obtained from the simultaneous fitting of multiple data sets should also describe the single data sets as well as when fitting single data sets alone.
Schemes 3 and 4 ranked below Scheme 2
In contrast to the Ca2+-dependent transitions to the
brief closed intervals in Scheme 2, Rothberg and Magleby (1998)
found
that Scheme 3, in which the transitions to the brief closed intervals were not Ca2+-dependent, gave improved descriptions of the
kinetic structure of native BK channels in rat skeletal muscle when
compared to Scheme 1. Consequently, we examined how well Scheme 3 could
account for the Ca2+-dependent kinetics of dSlo.
As shown in Table 1, Scheme 3 ranked above Scheme 1, but below Scheme
2.
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DiChiara and Reinhart (1995)
have suggested that the gating of
dSlo is consistent with Scheme 4, which has only the first two Ca2+-binding sites when compared to the four
Ca2+-binding sites of Scheme 1. For the three channels
examined with simultaneous fitting in our study, Scheme 4 ranked lower
than Schemes 1-3 (Table 1).
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More complex schemes
In addition to Schemes 1-4, a number of more complex schemes with additional states and/or different connections among the states were examined. In general, the large numbers of free parameters in these more complex models resulted in many of the rate constants being poorly defined, and it was also difficult to determine whether the most likely rate constants had been found for such complex models. Consequently, examination of more complex models is best delayed until additional data, such as channel activity over a range of voltages and a wider range of Cai2+, and also from step changes in Cai2+, are obtained to better define and constrain the rate constants.
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DISCUSSION |
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The results of this study suggest that the effects of increasing Cai2+ on the gating kinetics of dSlo variant A1/C2/E1/G3/IO are complex and can be divided into at least two phases. Increasing Cai2+ from 5 to 30 µM had little effect on mean open time, whereas increasing Cai2+ to high concentrations (300-3000 µM) typically increased mean open time. Evaluation of kinetic schemes fit to 2-D dwell-time distributions indicated that previously described schemes that largely account for the Ca2+-dependent kinetics of native BK channels from rat skeletal muscle (Schemes 1 and 3) did not adequately describe the Ca2+ dependence of this dSlo channel. However, an expanded version of these schemes that permits a Ca2+-facilitated transition from each open state to a brief (secondary) closed state (Scheme 2) could approximate the Ca2+-dependent kinetics of this dSlo BK channel variant.
Scheme 2 was the minimal model that described the major features of the Ca