A Monte Carlo analysis has been made of calcium dynamics
and quantal secretion at microdomains in which the calcium reaches very
high concentrations over distances of <50 nm from a channel and for
which calcium dynamics are dominated by diffusion. The kinetics of
calcium ions in microdomains due to either the spontaneous or evoked
opening of a calcium channel, both of which are stochastic events, are
described in the presence of endogenous fixed and mobile buffers.
Fluctuations in the number of calcium ions within 50 nm of a channel
are considerable, with the standard deviation about half the mean.
Within 10 nm of a channel these numbers of ions can give rise to
calcium concentrations of the order of 100 µM. The temporal changes
in free calcium and calcium bound to different affinity indicators in
the volume of an entire varicosity or bouton following the opening of a
single channel are also determined. A Monte Carlo analysis is also
presented of how the dynamics of calcium ions at active zones, after
the arrival of an action potential and the stochastic opening of a
calcium channel, determine the probability of exocytosis from docked
vesicles near the channel. The synaptic vesicles in active zones are
found docked in a complex with their calcium-sensor associated proteins
and a voltage-sensitive calcium channel, forming a secretory unit. The
probability of quantal secretion from an isolated secretory unit has
been determined for different distances of an open calcium channel from
the calcium sensor within an individual unit: a threefold decrease in
the probability of secretion of a quantum occurs with a doubling of the
distance from 25 to 50 nm. The Monte Carlo analysis also shows that the
probability of secretion of a quantum is most sensitive to the size of
the single-channel current compared with its sensitivity to either the
binding rates of the sites on the calcium-sensor protein or to the
number of these sites that must bind a calcium ion to trigger
exocytosis of a vesicle.
 |
INTRODUCTION |
The discovery of the synaptic vesicle associated
proteins that are involved in exocytosis, such as the SNAP receptors
synaptotagmin and synaptobrevin and the soluble N-ethyl
maleimide-sensitive fusion protein attachment protein (SNAPs) syntaxin
and SNAP 25, have greatly changed the conceptual framework within which
quantal transmission can now be considered (Südhof, 1995
).
Indeed, synaptotagmin may well be the calcium sensor that triggers
transmitter release on the arrival of an action potential (Brose et
al., 1992
). Of particular interest has been the discovery of a tight
coupling between the voltage-dependent calcium channel that gates the
entry of calcium for triggering exocytosis (whether N-type or P/Q-type) and a complex consisting of syntaxin and synaptotagmin (O'Connor et
al., 1993
; Yoshida et al., 1992
; el Far et al., 1995
; Martin-Moutot et
al., 1996
). The existence of a secretory unit of this kind has
important implications for quantal transmission (Bennett, 1996
). It is
natural to associate a secretory unit with the concept of the
"calcium microdomain," the region of high calcium concentration of
the order of 100 µM that is calculated to occur within a distance ~25-50 nm from an open calcium channel (Simon and Llinás,
1985
; Zucker and Fogelson, 1986
). It has been suggested that these are the distances to be expected between the calcium channel and the calcium sensor among the vesicle associated proteins, probably synaptotagmin, although there is no direct evidence for these conjectures at this time (Yoshikami et al., 1989
; Stanley, 1993
).
There is evidence that secretory units significantly increase the
efficiency of transmission at some synapses. Only one calcium channel
need open in the avian ciliary ganglion terminal for a quantum of
transmitter to be released, indicating that the calcium within a single
microdomain is sufficient to trigger secretion (Stanley, 1993
).
Uncoupling the connection of domains II and III of the alpha I subunit
of the N-type channel with syntaxin/SNAP 25 in the secretory unit leads
to fragmentation of the units in motor nerve terminals, with a
consequent 25% drop in evoked quantal release (Rettig et al., 1997
).
In addition, the observation that relatively slow calcium chelators
such as ethylene glucol-bis(
-aminoethyl ether)-N,N,N',N'-tetraacetic acid (EGTA) do not affect
transmission at motor nerve terminals, whereas a fast chelator such as
1,2-bis(2-aminophenoxy)ethane-N,N,N,N-tetraacetic acid
acetoxymethyl ester (BAPTA) does (Robataille et al., 1993
), suggests
that it is the high and relatively fast calcium transient in the
microdomains that is responsible for triggering exocytosis in motor
nerve terminals. Furthermore, the results of voltage clamp studies of
transmitter release in the stellate ganglion of the squid indicate that
single nonoverlapping calcium microdomains exist in the terminals,
presumably within secretory units (Augustine et al., 1991
). It would
seem, then, that the calcium in microdomains of secretory units in both
preganglionic and motor nerve terminals is dominant for triggering
secretion. The importance attached to calcium in microdomains has
prompted the present study.
A Monte Carlo description is given of the spatial distribution of
calcium ions after they move out of an open channel and bind to the
fixed and mobile buffers in region of domains after the opening of the
channel. Calculations are given for channels having the properties of
N-type calcium channels and opening spontaneously or under an action
potential. These results are compared with the solutions of the
transport equations that describe the buffered diffusion of calcium in
the presence of rapid stationary and mobile calcium buffers (Wagner and
Keizer, 1994
). They are also compared with two approximations to the
solutions, namely the rapid buffering approximation (Wagner and Keizer,
1994
; Smith et al., 1996
; Smith, 1996
) and the linearized steady-state
approximation (Neher, 1986
; Pape et al., 1995
; Naraghi and Neher,
1997
). In addition, an analysis is given of the calcium changes in the
volume of a varicosity or bouton in the presence of an indicator
consequent on the opening of a single calcium channel, either
spontaneously or under an action potential, and these results compared
with those obtained from calculations that use deterministic equations
to describe calcium movements in terminals (Sinha et al., 1997
).
Finally, the most appropriate set of parameters arrived at for the
description of calcium dynamics in a microdomain is used in a Monte
Carlo analysis of the probability of quantal release from vesicles. These are arranged in different spatial arrays about a channel and open
either spontaneously or under an action potential.
A subsequent paper (Bennett et al., 2000
) gives a Monte Carlo analysis
of the probability of quantal release for the case where many secretory
units are present at a nerve terminal and a number of their associated
calcium channels open upon the arrival of a nerve impulse.
 |
METHODS |
In this section we outline the theory of calcium diffusion and
buffering in a three-dimensional space, and then describe how this
system can be simulated numerically using a Monte Carlo approach. The
use of Monte Carlo methods in the context of transmitter release, diffusion, and binding was pioneered by Bartol et al. (1991)
and subsequently applied in a number of related studies (Faber et al.,
1992
; Bennett et al., 1995b
,c
, 1996
, 1997b
, 1998
). The following adapts
the method to the case of calcium entering via a single channel, then
diffusing and interacting with both fixed and mobile buffers, and
binding to vesicle associated proteins. The region considered is a
cubical box with 1-µm sides (Fig. 1).
The plasmalemma is represented by the 1 µm × 1 µm base, lying
in the xy plane, and calcium ions enter via a channel
situated at the center of this plane. The other sides of the box
represent the membrane walls of the terminal, and all six sides can
contain calcium pumps that are incorporated into the Monte Carlo scheme
as described below.

View larger version (13K):
[in this window]
[in a new window]
|
FIGURE 1
The Monte Carlo simulation uses a cubic box with 1-µm
side length. The plasmalemma is represented by the 1 µm × 1 µm base; calcium ions enter via a channel situated in the center of
the base. Calcium pumps are situated on all six walls of the box.
|
|
The Monte Carlo simulation method is an alternative to solving the
reaction-diffusion equations, which are deterministic differential equations giving the temporal and spatial dependence of the average concentrations of the free calcium and of the various buffer complexes that may be present. A detailed comparison between the differential equation and the Monte Carlo approaches for the case of transmitter diffusion and binding has been given by Bartol et al. (1991)
and many
of the same arguments apply in the present case. In particular, the
Monte Carlo approach is closer to the physical situation in that it
gives some indication of the size of the stochastic fluctuations that
are likely to occur. These can be very significant in the neighborhood
of an open channel, where although the average calcium concentration
can reach the order of 100 µM, this relatively high concentration is
due to the presence of only a few calcium ions in a small volume. (In
fact, for a concentration of 100 µM a cubic box with 100-nm sides
would contain only ~60 ions.)
Calcium channels
Calcium channels in the plasmalemma can undergo either
spontaneous or evoked opening. In the spontaneous case, a channel opens for a certain time T and during this time admits a constant
current ic; thus the input calcium current is a
rectangular pulse. If the channel is assumed to have only two states,
open and closed, then T is exponentially distributed
(Bennett et al., 1995c
, 1997a
); that is, it has the density function
|
(1)
|
where
is a constant. Thus T has mean and standard
deviation equal to 1/
.
For the case of evoked release under an action potential,
calcium channels open at different times for different durations, with
therefore different driving forces on the calcium entry through the
channels. A quantitative description of this has been given in the case
of N-type calcium channels (Bennett et al., 1997a
; see especially Fig.
4 in that paper). There, the way in which a single channel opens under
a Hodgkin-Huxley action potential was investigated in detail with the
opening and closing times, topen and
tclose, being modeled as nonhomogeneous Poisson
processes with rate parameters that depend on the action potential, and hence are functions of time (compare Clay and DeFelice, 1983
). The
single-channel calcium current,
ic(t), was also expressed as a
function of the potential. The total charge q that enters through a single channel during the course of an action potential can
be found as
|
(2)
|
where g(t) is 1 if the channel is open and 0 otherwise; the second expression follows upon the assumption that a
given channel opens at most once during the course of a single action
potential. (Simulations showed that multiple openings were rare:
Bennett et al., 1997a
.)
Differential equations for calcium diffusion and buffering
The conventional way to characterize calcium diffusion and
buffering is via differential equations that describe the spatial and
temporal evolution of the various ionic and molecular species present.
The buffering is assumed to be governed by the reaction
|
(3)
|
where Ca2+ represents free calcium ions,
Bi represents unbound buffer molecules, and
CaBi represents calcium bound to buffer; i = f for fixed buffer and i = m for mobile buffer.
The system is then governed by the equations (see, for example, Wagner
and Keizer, 1994
; Naraghi and Neher, 1997
):
|
(4)
|
|
(5)
|
|
(6)
|
|
(7)
|
|
(8)
|
where
(t) is the calcium source density, assumed
to be at the origin [
(r) is a Dirac delta function] and
D
are the various diffusion coefficients.
These equations can be solved directly, using suitable numerical
techniques (see, for example, Smith et al., 1996
). Also, a number of
approximations have been developed. One of these, the rapid buffering
approximation (Wagner and Keizer, 1994
; Smith et al., 1996
; Smith,
1996
) utilizes the fact that the buffering kinetics act on a time scale
that is much faster than the time scale for diffusion (see Appendix A), leading to the conclusion that the reaction described by Eq. 3 rapidly
attains equilibrium, so that
|
(9)
|
where [Bi]T = [Bi] + [CaBi] is the total buffer concentration and
Ki = ki
/ki+ is the
dissociation constant for buffer i. Use of this
approximation enables the set of Eqs. 4-8 to be replaced by a single
differential equation describing the transport of calcium (Wagner and
Keizer, 1994
) and this has advantages for numerical solution (Smith et al., 1996
) and for mathematical analysis (Smith, 1996
).
A second approximation, valid for small calcium entry in the presence
of a large concentration of mobile buffer, is the linearized steady-state approximation first given by Neher for the case where [Bm] and [CaBm] are assumed constant
(Neher, 1986
) and later generalized to include the diffusion of
Bm (Stern, 1992
; Pape et al., 1995
; Naraghi and Neher,
1997
). This approximation gives the leading term in a perturbation
expansion, the unperturbed state being the equilibrium state before
calcium entry influx. It leads to the steady state calcium
concentration being given by (Pape et al., 1995
; Naraghi and Neher,
1997
)
|
(10)
|
where c0
[Ca2+]0 is the background calcium level,
is the constant source density, assumed to be into a hemisphere,
is a space constant given by 1/
2 = 1/
c2 + 1/
m2 where
c =
is the characteristic length for binding of diffusing calcium, and
m =
is the corresponding quantity for the mobile buffer
(Dc
DCa,
Dm
DBm). If
c
m, the last term in Eq. 10 can be
neglected and
can be replaced by
c in the second term, which recovers the earlier expression of Neher (1986)
.
Monte Carlo method
The following sections give details of the Monte Carlo
simulation scheme. This is implemented via a computer program written in Fortran and run on a Digital Alpha workstation. The
pseudo-code used is given in Appendix B.
Diffusion of calcium
In the Monte Carlo method, the motion of each individual calcium
ion is followed as it diffuses inside the terminal. The motion is not
followed at the level of the actual Brownian motion but at a coarser
level, using a timestep
t (of the order of 1 µs) during
which the ion is assumed to move in a straight line. The distance
travelled is a random variable that depends on
t and on
the diffusion coefficient Dc
DCa.
The equation for unrestricted diffusion in three-dimensional space is
|
(11)
|
where c
c(x, y, z, t) is the density of the
diffusing particles at point (x, y, z) at time t.
From this, it follows that if a particle starts from the origin at time
t = 0 and reaches the point (X, Y, Z) at
time t, then each Cartesian coordinate X, Y, Z is
an identically distributed Gaussian random variable with density
function
|
(12)
|
where W = X, Y or Z and w = x, y, or z, respectively. The average distance
travelled parallel to any coordinate axis in time t is
E(|W|) = 2
,
so in time
t the average increment in any coordinate is
|
(13)
|
The actual increment L = |W| in each
coordinate can be found by generating random numbers using the
distribution in Eq. 12. It is convenient to relate this to the random
variable U, uniformly distributed on (0, 1), by
L =
erf
1(U), where erf
1 is the
inverse error function. A practical formula, based on dividing the
distribution into 100 bins of equal probability, is (Bartol et al.,
1991
)
|
(14)
|
where j takes integer values uniformly distributed on
[1, 100]. This method has been used in the calculations presented
here. For species other than free calcium, Dc is
to be replaced by the appropriate diffusion coefficient in the above formulas.
For the single calcium channel considered here, calcium entry is
assumed to take place at the origin into the half-space z > 0; the number of Ca2+ entering during each timestep
t can be calculated from the single-channel current
ic using the fact that a calcium current of 1 pA
corresponds to ~3120 Ca2+/ms. In each time interval
t the x, y, and z coordinates of
each calcium ion in the system are updated by adding ±L to
each coordinate where + or
is chosen at random (with equal
probability), and the values for L are generated as
described above. That is, in the time interval
t the ion
moves, in a straight line, from position (x, y, z) to
position (x +
x, y +
y, z +
z),
where the increments
x,
y, and
z are
chosen from the distribution with density function (Eq. 12). The major
part of the calculation is now bookkeeping: at the end of each timestep
the current coordinates of each calcium ion are recorded and then used
as the initial conditions for the next step. The simplest case is when
the ion remains inside the terminal during the timestep so the new
coordinates can be immediately recorded. If the ion's displacement
during
t is such that it would cross a wall of the
terminal, then it is assumed to undergo specular reflection; that is,
the motion parallel to the wall is unchanged but the component
perpendicular to the wall is reversed. Other possibilities concern the
interaction with buffers and indicators, the effect of ionic pumps in
the terminal walls, and the binding of calcium ions to
vesicle-associated proteins at the plasmalemma. The incorporation of
each of these effects into the Monte Carlo scheme is described below.
It should be mentioned that although background calcium of
concentration c0 = [Ca2+]0 is present throughout the
system, it is not explicitly included in the Monte Carlo calculation,
which involves only excess calcium. Thus, the calculations involve
[Ca2+]excess given by
|
(15)
|
where [Ca2+]actual is the actual
concentration. Allowance for this use of excess calcium is made when
required, as described in the sections below.
Fixed buffer
The fixed buffer is taken to be distributed uniformly with
density [Bf]T throughout the volume under
consideration. The calcium ions bind reversibly to the buffer molecules
according to Eq. 3 with i = f. Some of the initial
fixed buffer molecules bind to the background calcium present in the
terminal; using the steady-state form of Eq. 7 with
[Ca2+] = c0 and [Bf] = [Bf]excess, where
[Bf]excess is the residual fixed buffer
concentration, gives
kf+c0[Bf]excess + kf
[CaBf] = 0. But
[Bf]excess = [Bf]T
[CaBf], leading
to
|
(16)
|
where Kf = kf
/kf+. (For
the values of Kf and c0
given in Table 1 below,
[Bf]excess is ~99% of
[Bf]T.) In order to incorporate the fixed
buffer into the Monte Carlo scheme, we first divide the total volume
into equal cubes of volume
V such that each cube contains
one buffer molecule and the overall density is
[Bf]T = 1/
V. A
number of these molecules, chosen at random, are assumed to be bound to
background calcium so that the remaining unbound buffer molecules have
density [Bf]excess, as given by
Eq. 16. The background bound buffer molecules are assumed to remain
bound and so effectively no longer enter into the computation; in
addition, as discussed above under calcium diffusion, only excess
calcium ions are considered in the Monte Carlo simulation. It is
estimated that the total error introduced by this joint approximation
is <1% for the parameters used in the calculations reported here (see
Appendix A). At each timestep
t suppose that a calcium ion in a cube containing an unbound buffer molecule binds to that molecule with probability p+. Then the average
number of bindings in time
t in that cube will be
[Ca2+]excess
V p+;
but from Eq. 3 this average is also given by kf+[Ca2+]excess
t,
leading to an expression for the binding probability p+ in terms of the forward binding rate
kf+:
|
(17)
|
It is assumed that unbinding is a Poisson process with rate
constant kf
, so the bound buffer molecules
unbind in timestep
t with probability p
given by Bartol et al., 1991
|
(18)
|
(For the parameter values given in Table 1,
p+
0.11 and p
0.004.)
Mobile buffer
The mobile buffer is taken to be initially distributed uniformly
throughout the volume under consideration with density
[Bm]T. The calcium ions bind reversibly to
the buffer molecules according to Eq. 3 with i = m. The
principal difference to the fixed buffer case is that now, as well as
the calcium ions diffusing, both the buffer molecules Bm
and the bound molecules CaBm diffuse. Theoretically, the
Monte Carlo scheme could be modified to keep track of all these
species, but this would both slow the calculation and the additional
bookkeeping needed would limit the size of system that could be
simulated. Therefore, an approximate scheme has been implemented based
on dividing the space into equal cubic cells that each contain the same
number of mobile buffer molecules. Again, an adjustment must be made
for binding to the background calcium, and this reduces the initial
density from [Bm]T to
[Bm]excess given by (cf. Eq. 16)
|
(19)
|
(See Appendix A for a discussion of the accuracy of this
approximation.) It is now assumed that binding probabilities are
uniform over each cubic cell and proportional to the number of unbound
mobile buffer molecules in that cell. A crucial further assumption is
that both unbound (Bm) and bound (CaBm)
molecules diffuse at the same rate, so that the total buffer
concentration ([Bm] + [CaBm]) remains
uniform throughout the whole volume, and hence the average number of
unbound plus bound buffer molecules in each cell remains constant. (The
assumption that both the free and the complexed form of a buffer
species have the same diffusion coefficient is also made by Klingauf
and Neher, 1997
.) If fluctuations about this average are neglected,
then it is sufficient to track the bound molecules (CaBm),
updating their positions at each timestep using increments from the
distribution (Eq. 12), but with Dc replaced by
DBm. Each time the count of
CaBm molecules within a cell changes (by binding,
unbinding, or diffusion of CaBm from one cell to another)
the population of that cell is recomputed, so that ([Bm] + [CaBm]) remains constant. In this way, it is not
necessary to explicitly follow the diffusion of the unbound buffer
molecules Bm. The binding probabilities are immediately
adjusted when the cell population changes, and this may occur several
times in the same timestep. For a given cell, this probability is
(compare Eq. 17)
|
(20)
|
where
is the ratio of unbound to total mobile buffer
molecules in that cell. The unbinding probability is again given by Eq. 18. This method of handling the mobile buffer involves little more
bookkeeping than was required for the calcium alone, the main addition
being a table of cell populations. (The good agreement obtained between
the Monte Carlo calculations and calculations based on the differential
equation approach, see Fig. 5 below, indicates that this approximation
is justified.)
This approximate treatment of the mobile buffer does lead to some small
inaccuracies, particularly in [CaBm]. If the cubic cells
are made too large, then the assumption of uniform binding probabilities in each cell is not valid; however, making the cells too
small encounters the problem that each cell must contain an integral
number of molecules. Thus a compromise must be found; in the
calculations reported here, the cubes have sides of ~50 nm and each
contains about seven buffer molecules. Calculations are also performed
using the indicators fura-2 and furaptra; these are treated in the same
way as the mobile buffer, using the appropriate diffusion and binding
rates (see Table 1).
Calcium pumps
At the plasmalemma and at any other terminal boundary the
diffusing molecules are mirror-reflected as described above (unless they bind to vesicles or pumps, as described below). In a number of
calculations, a cubic box with 1-µm sides is used to represent the
terminal, and all its sides are reflecting walls. In other calculations, where only effects near the plasmalemma are being considered, the volume considered is a cube with 1-µm sides, but only
the side representing the plasmalemma is a reflecting wall; the other
sides are transparent, and once a molecule passes through them it is
lost and no longer included in the bookkeeping.
Calcium pumps occur both in the plasmalemma and in the other walls of
the terminal. The pumping is represented as a "tunneling" process
in which the cytoplasmic calcium ion first binds (irreversibly) to the
pump, and then upon unbinding is ejected from the terminal:
|
(21)
|
This process must now be incorporated into the Monte Carlo
scheme. Following Bartol et al.'s treatment of receptor and of esterase binding, it is assumed that the membrane walls are "tiled" with squares of side length 1/
, where
P is the pump density and that each square contains one
pump. To bind to an available pump a calcium ion must first hit the square containing that pump; this will be determined by the line joining its position at the beginning and at the end of the interval
t. Assuming that it hits, it will then bind with a
probability p+, which is related to the
corresponding binding rate k1 by (cf. Bartol et
al., 1991
, Eq. 6a)
|
(22)
|
If the ion fails to bind, or if it hits a square where the pump
molecule is already bound, then it undergoes specular reflection, as
described above. The unbinding probability per timestep does not depend
on the calcium diffusion and is simply given by
|
(23)
|
The rate coefficients k1 and
k2 are not directly measurable. To get estimates
it is necessary to relate them to the usual parameters describing
lumped calcium extrusion through a plasma membrane. The standard
expression for the flux due to pumping is
VP[Ca2+]actual/(KP + [Ca2+]actual), where
VP and KP are constants
(Sala and Hernandez-Cruz, 1990
; Kargacin and Fay, 1991
; Nowycky and
Pinter, 1993
). If we assume that there is also a constant inward leak
that just balances the pump at the resting calcium level
c0, then [Ca2+]excess
satisfies
|
(24)
|
where
P = VPKP/(KP + c0) and
P = KP + c0. This can be
related to the Monte Carlo scheme by applying the Michaelis-Menten approximation to Eq. 21 (e.g., Murray, 1993
), leading to the following expression for the rate of calcium extrusion:
|
(25)
|
where [Ca2+]excess is the excess
calcium concentration inside the terminal, defined by Eq. 15. Comparing
Eq. 25 with Eq. 24 gives k2 =
P/
P and
k1 = k2/
P.
Note that in the above way of assigning parameter values the pump
density,
P, is, within reasonable limits, an arbitrary
parameter. Once
P has been given a value,
k1 and k2 are then chosen
to give the desired pumping rate.
Vesicles and exocytosis
The standard assumption will be that calcium ions bind to the
vesicle-associated proteins according to the scheme (Heidelberger et
al., 1994
; Heinemann et al., 1994
)
|
(26)
|
where Si, i = 1, ...,
4 denotes the state with i sites occupied,
Sex denotes the state with four sites occupied
after the conformational change, µi(t)
(
i(t)) are the rates of attachment
(detachment) of a calcium ion at the ith step, and
(t) is the rate for the final step. These attachment
rates µi are taken to be proportional to the excess
calcium concentration at the position of the vesicle-associated protein, and the detachment rates
i are taken to be
constants, independent of time:
|
(27)
|
and the conformational change rate
is taken to be a
time-independent constant. A further simplification is to assume no cooperativity in binding or unbinding, in which case
kia = ka and
kid = kd,
i = 1, ... , 4. The above single-affinity scheme
for the binding of calcium to the vesicle-associated proteins has been
used to describe calcium-dependent exocytosis at synapses formed by
goldfish retinal bipolar cells (Heidelberger et al., 1994
) and bovine
chromaffin cells (Heinemann et al., 1994
). A more complex scheme may be
used in which the binding sites have different affinities, although an
investigation of such kinetics indicates that the results obtained for
the probability of secretion are not much different from those for the
single-affinity case (see Fig. 7 in Bennett et al., 1997a
).
To incorporate this into the Monte Carlo scheme, we again
follow Bartol et al.'s treatment of receptor binding and assume that
the plasmalemma is "tiled" with squares whose size is determined by
the geometric placement and the density of the vesicle array being
modeled. The vesicle binding site is represented as a disk of radius
rV placed at the center of selected tiles. To
bind, a calcium ion must first hit the disk [which will be determined by whether its free path during the interval
t would pass
through the tile, this path being the straight line from point
(x, y, z) to point (x +
x, y +
y,
z +
z)]; it will then bind with probability
p+, which is related to the corresponding
forward binding rate k+ by (compare Eq. 22):
|
(28)
|
where aV =
rV2 is the area of the vesicle disk. If
it does not bind it is reflected in the usual way. The binding
probabilities change according to how many calcium ions are already
bound; for the binding of the ith calcium ion, where
i = 1, ... , 4, p+ is given by Eq. 28
with k+ = (5
i)ka.
The unbinding per timestep does not depend on the calcium concentration
and is given by (cf. Eq. 18)
|
(29)
|
where k
= ikd,
i = 1, ... , 4 is the relevant rate constant. The
conformation change is treated using a similar formula.
Other schemes have also been proposed with different Ca2+
stoichiometries, requiring the binding of either three or two
Ca2+ before the final conformational change leading to
exocytosis (Heinemann et al., 1993
; 1994
). These will be used as a
comparison with the four-binding case given by Eq. 26.
Parameter choice
The main parameter values used in the calculations are listed in
Table 1. Some comments on these choices can be found in the Discussion section.
 |
RESULTS |
The Monte Carlo results are divided into two main sections. The
first of these is concerned with establishing the calcium transients
that occur immediately about a single open N-type calcium channel; in
addition, the transients of free calcium and of indicator calcium in
the volume of a varicosity or bouton are considered. The second section
is concerned with using the information provided by the previous
section to establish how a calcium transient at a secretory unit
triggers vesicle exocytosis following an action potential, when these
vesicles are arranged in different configurations with respect to the channel.
In all cases the terminal contains a mobile buffer with the
characteristics of calmodulin and a fixed buffer with the
characteristics of calbindin (see Table 1). In addition, a calcium
indicator is sometimes present, which is either furaptra,
representative of a low-affinity indicator, or fura-2, representative
of a high-affinity indicator. Unless otherwise mentioned, all values of
free calcium and of calcium bound to the various buffers are the means
of at least five trials, where each trial is a Monte Carlo simulation using the same parameters and initial conditions, but different random
numbers. If standard deviations are also given, then at least 10 trials
were used. (The expression
is used for the standard deviation; the alternative expression involving n
1 in place of n will give
values differing by at most 5%, and this difference would be
undetectable on the graphs.)
Calcium microdomains
Spontaneous opening
The properties of N-type calcium channels indicate that at the
resting potential the average open time of a channel is 0.2 ms and
passes a current of ~2 pA (Bennett et al., 1997a
). However, it is the
longer and much less frequent open times of ~0.8 ms that are likely
to have a major effect on triggering exocytosis. Monte Carlo
simulations have been performed to obtain the concentration profile of
calcium about a single spontaneously opening N-type calcium channel
with each of these sets of characteristics. The Monte Carlo scheme
gives the coordinates of each calcium ion, free or bound, at each time
step, and these can be converted to concentrations using appropriate
binning. To show the change of concentration with distance from the
release site the bins were chosen to be hemispherical shells of radius
r and thickness
r (=20 µm); at a given time
the numbers of each species of particle in a shell (r, r +
r) are counted and then converted to a number density by
dividing by the shell volume 2
r
r, and finally to a
concentration using the fact that 1 µM corresponds to ~600
molecules per µm3. The results are shown in Fig.
2, A
and B in normal coordinates and in Fig. 2, C and
D using logarithmic ordinates. At the end of the 0.2-ms open
time of the channel there is a high concentration of calcium bound to
the fixed buffer in the immediate vicinity of the channel, about 327 µM, which decays approximately biexponentially with length constants
of ~144 nm over the first 100 nm and then 33 nm over the next 200 nm
(Fig. 2, Ac and Cc). In contrast, there is a much
smaller amount of calcium bound to the mobile buffer near the channel,
~100 µM, which also decays away biexponentially with length
constants of ~88 nm and then 38 nm (Fig. 2, Ab and Cb). These effects of the fixed and free buffer ensure a
relatively steep gradient of free calcium near the channel that falls
off from a concentration of 277 µM within 10 nm of the channel with a
length constant of ~33 nm (Fig. 2, Aa and Ca).
Similar results are found for the case in which the channel opens for
longer times, such as 0.8 ms (Fig. 2, B and D).
The main difference is that the buffers retain more calcium for greater
distances from the channel than in the shorter opening time case
(compare Fig. 2 Ab with 2 Bb and 2 Ac
with 2 Bc). Even so, the slope of the free calcium at 30 nm
from the channel remains steeper for the former case (compare Fig. 2
Aa with 2 Ba). However, the free calcium concentration within 10-20 nm of the channel is about the same at the
end of the shorter opening time and the longer opening time, because in
the latter case there has been sufficient time for the endogenous
buffers to exert considerable effect on the free calcium at this
distance. The standard deviations in the extent of free calcium ~30
nm from the channels are very large, and amount to about half the mean
(Fig. 2, Aa and Ba). Thus, even for a
nonstochastically opening channel, there will be large fluctuations in
the calcium concentration at distances from the channel mouth at which
calcium-sensor proteins for exocytosis are expected to be found.

View larger version (28K):
[in this window]
[in a new window]
|
FIGURE 2
The mean and standard deviation of the spatial calcium
concentration profile near a single spontaneously opening channel at
the end of the open time of the channel. The channel opens
deterministically and admits a constant current. The calculations are
performed using the Monte Carlo scheme, which gives the position of
each calcium ion at each time step; these positions are converted to
densities using hemispherical bins of 20-nm thickness. (A)
Results for the average open time of an N-type channel of 0.2 ms (see
Fig. 5 A in Bennett et al., 1995a ) with a current of 2 pA;
the time course of this current is shown as an inset in Aa.
(B) Results for a relatively long open time of 0.8 ms and current
of 2 pA; the time course is shown as an inset in Ba. In each
case, panels a-c give the concentrations of free calcium
([Ca2+]), of calcium bound to the mobile buffer
([CaBm]), and the calcium bound to the fixed buffer
([CaBf]), respectively. (C) and (D)
show the corresponding results using log ordinates. The parameters used
in the calculations are given in Table 1. In each graph, the heavy line
shows the mean concentration (in µM) and the thin lines show one
standard deviation away from the mean; these are the result of 10 Monte
Carlo simulations, each run starting from the same initial conditions
with the same calcium influx (but using different random numbers).
|
|
Evoked opening
For the case of evoked opening the total charge that enters
through a single channel is given by Eq. 2. A histogram showing the
results of 5000 simulations of a single channel under a Hodgkin-Huxley action potential is given in Fig. 3.
The charge turns out to be approximately exponentially distributed; as
calculated from the simulation results, it has mean 0.52 pA · ms
(=0.52 × 10
15 Coulombs) and standard deviation 0.50 pA · ms. (That the charge should be exponentially distributed is
not obvious. For the spontaneous case, the charge through a single
channel is indeed exponentially distributed, but this is a direct
consequence of the exponentially distributed channel open time and the
constant current through it: see Fig. 5 A in Bennett et al.,
1995a
. For the evoked case, there is a complicated interplay between
open time, which is not exponentially distributed, and nonconstant
single channel current.) The mean open duration for an N-type calcium
channel under an action potential is 0.84 ms (see Fig. 4 B
in Bennett et al., 1997a
); given that the average charge is 0.52 pA · ms, then the average current is 0.62 pA. However, as in the
spontaneous case, it is the longer and less frequent open times that
are likely to be important in triggering exocytosis, so consideration
has also been given to an open time of 1.0 ms and a charge of 1.5 pA · ms, giving an average current of 1.5 pA.

View larger version (29K):
[in this window]
[in a new window]
|
FIGURE 3
Frequency distribution of the total calcium charge that
passes through a single N-type channel when it opens under an action
potential. The total charge that enters during a single action
potential is found using Eq. 2, where the opening and closing times,
topen and tclose, and the
single-channel current, ic(t), are
calculated as in Bennett et al. (1997a) . The histogram shows the
frequency of occasions during five thousand action potentials at which
a particular charge (pA · ms) is passed by the channel. (1 pA · ms = 10 15 Coulombs and corresponds to
the charge on 3120 calcium ions.) The histogram is well-fitted by an
exponential distribution with mean 0.52 and standard deviation 0.50 pA · ms.
|
|
The free calcium about a channel opening under an action potential with
these two sets of characteristics (namely 0.62 pA for 0.84 ms and 1.5 pA for 1.0 ms) have therefore been computed using Monte Carlo
simulation. Fig. 4 shows that the longer
duration opening channel has much greater free calcium within 30 nm of the channel (Fig. 4 Ba) than does the shorter duration
opening channel (Fig. 4 Aa), because the former passes 4680 calcium ions and the latter only 1625 ions. As in the spontaneous case,
the standard deviations in the amount of free calcium near the channels are at least half of the mean (Fig. 4, Aa and
Ba), indicating that considerable fluctuations in quantal
release from impulse to impulse may be expected on the basis of the
fluctuations in the amount of calcium that reaches the calcium sensor
proteins for exocytosis.

View larger version (28K):
[in this window]
[in a new window]
|
FIGURE 4
As for Fig. 2, except that the single channel now opens
under an action potential. (A) Results for the average open
time of an N-type channel of 0.84 ms (see Fig. 4 B in
Bennett et al., 1997a ) with a current of 0.62 pA. (B)
Results for a relatively long open time of 1.0 ms and current of 1.5 pA
according to the mean charge in Fig. 3.
|
|
Rapid buffering and linearized diffusion approximation
Fig. 5 shows the levels of free
calcium and of calcium bound to the fixed and mobile buffers as
functions of distance from a channel that passes 2 pA of current and
opens for 0.8 ms; the profiles are shown at the end of the opening
period. The heavy solid lines are the averages of 10 Monte Carlo
simulations. (Compare Fig. 2 B, which shows the same results
together with standard deviations.) The broken lines come from solving
the deterministic differential Eqs. 4-8, which in this case reduce to
one spatial dimension because spherical symmetry allows the Laplacian
operator to be simplified to
2 =
2/
r2 + (2/r)
/
r, where
r is the radial coordinate. The method used is basically
that given in the Appendix of Smith et al. (1996)
, except that a
fourth-order Runge-Kutta routine is used for the time (Press et al.,
1989
). Agreement is excellent except for short distances, where the
Monte Carlo simulations indicate that large fluctuations occur (see
Fig. 2 B for standard deviations). There is also some
discrepancy in [CaBm] at distances >100 nm (Fig. 5
B); this can be traced to an inherent limitation in the
approximation made in treating the mobile buffer in the Monte Carlo
simulation (see the Methods section for a discussion of this).

View larger version (18K):
[in this window]
[in a new window]
|
FIGURE 5
Comparison between the Monte Carlo (MC) calculation of
the calcium profile near a single channel opening spontaneously
(continuous heavy lines) and the results using the
deterministic differential Eqs. 4-8 (dashed lines). Also
shown are the results obtained using the rapid buffering approximation
(RBA) given by Eq. 9 (dotted lines), and in A the
thin continuous line is calculated using the linearized steady-state
approximation (LSS) given by Eq. 10. Calculations are for the long open
time of an N-type channel of 0.8 ms with a current of 2 pA.
A-C give the concentrations of free calcium
([Ca2+]), of calcium bound to the mobile buffer
([CaBm]), and of calcium bound to the fixed buffer
([CaBf]), respectively. The parameters used in the
calculations are given in Table 1. Log ordinates.
|
|
Also shown (dotted lines) are the results obtained using the
rapid buffering approximation (Eq. 9) (Wagner and Keizer, 1994
; Smith
et al., 1996
). Because in the present case the buffer kinetics are fast
compared to the diffusion, it is expected that this approximation will
be good (see Appendix A), and this is indeed borne out by the results
(Fig. 5). Somewhat surprising, however, is that the linearized
steady-state approximation (Pape et al., 1995
; Naraghi and Neher,
1997
), as given by Eq. 10, gives an accurate representation of the free
calcium profile at distances <~100 nm (Fig. 5 A, thin
continuous line); this approximation is derived under the
condition that the mobile buffer is far from saturation, which is not
the case here. (See Fig. 5 B; the total mobile buffer concentration is only 100 µM.)
Ca2+ transients of a varicosity or bouton
The question arises as to whether it is possible to detect the
changes in calcium concentration in the entire volume of a varicosity
or bouton when a calcium channel opens either spontaneously or under an
action potential. Monte Carlo calculations have been made of calcium
transients for the average open times of both the spontaneous and
evoked opening of a calcium channel. The channel is placed in the
center of one of the six walls of a cubic volume with 1-µm side (Fig.
1), these being the approximate dimensions of small varicosities and
boutons. In this case it is important to allow for the action of
calcium pumps, as the only way that calcium ions can be removed from
this volume, after being released from the endogenous buffers, is
through such a mechanism. To this end we have modeled such pumps so
that they may be included in the Monte Carlo simulations and
distributed them over all six walls of the cubic volume (see Methods).
Fig. 6 A shows the results for
the spontaneous opening (0.2 ms and 2 pA), and Fig. 6 B
those for the evoked opening (0.84 ms and 0.62 pA), for the case where no indicator is present. In each case, curve a gives the
mean and standard deviation of the free calcium, b gives the
calcium bound to the fixed buffer, and c gives the calcium
bound to the endogenous mobile buffer. As only the number of free
calcium ions and those attached to buffer within the 1 µm3 volume are determined, spatial inhomogeneities in the
concentration of these throughout the volume during the first few
milliseconds after channel closure are not considered. Upon channel
closure, there is a rapid decrease in free calcium (over microseconds), as it is bound principally to the fixed buffer (Fig. 6). Thereafter, the decline in free calcium is primarily due to the calcium ions released from the buffers finding the pumps on the walls of the 1 µm3 volume. This free calcium falls to within 1/e of its
initial value in ~15 ms (Fig. 6), a time that is mostly governed by
the probability that once an ion hits the wall of the volume it will be
extruded by a pump.

View larger version (20K):
[in this window]
[in a new window]
|
FIGURE 6
The mean and standard deviation of the calcium
concentration in a cubic volume of 1 µm3 about a single
channel in a varicosity or bouton. The concentration is averaged over
the whole cubic volume. (A) Results for the average
spontaneous open time of an N-type channel of 0.2 ms with a current of
2 pA. (B) Results for the average evoked open time of an
N-type channel of 0.84 ms with a current of 0.62 pA. In each case,
curves a-c give the concentrations of free calcium
([Ca2+]), of calcium bound to the mobile buffer
([CaBm]), and the calcium bound to the fixed buffer
([CaBf]), respectively. In each graph the heavy line
shows the mean concentration (in µM) and the thin lines show one
standard deviation away from the mean. Log ordinates.
|
|
Effect of buffers and indicators on Ca2+
The above calculations have all been made using the standard
characteristics of the endogenous buffers given in Table 1. In this
section consideration is given to the effects of varying the parameters
of the mobile and fixed buffers as well as those of the indicator
concentration when furaptra is used as the indicator. The case for
which Monte Carlo simulations have been carried out is that of a
spontaneously opening channel (0.8 ms and 2 pA), which gives the
calcium transients in a varicosity or bouton of volume 1 µm3 shown in Fig. 6. The temporal characteristics of the
signal for calcium bound to furaptra, together with the peak free
calcium transient, have been calculated in each case.
Fig. 7 shows the results of varying the
characteristics of the mobile buffer and indicator on the time at
half-peak of [CaBi] (Fig. 7, A and
B). A 100-fold increase in [Bm]T
produces only a threefold increase in the half-time of the
[CaBi] signal (Fig. 7 A); similar increases in
km+ or Km of the
mobile buffer produce only about a twofold decrease in the half-time of
the [CaBi] transient (Fig. 7 A). There is only
a very small standard deviation about these mean values, so that they
have not been included in the graph. Less than a threefold change
occurs in the half-time of the [CaBi] as the result of a
100-fold increase in the values of [Bi]T and
its ki+ or Ki values
(Fig. 7 B); again there is very little variability associated with these values.

View larger version (25K):
[in this window]
[in a new window]
|
FIGURE 7
The effect of mobile buffer and indicator parameters on
the half-time of the transient for calcium bound to the indicator
furaptra ([CaBi]), upon the opening of a spontaneous
calcium channel (0.8 ms and 2 pA) in a bouton or varicosity of volume 1 µm × 1 µm × 1 µm. Results from Monte Carlo
simulations are given for a range of parameter values for mobile buffer
(Bm) and for indicator (Bi). (A) The
parameter values of the mobile buffer ([Bm]T;
Km; km+) were changed
while all other parameters were maintained at their standard values
(Table 1). (B) The parameter values of the indicator
([Bi]T; Ki;
ki+) were changed while all other parameters
were maintained at their standard values (Table 1). Calcium pumps were
present in the walls of the volume under consideration, as outlined in
the Methods section.
|
|
Fig. 8 shows the results in the case of
varying the characteristics of the fixed buffer and indicator
concentration on the time at half-peak of [CaBi] (Fig. 8,
A and B). A 10-fold change in the values of
[Bf]T and its kf+
can produce very significant changes (of the order of 10-fold), in the
half-time of the [CaBi] transient, at the standard values for the Bm buffer and of furaptra given in Table 1; there
is only a very small variation about these mean values (Fig. 8
A). There is only a small change in the half-time of the
[CaBi] with a 100-fold change in the values of
[Bi], with again very little variation associated with
these values, [Bf] being kept at its standard value given
in Table 1 (Fig. 8 B). These calculations show that the
characteristics of the [CaBi] transient are relatively little affected by changes in the parameters of the mobile buffer or
the indicator compared with changes in the fixed buffe