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Biophys J, August 2000, p. 756-766, Vol. 79, No. 2


and
*Biomembrane Structure Unit, Department of Biochemistry, University
of Oxford, Oxford OX1 3QU, United Kingdom, and
Department of Biochemistry, Groningen Biomolecular
Sciences and Biotechnology Institute, University of Groningen,
9747 AG Groningen, the Netherlands
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ABSTRACT |
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A single-cysteine mutant of the lactose transport protein LacS(C320A/W399C) from Streptococcus thermophilus was selectively labeled with a nitroxide spin label, and its mobility in lipid membranes was studied as a function of its concentration in the membrane by saturation-transfer electron spin resonance. Bovine rhodopsin was also selectively spin-labeled and studied to aid the interpretation of the measurements. Observations of spin-labeled proteins in macroscopically aligned bilayers indicated that the spin label tends to orient so as to reflect the transmembrane orientation of the protein. Rotational correlation times of 1-2 µs for purified spin-labeled bovine rhodopsin in lipid membranes led to viscosities of 2.2 poise for bilayers of dimyristoylphosphatidylcholine (28°C) and 3.0 poise for the specific mixture of lipids used to reconstitute LacS (30°C). The rotational correlation time for LacS did not vary significantly over the range of low concentrations in lipid bilayers, where optimal activity was seen to decrease sharply and was determined to be 9 ± 1 µs (mean ± SD) for these samples. This mobility was interpreted as being too low for a monomer but could correspond to a dimer if the protein self-associates into an elongated configuration within the membrane. Rather than changing its oligomeric state, LacS appeared to become less ordered at the concentrations in aligned membranes exceeding 1:100 (w/w) with respect to the lipid.
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INTRODUCTION |
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The lactose symport protein LacS of
Streptococcus thermophilus belongs to the large class of
secondary transport systems that comprises of several dozen families
(Nikaido and Saier, 1992
; Poolman and Konings, 1993
). As with many of
these transport proteins, LacS is predicted to fold into 12 transmembrane helices but is unusual in that it carries a large (19.5 kDa) hydrophilic C-terminal extension that serves a regulatory function
(Poolman et al., 1989
, 1995
).
LacS has been overexpressed and purified from native membranes to
investigate conditions required for optimal reconstitution of this and
other transport systems into lipid membranes (Knol et al., 1996
).
Optimal reconstitution of detergent-solubilized LacS occurred in lipid
bilayers that were destabilized with nonsolubilizing amounts of
detergent (Knol et al., 1996
, 1998
). However, as illustrated in the
current study, functionally competent reconstitution was only achieved
at very low protein concentration; lipid/protein ratios (L/P) greater
than 100-200 by weight, with specific activities reducing sharply to
low levels as the protein concentration was increased to around
L/P = 50 (w/w). A detailed account of these observations will be
reported elsewhere. As with practically all other transport systems,
the oligomeric state of LacS in the membrane is unknown. The purpose of
the current study was to determine the oligomeric state for LacS,
functionally reconstituted at low protein concentration into a defined
lipid membrane, and further to determine whether this varies as
the specific activity decreases at the higher protein concentrations.
Mutants have been engineered to replace the native cysteine in LacS
(C320A) and to substitute a single cysteine into the transmembrane helix XI or the interhelix loop 10-11, regions predicted to be close
to the substrate binding site in the protein (Poolman et al., 1996
;
Spooner et al., 1999
). Mutants not defective in transport are K373C
(interhelix loop 10-11) and W399C (transmembrane helix XI). Despite
its predicted location at the midpoint of helix XI, Cys399 was accessible to maleimide reagents and
is conceivably located within a translocation channel in the protein.
The LacS(C320A/W399C) mutant was therefore selected as the most likely
one to provide an environment where the dynamics of the spin label will
reflect solely the overall rotational motion of the protein.
The saturation transfer electron spin resonance (ST-ESR) method (Thomas
et al., 1974
) provides access to a motional time scale appropriate for
observing the rotational mobility of proteins in membranes
(10
6 to 10
3 s). The
method usually involves an empirical interpretation of line shapes in
terms of rates of isotropic motion, the relationship of which to the
actual uniaxial mobility in membranes is not straightforward. The
strict interpretation in terms of rotation about the membrane normal
requires that the spin label adopt a unique orientation in the protein
and that this orientation can be defined for the experimental system.
Freed and co-workers have described how macroscopic alignment of
systems for ESR (Ge et al., 1994
), especially lipid membranes, can
greatly improve spectral resolution and the ability to derive detailed
information not readily accessible from normal dispersion samples. For
the current study, conventional ESR observations were made of the
reconstituted membranes that were macroscopically aligned to obtain
information on the orientation of spin label in the protein. The
results indicate that the short-chain spin label used can adopt a
preferred orientation within the reconstituted protein, and this leads
to a less ambiguous determination of rotational motion within the
membrane. Knowledge of spin-label orientation also allows access to
other physical parameters that are important for interpreting protein
mobilities such as the effective membrane viscosity and could provide a
sensitive measure of whether the protein adopts a regular orientation
in its reconstituted state.
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MATERIALS AND METHODS |
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LacS(C320A/W399C)
S. thermophilus ST11(
lacS)
carrying plasmid pGKHis was grown semianaerobically at 42°C in
Elliker broth supplemented with 0.5% (w/v) beef extract, 20 mM
lactose, and 5 µg/ml erythromycin. Using a polymerase chain reaction
approach (Knol et al., 1996
), Trp399 was replaced
with cysteine, using the lacS(C320A) gene in pGKH(C320A) as
the parent. The oligonucleotide used to construct
lacS(C320A/W399C) was
5'CA.AAC.TGT.CTT.GTG.TCG.ACA.TTT
(mutations are underlined). In addition to the TGG (Trp) to TGT (Cys)
change, a BstEII site was created 3 bp downstream from the
TGT codon. The fragment containing the mutant sequence was checked by
nucleotide sequencing, and the resulting plasmid was named
pGKH(C320A/W399C).
All protein purification steps were performed at 4°C. The protein was
purified essentially as described (Knol et al., 1996
), with the
following modifications. Membranes of S. thermophilus were
isolated and solubilized in 15 mM imidazole (pH 8.0), 10% (v/v)
glycerol, 100 mM NaCl, plus 0.5% (w/v) dodecyl maltoside (DDM). After
10-20 min of incubation, insoluble material was removed by
centrifugation (280,000 × g, 15 min). The solubilized
membrane proteins were mixed and incubated for 30 min with Ni-NTA resin (Qiagen; ~4 mg of LacS/ml of resin) that had been equilibrated with
buffer A (15 mM imidazole (pH 8.0), 10% (v/v) glycerol, 100 mM NaCl,
plus 0.05% DDM). The column material was loaded into a Bio-Spin column
(Bio-Rad Laboratories) and washed with 10 column volumes of buffer A
containing 25 mM imidazole. The protein was eluted with 200 mM
imidazole (pH 7.0) containing 0.05% DDM. Subsequently, the protein was
diluted 10-fold with buffer B (5 mM HEPES (pH 7.0) containing 0.05%
DDM). The diluted protein sample was applied to a Bio-Spin column
containing Q-Sepharose fast flow resin (Pharmacia Biotech; 10 mg of
LacS/ml of resin) that had been equilibrated with buffer B. After
washing with 10 column volumes of buffer B plus 25 mM NaCl, the protein
was eluted with buffer B containing 100 mM NaCl. Peak fractions usually
contained 0.6-0.8 mg/ml of LacS. The LacS protein was concentrated
using Microcon-100 filters (Amicon), which avoided concentrating the
surfactant that was not associated with the protein. The LacS
concentration was determined from the
A280, using
= 76,320 M
1 cm
1 (Pace et al.,
1995
) after the appropriate corrections for light scattering (Leach and
Scheraga, 1960
).
Spin labeling of LacS(C320A/W399C) was carried out in 200 mM imidazole (pH 7.0) containing 10% glycerol and 0.05% (w/v) DDM at a LacS concentration of 0.34 mg/ml (i.e., 4.8 µM). Protein was incubated with a fivefold molar excess of 3-maleimido-proxyl spin-label (Fluka) for 1 h at room temperature. The reaction mixture was then diluted ninefold, and unreacted label was removed by column chromatography on Q-Sepharose, as described above.
For protein reconstitution, liposomes of acetone/ether-washed
Escherichia coli lipids and egg yolk phosphatidylcholine
(Avanti Polar Lipids) in the ratio 3:1 (w/w) were made by
freeze-thawing a aqueous dispersion of the lipid mixture (20 mg/ml) in
50 mM phosphate buffer (pH 7.0), containing 2 mM
MgSO4, followed by extrusion through
polycarbonate filters with a 400-nm pore size (Mayer et al., 1986
).
Extruded liposomes at 4 mg/ml of lipid were titrated with the DDM until
saturated with surfactant, before the onset of solubilization (Knol et
al., 1998
), and then incubated (30 min at 20°C) with solubilized
protein at the required ratios with gentle agitation. To remove the
detergent, polystyrene beads (SM2 Biobeads, Biorad) were added at a wet
weight of 80 mg/ml, and the sample was incubated for a further 2 h
at room temperature. Fresh Biobeads were then added twice and
equilibrated at 4°C with the samples, first for 3 h and then
overnight. The proteoliposomes were collected by centrifugation, washed
with 50 mM potassium phosphate (pH 7.0), and stored in liquid nitrogen
or at
70°C. Samples prepared at the L/P used in this work showed no
differences in gross morphology, according to freeze-fracture electron
microscopy. Samples for analysis were thawed rapidly at 37°C and
sedimented by ultracentrifugation (200,000 × g, 10 min) or
aligned on glass plates as described below for reconstituted rhodopsin.
Lactose counterflow activity was determined for proteoliposomes that been extruded through 400-nm polycarbonate filters after thawing. These samples were equilibrated in 50 mM phosphate buffer (pH 7.0) with 2 mM MgSO4 and 10 mM lactose, for 2 h at room temperature. After the sample was concentrated by centrifugation, 1-µl aliquots of the proteoliposome suspension were diluted into 200 µl of the phosphate buffer, containing 2 mM MgSO4 and 9 µM [14C]lactose, making a final lactose concentration of 59 µM. The assay was stopped at various time intervals by diluting the mixture with 2 ml of ice-cold 0.1 M LiCl, and the proteoliposomes were collected on 0.45-µm cellulose nitrate filters. The filters were washed with 2 ml of 0.1 M LiCl, and the retention of radiolabeled lactose was measured by liquid scintillation counting.
Bovine rhodopsin
All preparative and analytical procedures involving bovine
rhodopsin were carried out in dim red light. Rod outer segments were
isolated from fresh bovine retinas (Papermaster, 1982
), and these were
washed with hypotonic buffer (2.5 mM Tris-HCl buffer at pH 7.4 with 1 mM MgCl2) to release the disc membranes. The intact disc membranes containing the rhodopsin were collected by
centrifugation (180,000 × g, 20 min) and rinsed with 15 mM HEPES
buffer (pH 7.0, containing 120 mM NaCl and 1 mM EDTA). Discs were
resuspended in the HEPES buffer to give a rhodopsin concentration of
~2 mg ml
1, according to the absorbance
measured at 500 nm (
= 40 × 103
M
1 cm
1) for aliquots
diluted into a 1% (w/v) solution of hexadecyltrimethylammonium bromide.
Spin labeling of rhodopsin in the disc membranes was carried out after
more accessible cysteines were blocked with N-ethyl maleimide. A procedure similar to that described here (Kusumi et al.,
1980
) was shown to restrict the reaction with maleimide spin label to a
single cysteine within the protein. Disc membranes were first
pretreated with 1 mM NEM at 4°C for 1 h and centrifuged, and the
membrane pellet was then rinsed in the HEPES buffer four times. The
rhodopsin in the disc membranes was then incubated for 16 h at
4°C with a fourfold molar excess of the 3-maleimido-proxyl spin label
(Sigma), rinsed twice with the HEPES buffer, and then solubilized in 50 mM Tris-HCl buffer (pH 7.0) containing 50 mM sodium acetate, 1 mM
CaCl2, 2 mM MnCl2, using
1% (w/v) octylglucoside as the surfactant (Alexis Corp., San Diego,
CA). The protein was purified by affinity chromatography (De Grip,
1982
) on concanavalin A-Sepharose (Sigma). Once adsorbed onto a small
column of concanavalin A-Sepharose (<5 ml), the material was
exhaustively washed with the octylglucoside Tris-HCl buffer (at least
50 bed volumes) before the protein was eluted with the detergent buffer
containing 200 mM methyl mannoside. The rinsing procedure described
here was found to be crucial to ensuring that the purified protein was free from other spin-labeled membrane components. The eluted protein solution was diluted fivefold and concentrated twice with detergent buffer alone, using PM30 ultrafiltration membranes, and then finally concentrated to ~1 mg/ml of protein for reconstitution.
The solubilized spin-labeled protein was mixed with either the E. coli-egg phosphatidylcholine (PC) reconstitution lipid mixture or
dimyristoylphosphatidylcholine (DMPC), both of which had been solubilized by adding a minimal volume of sodium cholate solution (5%
w/v) to their hydrated suspensions. The L/P used was 3.4 (w/w) for the
mixed reconstitution lipids or 3.5 (w/w) for DMPC, both of which
correspond to ~200 lipids per rhodopsin, based on an average
molecular weight for the E. coli and egg PC lipid mixture of
700. The protein-lipid-surfactant mixtures were dialyzed at 4°C
against 1 L of 5 mM HEPES reconstitution buffer (pH 7.5 with 50 mM
NaCl, 0.5 mM EDTA, and 0.1 mM sodium azide) that was changed frequently
over a period of 14 days, with the final stages of detergent removal
assisted by the addition of SM2 Biobeads to the dialysis buffer. The
reconstituted protein could then be sedimented by ultracentrifugation
(200,000 × g, 10 min) for loading into the capillary tubes used
for the ESR measurements. Alternatively, samples of the proteins
reconstituted into lipid membranes were aligned on glass plates
(0.8 × 0.8 cm) by the method of isopotential spin-dry
ultracentrifugation (Clarke et al., 1980
; Gröbner et al., 1997
).
Typically, each plate was loaded with a thin film composed of 0.3 mg of
lipid with up to ~2 nmol of protein in the case of rhodopsin. This
level of loading typically gave films with a uniform appearance and
alignment when examined at low magnification with a microscope with
crossed polarizing filters. Occasionally, membrane films appeared to be
nonuniform to the naked eye and these were not used in the analysis.
Samples of aligned membranes were equilibrated at room temperature in a
chamber at 92% relative humidity for 4 h, before four to eight of
the plates were stacked together and wrapped in polytetrafluoroethylene
tape to prevent drying.
ESR spectroscopy
Conventional and ST-ESR measurements were made with a Bruker ESP
300 spectrometer operating at 9 GHz (X-band). Dispersion (nonaligned)
samples of membranes were loaded in capillary tubes as line samples,
not exceeding 5 mm, and were maintained at 28°C or 30°C for the
measurements. Quartz glassware was used in the standard
TE102 microwave cavity to optimize measuring
sensitivity. Plates containing aligned membranes were secured in a
quartz tube that replaced the standard Dewar assembly in the cavity.
The aligned samples were consequently analyzed only at ambient
temperature (20 ± 1°C) without instrumental temperature
control. The plates were supported with their faces parallel to the
sides of the tube, and the tube was rotated in the cavity to change the
angle of the plates with respect to the direction of the magnetic
field. Procedures used for the ST-ESR measurements broadly correspond to those described previously (Thomas et al., 1974
). Microwave power
levels were adjusted to 0.25G to record ST-ESR spectra, after
calibration with a deoxygenated, 0.9 mM solution of peroxylamine disulfonate (Aldrich) in 10 mM potassium carbonate, with a sample configuration similar to that used for dispersion samples. Calibration of the isotropic rotational correlation times for this method was
accomplished using spin-labeled hemoglobin solution as a standard for
isotropic mobility. Hemoglobin (human, double recrystallized; Sigma)
was spin-labeled as a solution of 100 mg/ml in 100 mM phosphate buffer
at pH 6.8, with two equivalents of 3-maleimido-proxyl spin-label for
1h. After extensive dialysis, the solution was centrifuged (200,000 × g) to remove any aggregated protein and concentrated (~200 mg/ml) by ultrafiltration (Centricon, Amicon). The viscosity of
the protein solution was adjusted by preparing mixtures with glycerol
(Ultrapure; BRL Life Technologies, Gaithersburg, MD), according to
standard viscosity tables (Sheeley, 1932
), and using empirical
temperature relationships (Slie et al., 1966
) to provide an appropriate
range of isotropic correlation times predicted from the Debye relation
(Eq. 1). General details of the ST-ESR measurements were as described
previously (Thomas et al., 1974
).
Data treatment
The experimental strategy followed here was designed to
incorporate all of the information required to properly interpret ST-ESR measurements in terms of the anisotropic rotational mobility of
membrane-reconstituted LacS and then to estimate the effective size of
this protein within the membranes. The first stage of the analysis
involves the empirical treatment of experimental ST-ESR spectra by
comparing their diagnostic peak height ratios, as described (Thomas et
al., 1974
), with those measured from standard samples of spin-labeled
hemoglobin, the isotropic rotational correlation time of which is
obtained from the Debye relation
|
(1) |
Rapp, that takes no account of the particular
anisotropic features of its motion. The theoretical treatment of ST-ESR
line shapes under anisotropic motion (Robinson and Dalton, 1980
; rotational)
and perpendicular (D
; "wobbling") to a single axis. As recognized previously (Esmann et
al., 1987
D
) and within a range of
correlation times of interest here, the apparent correlation time has
the following components:
|
(2) |
is the angle between the nitroxide z axis
and the axis of rotation. As illustrated in Fig.
1, in the molecular fixed principal axis
system, the z axis of the hyperfine interaction tensor is
selected to lie along the 2p
orbital for the unpaired spin,
perpendicular to both the plane of the pyrolidinyl ring and the
x axis, located along the N
O bond. The apparent
correlation time is most sensitive to the anisotropic rotation of the
spin label when the z axis is oriented perpendicular to the
rotation axis (
= 90°) as shown (Fig. 1), whereupon Eq. 2
reduces to
|
|
(3) |
|
(4) |
= 0).
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Anisotropic (uniaxial) rotational diffusion can be related to the
effective dimensions of the protein within the membrane by selecting a
suitable hydrodynamic model, the simplest being that for anisotropic
rotational diffusion of a cylinder with circular cross section about
its long axis (Saffmann and Delbruck, 1975
):
|
(5) |
) of the major component of the A tensor
(z axis) with respect to the diffusional axis in the
membrane (see Fig. 1).
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RESULTS |
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Specific activity of reconstituted LacS
Specific transport activity was determined from the initial rates
of lactose counterflow in extruded vesicles with reconstituted LacS,
and these measurements are shown in Fig.
2 as a function of the lipid-to-protein
ratio. Despite the large excess of lipid present in these samples,
optimal activity was not observed until L/P was ~400 (w/w). Specific
transport activity dropped sharply when L/P was decreased below 200 (w/w) and leveled off at a low value around a L/P = 50 (w/w).
Reconstitutions prepared using alternative surfactants (e.g., Triton
X-100) show some differences in overall protein activity, but the
dependencies on L/P were broadly very similar. More detailed activity
measurements will be published elsewhere. The activity measurements for
the reconstituted system studied here (Fig. 2) define a range of
samples appropriate for the mobility measurements that is confined to
extremely low protein concentrations (L/P
50-400 by wt).
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Conventional ESR on nonaligned samples
Conventional ESR spectra recorded from the nonaligned (dispersion)
samples of reconstituted spin-labeled proteins are shown in Fig.
3, and each is indicative of a single
population of motionally restricted nitroxide spin label. The outer
spectral splitting, arising from the largest component of the nitroxide
hyperfine interaction tensor (A'zz), was
close to 60 G for LacS (Fig. 3 A) in the E. coli-egg PC lipid mixture and 65 G for rhodopsin in either the
lipid mixture or DMPC alone (Fig. 3, B and C).
The splitting from nitroxide in rhodopsin can be assumed to represent the rigid limit value of Azz and
therefore displays no significant motion for this site in either
reconstitution system on this time scale (<10
8
s). The somewhat smaller splitting observed from nitroxide in reconstituted LacS protein suggests that the spin label in this case
experiences some local mobility on this time scale. The motion represented here, however, is still highly constrained and is not
assumed to interfere with the detection of rotational motion occurring
over the longer time scales in the ST-ESR experiments. None of the
spectra from the spin-labeled proteins showed any free or more mobile
nitroxide components that can seriously interfere with the analysis of
line shapes obtained with ST-ESR.
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ST-ESR of reconstituted LacS
After ensuring the removal of nonspecifically attached or more
mobile nitroxide components, the greatest challenge to obtaining reliable mobility measurements from ST-ESR were the extremely low
protein concentrations required to observe either functional LacS (L/P
as low as 400 by weight) or the range of sharply decreasing specific
activity (down to L/P
50 by weight), as illustrated in Fig. 2.
Second-harmonic, 90° out-of-phase ST-ESR spectra recorded from
spin-labeled LacS(C320A/W399C), membrane reconstituted at a L/P between
26 and 400 (w/w), are shown in Fig. 4.
Because of the low levels of spin-labeled protein, the absorption
signal, especially from the weaker samples (higher L/P), show
extraneous background interference in the high-field region of the
spectra. In comparison, the signal in the low-field region is quite
well defined and appears to be free from spectral distortion. Features in this low-field region exhibit high sensitivity to axial motion, over
a wider range of correlation times, than do the strong features in the
central region of the spectra (Fajer and Marsh, 1983
), and the former
are relied upon solely for the analysis reported here. The diagnostic
low-field peak height ratio L'/L, used
throughout, is obtained as illustrated in Fig.
5 A for the spectrum from a rhodopsin sample. The data are summarized in Table
1 for all concentrations of
reconstituted LacS. These values for reconstituted LacS show no
systematic or significant change over the entire range of L/P used.
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The L'/L ratios from nitroxide-labeled hemoglobin
in aqueous-glycerol mixtures provided a good linear calibration over
logarithmic values of
Riso, the predicted (Eq. 1)
correlation time for isotropic rotation, between 6 and 100 µs. The
linear least-squares fitted expression of
L'/L = 2.541 + 0.4310 log10
Riso s
(r > 0.999) was used to calculate the apparent
rotational correlation time (
Rapp in Table 1) of
~18 µs for LacS reconstituted into the lipid mixture.
ST-ESR of reconstituted bovine rhodopsin
High-quality ST-ESR spectra could be recorded from spin-labeled
bovine rhodopsin that was reconstituted at L/P of 200 (mol/mol), as
shown in Fig. 5, A and B. The
L'/L ratios for the protein were quite similar in
the two types of reconstitution lipid (Table 1) and fell below the
linear calibration range used for interpreting the transporter
mobility, described above. Because this was the first time that such
rapid rotational motion had been recorded for rhodopsin by ST-ESR,
considerable care was taken to obtain a reliable calibration for the
low-field diagnostic peak height ratio in the region of short
correlation times. Calibration data were obtained from the
nitroxide-labeled hemoglobin in three different aqueous-glycerol
mixtures measured over a limited temperature range (20-30°C). The
resulting log-linear calibration of L'/L for
shorter correlation times is shown in Fig. 5 C to describe a
part of the calibration that approaches and passes through a minimum,
as reported previously (Thomas et al., 1974
). Small errors in the
composition of these samples are probably the main source of scatter in
the calibration data, but these define the region of higher rotational
mobility well enough for reliable prediction of the short apparent
correlation times for rhodopsin, as given in Table 1
(
Rapp).
Conventional ESR on aligned samples
Conventional ESR measurements of samples of reconstituted protein,
aligned on glass plates, as a function of the angle,
, between the
direction of the magnetic field and the director or diffusional axis of
protein (membrane normal) are shown in Fig. 6. The director or membrane normal is
taken to be perpendicular to the face of the glass plates supporting
the aligned membranes. The series of spectra in Fig. 6,
A-C, show a strong dependence on the macroscopic sample
orientation in the magnetic field. With a unique orientation of
nitroxide in the protein, the z axis will form a
single angle (
) with the axis of ordering (director) that corresponds to the diffusion axis (see Fig. 1). The protein, however, is not ordered in the plane of the membranes, and so the z
axis assumes all orientations around the director. Because the
rotational mobility of the protein is very slow on the time scale of
the conventional measurement, there is no significant averaging of this
orientational distribution in the plane of the membranes, and so
spectra do not simply display the characteristic strong features of the
three hyperfine transitions. Instead, as shown in Fig. 6,
A-C, the spectral anisotropy fragments into a complex arrangement of components, reflecting this nonaveraged orientational distribution in the A tensor. The advantage of the ultraslow protein rotation in these systems is that the conventional ESR line
shapes can respond in a very sensitive way to a change in the
orientation of the A tensor, especially the major
z component, rather than to the orientation of the director
axis. This should, in principle, be favorable for determining a unique orientation with respect to the director. The disadvantage of this
situation is that the resulting line shapes are highly complex and
difficult to resolve and properly interpret. In practice, it proved
very difficult to obtain a satisfactory fit to the complex features in
the spectra with a routine for simulating slow-motional ESR line shapes
(EPRLL simulation program; Schneider and Freed, 1989
). Recent work,
combining observations at much higher fields (Barnes and Freed, 1998
),
has also emphasized the difficulties of analyzing spectral line shapes
from aligned membrane samples recorded at the standard X-band
frequencies. Instead, we rely on a more empirical interpretation of the
gross changes observed in the spectra that show a distinct broadening
and collapse in the spectral anisotropy with changes in sample
orientation in the magnetic field, particularly in the low-field
regions. These changes are traced by the broken lines in Fig. 6,
A-C, which are not manifested as smoothly shifting
splittings but rather as a redistribution of spectral intensity between
outer and inner components, because of the lack of significant motional
averaging in this case. Such behavior should only be possible for
orientations of the nitroxide z axis that are close to being
colinear with or orthogonal to the director, because it is only in
these cases that the random distribution of orientations within the
plane of the membrane can be effectively coaligned with or away from the direction of the magnetic field. Because the collapse in spectral anisotropy in the low-field region occurs with
between 30° and 0° for rhodopsin in the E. coli-egg PC lipid mixture and
at ~0° for both rhodopsin in DMPC and LacS in the E. coli-egg PC lipid mixture, then based on the above arguments, the
z axis of spin label in each of these systems can be assumed
to be directed away from the field and close to being orthogonal to the
director (
= 90°). Consistent with an orthogonal orientation
of the z axes is the observation that these would appear to
lie mostly along the magnetic field, giving maximum spectral
anisotropy, when the director is positioned away from the field
(
= 90°).
|
The intensity changes occurring in the low-field regions of Fig. 6,
A-C, appear to be largely complete, with little nonshifted signal, as far as can be determined at these measuring sensitivities. This provides a reasonable assurance that spin label does indeed tend
to be homogeneously oriented with respect to the director axis and that
the membranes are well aligned with respect to this axis. There is a
suggestion in Fig. 6 C, however, that a small but
significant portion of the spin label in LacS reconstituted at a L/P of
100 (w/w) may not be uniformly oriented and remains unshifted in the
low-field region at
= 0°. This is poorly defined at L/P = 100, but the proportion of nonshifted signal increases progressively
as the protein concentration is increased further, until at a L/P of 10 (w/w) the aligned membranes only display features characteristic of
dispersion samples and show no significant change in line shape between
= 0° and 90°, as shown in Fig. 6 D. This would
appear to represent a complete loss of uniformity in spin-label
orientation at the higher protein concentration. The membrane films
prepared at L/P = 10 (w/w) appeared to be as uniform and well
ordered as those prepared at higher L/P, indicating that the
protein itself was not well ordered in the membranes, at least in the
environment of the attached spin label. Because of the lack of any
homogeneous alignment at L/P = 10, no ST-ESR data were sought for
this or any higher protein concentration in the lipid membranes.
| |
DISCUSSION |
|---|
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The results obtained with bovine rhodopsin standard are not
typical of the mobilities reported from ST-ESR for this protein and so
warrant some discussion before being used for interpreting the
measurements of membrane-reconstituted LacS. The specific site of spin
labeling in rhodopsin was not determined here but should correspond to
a cysteine that is located within the transmembrane portion of the
protein and is most accessible to the cytoplasmic surface of the
protein. According to recent structural predictions on the
transmembrane portion of bovine rhodopsin (Pogozheva et al., 1997
),
these requirements would be best satisfied by
Cys222, whereas other possible candidates within
the transmembrane segment, Cys167 and
Cys264, appear to be more deeply buried and
closer to the intradiscal surface, based on this model (Pogozheva et
al., 1997
). In another spin-label study on rhodopsin (Farahbakhsh et
al., 1992
), Cys222 was also identified as a
likely site available for selective spin labeling, after cytoplasmic
surface cysteines are blocked.
The apparent correlation times (
Rapp)
previously recorded from ST-ESR measurements of spin-labeled rhodopsin,
based on the analysis in the low-field spectral region, have been quite
variable but typically fall around 20 µs (Baroin et al., 1977
; Kusumi
et al., 1978
). These mobilities were very different from that derived from recording the transient dichroism of rhodopsin in the frog photoreceptor membranes (Cone, 1972
), which equates to a rotational correlation time of just 3.3 µs. We report here the first ST-ESR measurements of rhodopsin that are consistent with these optical measurements and are feasible for the size of this protein in its
monomeric state. The actual rotational correlation times measured here
(Table 1), between 1 and 2 µs, could be expected to be somewhat shorter than that determined in the photoreceptor membranes because of
the higher lipid content in our reconstituted systems. These are
equivalent to a L/P mol ratio of 200, as opposed to ~65-70:1 in the
photoreceptor membranes (Daemen, 1973
). Previous measurements (Kusumi
et al., 1980
) have indicated that the rotational mobility of rhodopsin
reconstituted into lipid membranes begins to decrease significantly at
L/P below 150 (mol/mol), possibly because of some self-association of
the protein. This can account for the nominal differences between the
correlation times reported here for rhodopsin mobility and those
measured optically in photoreceptor membranes, but not for the much
longer correlation times obtained previously by ST-ESR. Insufficient
purification of spin-labeled rhodopsin for the current study showed
that trace amounts of more mobile spin-label impurity have a profound
effect on the interpretation of ST-ESR spectra. Signal from these
components adds to the portion of the spectra between the low-field
turning points (around L' in Fig. 5 A), leading
to anomalously high values of L'/L and
consequently larger values of
Riso. It was concluded
that reliable use of ST-ESR for determining protein mobilities in
membranes cannot tolerate even low levels of such impurity, and that
previously reported measurements, predicting significantly lower
mobilities than reported here, are likely to have been affected by
small amounts of more mobile spin-labeled components.
The rhodopsin mobilities reported here can be applied with some
confidence to characterize the lipid membranes used to reconstitute LacS. The crystallographic data currently available for bovine rhodopsin (Krebs et al., 1998
) are good enough to allow the use of a
hydrodynamic model that takes account of the nonspherical cross section
that the protein presents to the membrane. The rotational diffusion of
a protein with a symmetrical ellipsoidal cross section is given by
(Jähnig, 1986
)
|
(6) |
The greatest degree of uncertainty in the measurements made here lies
in the estimation of orientations of the spin-label z axis.
Arriving at somewhat lower viscosities for DMPC bilayers than reported
by Cherry and Godfrey (1981)
provides some confidence in the large or
limiting values of
deduced from the spectra of aligned membranes
(60° in the E. coli-egg PC lipids and 90° in DMPC). This
is because smaller orientations than used here would infer shorter
correlation times for rhodopsin and even lower estimates of the
membrane viscosity. Quite apart from the absolute values of membrane
viscosity, it is generally preferred, wherever possible, to interpret
results using those parameters obtained with the same technique. This
is finally possible for interpreting the mobility of membrane
reconstituted LacS, as described below.
The general conclusion from the observations of selectively labeled
protein in aligned membranes, that spin label prefers to orient with
its nitroxide z axes orthogonal to the membrane normal,
corresponds to the case illustrated in Fig. 1 and is the orientation
that exhibits maximum sensitivity to the rotational motion. The main
constraining feature for this alignment may well be that the
pyrrolidinyl ring is made to coalign with the diffusion axis, because
of favorable van der Waals interactions with surfaces of the
transmembrane helical segments in the protein. The N-O bond, on the
other hand, may be allowed all possible orientations within the
x-y plane of the principal axis system, shown in
Fig. 1. With
= 90° for the nitroxide z axis in
spin-labeled LacS, the uniaxial rotational correlation time
(
R
) for LacS in the E. coli-egg
PC lipid membranes is calculated to be 9 ± 1 µs (mean ± SD), by combining data over the entire range of protein concentrations
studied by ST-ESR (Table 1). Using the simplest hydrodynamic model (Eq. 5) with the lipid viscosity determined here, this correlation time
predicts an effective volume, Ve, for
LacS of 1.9 × 105 Å3
in the lipid membrane, which corresponds to an effective molecular mass
of 150 kDa, using a partial specific volume of 0.76 cm3/g. This is reasonably close to being twice
the monomeric molecular mass of LacS, which is 69.5 kDa, but 19 kDa of
this resides in a C-terminal extension or hydrophilic IIA domain that
is not predicted to enter the bilayer.
The above calculation was based on the assumption of a circular cross
section for LacS in the membranes, which will overestimate the
effective volume of protein if the mobility of the protein is actually
hindered by its presenting a flattened cross section to the membrane. A
compact symmetrical ellipsoidal arrangement of the 12 transmembrane
helices predicted for LacS is illustrated in Fig.
7; it has semiaxes a = 23.5 Å and b = 16.5 Å, assuming an interhelical
distance of 10 Å. The appropriate hydrodynamic model (Eq. 6) predicts
a rotational correlation time of 2.8 µs for a monomer having this
configuration in the lipid membrane of viscosity determined here. This
greater than threefold difference from the observed mobility is
expected to be well outside the experimental uncertainty in the
methods. Judging by the mobilities measured for rhodopsin and the
resulting values for membrane viscosity, it is also unlikely that the
methods have greatly overestimated the correlation times for protein
rotation in the membranes. A dimer of the idealized structure in Fig. 7
would have a correlation time of 5.1 µs if self-association extends
along the shorter axes (side by side, giving a = 31.0 Å and b = 23.5 Å) or 8.4 µs if dimerization were to
extend along the longer axes (end to end, for a = 47.0 Å and b = 16.5 Å). The experimentally determined correlation time for LacS in the lipid bilayers therefore fits quite
well with a dimer, if we were to assume the most elongated configuration possible within the membrane. At the same time, we cannot
rule out the possibility that the oligomeric state of LacS is larger
than that of a dimer. In contrast to the LacS protein of S. thermophilus, the lactose transport system LacY of E. coli was deduced to be monomeric in DMPC membranes based on
phosphorescence anisotropy measurements (Dornmair et al., 1985
). This
effective size was arrived at by the use of higher values of lipid
membrane viscosity than determined here. It is therefore more relevant to compare the rotational mobilities alone for the two transport systems. The rotational relaxation time (inverse rotational diffusion coefficient) reported for LacY was 24 µs (Dornmair et al., 1985
), which is equivalent to a correlation time of 4 µs (from Eq. 3), close
to half that reported here for LacS. The differences in rotational
correlation times measured between LacS and LacY could therefore
reflect real differences in the oligomeric states of these proteins.
Although the 12 helix transport proteins are often thought to have a
monomeric structure in the membrane (Poolman and Konings, 1993
), this
study, as well as work currently undertaken on the oligomeric state of
LacS in the detergent-solubilized state (Friesen and Poolman,
unpublished work), strongly indicates that this is not generally true.
|
The mobility of LacS in the lipid bilayers did not vary significantly
over the range of L/P between 400 and 26 (w/w), where the protein
specific activity is seen to decrease sharply. Membranes that were
macroscopically aligned on glass plates showed increasing amounts of
randomly oriented nitroxide spin label as the protein concentration was
increased above a L/P of 100 (w/w), until at a L/P of 10 (w/w) it was
not possible to distinguish any remaining nitroxide in the protein that
was uniformly oriented. In the absence of any other perturbation, the
protein would be expected to orient well throughout this concentration
range; the 10:1 weight ratio of lipid to protein still represents a
1000-fold molar excess of lipid, which is expected to support well the
protein in the aligned membranes. It seems more likely, therefore, that
these observations are detecting structural heterogeneity that develops in the protein at the higher concentrations in the lipid bilayers. These changes correlate roughly with the functioning of transporter because the activity (Fig. 2) and affinity constant (unpublished work)
for transport were decreased sharply at a L/P around 100 (w/w).
Interestingly, the reduction in activity of LacY with decreasing L/P,
occurring at much higher concentrations in lipid membranes than studied
here for LacS, has been attributed to a progressive increase in the
average helical tilt of the protein in the lipid membranes (Le Coutre
et al., 1997
). The observations reported here for aligned membranes are
difficult to account for in terms of a cooperative tilting of
transmembrane segments of LacS in the membranes, unless this leads to a
strong perturbation in the local structure around spin label in the protein.
A loss in uniform orientation of spin label was not evident in the ST-ESR measurements of the dispersion samples at higher protein concentration. This should not be taken to mean that such changes do not occur in the normal dispersion samples, but can be explained by the bias of the ST-ESR measurement toward the larger orientations of the nitroxide z axes with respect to the axis of rotational diffusion (membrane normal). The population distribution of the random orientations will also be skewed toward the larger orientations with respect to the single rotation axis. Conversion from uniform orientations, predicted here to be close to their limiting value (90°), to a random distribution of orientations will therefore retain sensitivity to the large orientations such that this change should prove difficult to detect by ST-ESR at the measuring sensitivities obtainable for the LacS system. Although the significance of these structural changes for LacS remains unclear, the use of aligned membranes for spatial observations of reconstituted protein containing judiciously located spin labels could provide a valuable means of detecting structural perturbations that affect protein function.
| |
ACKNOWLEDGMENTS |
|---|
The authors are grateful to Dr. D. Marsh (Göttingen) for
advice on interpreting ST-ESR data and to Prof. J. Freed and Dr. D. Crepeau (Ithaca, NY) for making available a current version of the
original simulation package described by Schneider and Freed (1989)
.
This work was supported by funding from the European Communities (grant BIO-4-CT-960129).
| |
FOOTNOTES |
|---|
Received for publication 17 December 1999 and in final form 27 April 2000.
Address reprint requests to Dr. Paul Spooner, Biomembrane Structure Unit, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, U.K. Tel.: +44-1865-275270; Fax: +44-1865-275259; E-mail: spooner{at}bioch.ox.ac.uk.
| |
REFERENCES |
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-helical bundle of rhodopsin: distance geometry calculations with hydrogen bonding constraints.
Biophys. J.
72:1963-1985[Abstract].
Biophys J, August 2000, p. 756-766, Vol. 79, No. 2
© 2000 by the Biophysical Society 0006-3495/00/08/756/11 $2.00
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