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Biophys J, November 2000, p. 2624-2631, Vol. 79, No. 5



*Département de Biologie Cellulaire et Moléculaire,
Section de Biophysique des Protéines et des Membranes, CEA and
URA CNRS 2096, Centre d'Etudes de Saclay, 91191 Gif sur Yvette Cedex,
France;
Université d'Evry-Val d'Essonne, 91025 Evry Cedex, France;
Unité de Chimie Organique, URA
CNRS 487, Institut Pasteur, 75724 Paris Cedex 15, France; and
§Université Pierre et Marie Curie, 75005 Paris,
France
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ABSTRACT |
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PMP1 is a 38-residue plasma membrane protein of the yeast Saccharomyces cerevisiae that regulates the activity of the H+-ATPase. The cytoplasmic domain conformation results in a specific interfacial distribution of five basic side chains, thought to strongly interact with anionic phospholipids. We have used the PMP1 18-38 fragment to carry out a deuterium nuclear magnetic resonance (2H-NMR) study for investigating the interactions between the PMP1 cytoplasmic domain and phosphatidylserines. For this purpose, mixed bilayers of 1-palmitoyl, 2-oleoyl-sn-glycero-3-phosphocholine (POPC) and 1-palmitoyl, 2-oleoyl-sn-glycero-3-phosphoserine (POPS) were used as model membranes (POPC/POPS 5:1, m/m). Spectra of headgroup- and chain-deuterated POPC and POPS phospholipids, POPC-d4, POPC-d31, POPS-d3, and POPS-d31, were recorded at different temperatures and for various concentrations of the PMP1 fragment. Data obtained from POPS deuterons revealed the formation of specific peptide-POPS complexes giving rise to a slow exchange between free and bound PS lipids, scarcely observed in solid-state NMR studies of lipid-peptide/protein interactions. The stoichiometry of the complex (8 POPS per peptide) was determined and its significance is discussed. The data obtained with headgroup-deuterated POPC were rationalized with a model that integrates the electrostatic perturbation induced by the cationic peptide on the negatively charged membrane interface, and a "spacer" effect due to the intercalation of POPS/PMP1f complexes between choline headgroups.
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INTRODUCTION |
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It is now well established that specific
lipid-protein interactions are involved in numerous biochemical events
associated with membrane functions. In particular, the role of anionic
phospholipids in protein insertion and translocation (Van Klompenburg
and de Kruijff, 1998
; Von Heijne, 1992
) and in signaling pathways
(Newton, 1998
; Zwaal et al., 1998
) has been extensively investigated.
Specific lipid-protein association also leads to lateral domain
formation whose biological role is now better understood (Kurzchalia
and Parton, 1999
; Sabra and Mouritsen, 1998
). However, the molecular mechanisms that govern the specificity of lipid-protein interactions are far from be fully characterized. This is partly due to the complexity of the interfacial medium, both in terms of structural heterogeneity and dynamics (White and Wimley, 1998
).
As shown in a previous work (Beswick et al., 1998a
), PMP1, a small
plasma membrane protein of the yeast Saccharomyces
cerevisiae that regulates the activity of the
H+-ATPase (Navarre et al., 1992
, 1994
), should
constitute a suitable simple model for exploring lipid-protein
specificity. The PMP1 sequence is the following:
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The conformation of a synthetic fragment of PMP1 solubilized in
perdeuterated dodecylphosphocholine micelles has been determined by
1H-NMR (Beswick et al., 1998a
). This fragment,
referred as PMP1f in the following, spans the C-terminal region of
PMP1, A18-F38 (bold
residues in the sequence aforementioned). It comprises a part of the
hydrophobic segment and the whole cytoplasmic domain, whose five basic
side chains are specifically distributed at the membrane interface and
are thought to strongly interact with anionic phospholipids.
Solid-state 2H-NMR spectroscopy enable the
investigation of protein-membrane interactions (for a recent review see
Watts, 1998
) in multilamellar bilayer membranes, which avoid
peptide-induced aggregation artifacts reported recently with
unilamellar lipid vesicles (Murray et al., 1999
). We are presenting an
exhaustive 2H-NMR study of the interactions
between PMP1f and anionic phospholipids. For this purpose, selectively
deuterated mixed POPC/POPS 5:1 multilamellar bilayers were used as
membrane models. Spectra of headgroup- and chain-deuterated POPC and
POPS phospholipids, POPC-d4, POPC-d31, POPS-d3, and POPS-d31, were
recorded at different temperatures and for various concentrations of PMP1f.
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MATERIALS AND METHODS |
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Peptide synthesis
The PMP1 fragment, PMP1f, was synthesized as previously reported
in Beswick et al., 1998a
.
Sample preparations
All lipids, including deuterated POPC-d4, POPC-d31, POPS-d3, and
POPS-d31 were purchased from Avanti Polar Lipids (Alabaster, AL). POPC-d4 and POPS-d3 are deuterated at positions
and
of their respective headgroups. The palmitoyl chain of POPC-d31 and POPS-d31 is uniformly deuterated. POPS, POPS-d3, and POPS-d31 were
under their sodium salt form. Liposomes were prepared by mixing lipid
chloroform solutions in a PC/PS molar ratio of 5:1 and methanolic
solutions of PMP1 fragment. The chosen PC/PS ratio constitutes a good
compromise between a realistic proportion of PS in the membrane
cytoplasmic leaflet and a satisfactory sensitivity for the PS deuteron
signals. The solvent was then removed by evaporation under
N2. The solid residues were dried under vacuum
(10
2 mm Hg) for 12 h
and dispersed by continuous vortexing at 20°C in 100-500 µl of
Tris buffer (50 mM in deuterium depleted water (Eurisotop, France) pH
7.0, 40 mM NaCl) giving ~100 mM lipid dispersions.
2H-NMR experiments
2H-NMR spectra were recorded at 46 MHz on
a Bruker DMX 300 spectrometer equipped with a probe specifically
designed for solid-state deuterium NMR experiments (Morris Ins.,
Canada). Spectra were acquired at different temperatures in a 0-37°C
range with a dwell time of 2 µs, 4 K data points, and a recycling
time of 50 or 200 ms for headgroup- or chain-deuterated lipids,
respectively. The T1 values of
headgroup deuterons are small (~10 ms), so recycling delay of 50 ms
can be used without significant loss of intensity. As a control
experiment, spectra of headgroup-deuterated POPC and POPS recorded with
recycling delay of either 50 or 500 ms were found to be superimposable.
The larger recycling (200 ms) delay with chain-deuterated phospholipids
is needed because of the larger T1
(~50 ms) of the CH2 groups located at the end
of the lipid acyl chains (Davis, 1983
). A quadrupolar echo pulse sequence (Davis et al., 1976
) was used with a pulse length of 3 µs
and pulse separation of 40 µs. Oriented 2H-NMR
spectra (0°) were obtained by the numerical De-Pake-ing procedure
described by Sternin et al. (1983)
. The method of moments was applied
to the chain deuteron spectra (Davis, 1979
; Davis et al., 1979
).
Building the PMP1 working model
The starting model was constructed by docking eight PS molecules against the NMR-derived structure of the PMP1 fragment. Low-temperature (50 K) dynamics and minimization were performed in vacuum for annealing the molecular ensemble and to obtain preliminary information on the interactions between lipid polar headgroups and peptide side chains. The calculations were done with the SYBYL Software (TRIPOS, Inc.).
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RESULTS |
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Characterization of mixed POPC/POPS 5:1 model membranes
Before investigating the effect of PMP1f on POPC/POPS 5:1
membranes, we analyzed the behavior of these mixed membranes with the
temperature, as reported by the 2H-NMR spectra of
POPC-d31/POPS and POPC/POPS-d31 samples (data not shown). We found that
both the POPC-d31 and POPS-d31 signals conserve the characteristics of
liquid crystalline phases between 37 and 10°C. We therefore performed
our further experiments within a 10-37°C temperature range. Thus,
our model membranes conserve the conditions of a homogeneous fluid
phase, in good agreement with the available PC/PS phase diagrams
(Silvius and Gagné, 1984
) and previous
2H-NMR data obtained with similar POPC/POPS 5:1
membranes (Roux and Bloom, 1990
, 1991
).
2H-NMR experiments were then performed on
selectively deuterated POPC/POPS 5:1 membranes containing increasing
amounts of PMP1f. For the sake of clarity, the relative PMP1f
concentration R is expressed with respect to the POPS
concentration, i.e., R = [PMP1f]/[POPS]. Dividing
the R value by 6 (5 PC + 1 PS) gives the peptide-to-total phospholipid (PL) concentration ratio, [PMP1f]/[PL].
PMP1f with POPC/POPS-d3 membranes
2H-NMR spectra of membranes containing
headgroup-deuterated POPS (POPS-d3) display three resolved quadrupolar
splittings attributed to the
1,
2, and
deuterons of the serine moiety. As
shown in Fig. 1, the largest quadrupolar
splittings correspond to the
1 and
deuterons, while the
2 signal is overlapped by
the residual water resonance (Roux and Bloom, 1990
). Addition of PMP1f
to POPC/POPS-d3 5:1 membranes induces both a progressive increase of
the line-widths and the appearance of a very broad component. The
resolved serine signals become hardly discernible at R = 0.3 and totally disappear when R reaches 0.5. The
evolution of the POPS-d3 spectrum upon addition of PMP1f to POPC/POPS
5:1 membranes dramatically contrasts with that of POPC-d4 in identical
mixed membranes, for which only a slight line-broadening is observed,
as discussed below. The broad component reveals the existence of POPS
molecules whose headgroup motions are severely restricted. Such a
component associated with a progressive disappearance of the resolved
POPS-d3 signals indicates the formation of specific PMP1f-POPS
complexes
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PMP1f with POPC/POPS-d31 membranes
Fig. 2 A shows the evolution of the 2H-NMR powder spectrum of POPC/POPS-d31 5:1 membranes at 20°C upon addition of PMP1f. On increasing the PMP1f concentration, a continuous broadening of the POPS-d31 signal is observed. Examination of the corresponding De-Paked spectra (Fig. 2 B) reveals the appearance of a second signal whose maximum quadrupolar splitting (31.5 kHz) is significantly greater than that observed for the PMP1f-free sample (29 kHz). On increasing the PMP1f concentration, the intensity of the second component increases at the expense of the PMP1f-free signal, which totally disappears at R = 0.4. The POPS-d31 De-Paked spectra clearly show the existence of a slow exchange at the 2H-NMR time scale between two POPS species. In agreement with the POPS-d3 data, the evolution of the POPS-d31 spectrum is consistent with the formation of PMP1f-POPS complexes. From the difference observed between the maximum quadrupolar splittings of the two corresponding signals (2.5 kHz), an upper limit of 0.4 ms can be estimated for the exchange time between free and bound POPS molecules. When R is further increased up to 0.5 the spectrum becomes dramatically broadened, while the maximum quadrupolar splitting is severely reduced. Such a behavior indicates that a transition in the lipid-peptide organization of the complexes occurs when R exceeds 0.4. Analysis of this transition is out of the scope of this paper.
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Considering that the De-Paked spectrum obtained at R = 0.4 corresponds to POPS molecules bound to PMP1f, the approximate ratio of peptide-bound to free POPS for different R values can be evaluated. This was achieved by estimating the proportion of the spectrum obtained at R = 0.4, present in the other spectra obtained at lower R values (Fig. 3 A). Conversely, we estimated the proportion of the spectrum corresponding to POPC/POPS-d31 membranes at R = 0, present in the spectra recorded after addition of PMP1f (Fig. 3 B). The two data sets obtained independently are in reasonable agreement. The amount of peptide-bound POPS, normalized with respect to the PMP1f concentration, was plotted versus the concentration ratio [POPS]/[PMP1f], i.e., 1/R (Fig. 4). A straightforward analysis of the resulting binding curve indicates that one PMP1f molecule can bind a maximum of 8 POPS molecules.
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PMP1f with POPC-d31/POPS and POPC-d4/POPS membranes
In our previous paper devoted to PMP1f (Beswick et al., 1998a
), we
showed that, except for a slight broadening, the presence of PMP1f does
not affect the POPC-d31 signals, both in pure POPC-d31 and mixed
POPC-d31/POPS membranes. New experiments performed on the full
10-37°C range showed that there is no peptide-induced second
component, and that the palmitoyl chain order parameters and the first
and second moments of the powder patterns are similar for all samples
with or without PMP1f (<10% changes, data not shown). In contrast
with the POPC-d31 signal, the PC headgroup
and
quadrupolar
splittings (

and 

) of POPC-d4/POPS membranes are
sensitive to the addition of PMP1f, although no second component is
observed. At low temperature and high PMP1f concentration, 

and 

tend toward their values observed for pure POPC
membranes. Given our results obtained with deuterated POPS, we thus
performed an exhaustive set of experiments on POPC-d4/POPS membranes in order to more precisely monitor the formation of POPS-PMP1f complexes through the variations of 

and 

of the choline headgroup.
Fig. 5 displays the quadrupolar
splittings 

and 

obtained for POPC-d4/POPS/PMP1f
membranes containing increasing amounts of PMP1f and measured at
different temperatures. On increasing the PMP1f concentration
(R) at 10°C, 

decreases while 

increases. The same holds for 

at all temperatures, but not
for 

, which appears to be less and less sensitive to the
peptide insertion when the temperature is increased. At 37°C the
quadrupolar splitting is quasi-constant. We can thus distinguish two
limiting cases of the PMP1f-induced perturbations of POPC headgroups:
1) at low temperature, the PMP1f incorporation in POPC/POPS membranes
leads to opposite changes of the 

and 

quadrupolar
splittings, one being increased, while the other is decreased, and 2)
at high temperature, 

is decreased and 

is not
affected.
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DISCUSSION |
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Observation of two separate components associated with bulk and
protein-bound lipids is rather exceptional in solid-state NMR studies
of membrane systems. There are nevertheless some examples (Jordi et
al., 1990
; Carbone and Macdonald, 1996
; Saurel et al., 1998
), all
dealing with mixed membranes comprising anionic phospholipids (phosphatidylserine, phosphatidylglycerol). Surprisingly, among the
numerous deuterium NMR studies devoted to lipid-protein interactions (Watts, 1998
), especially those concerning the specificity of anionic
phospholipids, only a few used chain-deuterated phosphatidylserine (Devaux et al., 1986
; Jordi et al., 1990
; De Kroon et al., 1991
; Saurel
et al., 1998
). However, they constitute a priori suitable probes in
this context. In particular, the first deuterons of the PS acyl chains
giving rise to the largest quadrupolar splittings experience more
restricted segmental motions than other deuterons (except for those of
the glycerol moiety). For given relative variations, the quadrupolar
splittings of the acyl chains will give larger absolute variations than
the small splittings of the polar headgroups, and should therefore
exhibit an enhanced sensitivity to changes of the environment.
Stoichiometry of the PMP1f-POPS complex
The present work shows a favorable case where the large
quadrupolar splitting of the POPS acyl chain plateau deuterons allows the separation of two spectral components, enabling the precise investigation of the POPS-PMP1f complexes. The data indicate that PMP1f
is able to form a complex with about eight POPS molecules. We have
already shown by 1H-NMR that in a micellar
environment, the peptide adopts a unique long helix conformation,
extending from the N-terminus up to Q32 (Beswick
et al., 1998a
). The helix thus includes the hydrophobic segment
A18-I24, which is embedded
in the micelle hydrophobic core, and a part of the charged cytoplasmic
domain, i.e., Y25-Q32. The
amphipathic motif Y25RKW28
determines the interfacial location of the cytoplasmic domain. The
helix is followed by a loop,
R33-F38, whose C-terminal
extremity folds back toward the micelle interior (Beswick et al.,
1998b
). The PMP1f conformation results in a crown-like interfacial
distribution of the five basic and three glutamine side chain
extremities (R26, K27,
R31, R33,
R37, Q29,
Q32, Q36) around the helix.
Such a distribution of basic side chains combined with the
exceptionally high proportion of negatively charged lipids found in the
cytoplasmic leaflet of the yeast plasma membrane (Zinser and Daum,
1995
) suggests that the cytoplasmic domain of PMP1 could strongly
interact with anionic phospholipids. Because the effective charge of
the peptide is +5 (4 Arg, 1 Lys), a complex comprising about five POPS
molecules would be expected. A stoichiometry of eight PS per PMP1f
therefore suggests that the three glutamine residues, the remaining
polar residues of the PMP1 cytoplasmic domain, also contribute to the
lipid-peptide interactions. In fact, it is not necessary to interpret
the stoichiometry of the complex as resulting from the number of
interacting residues, but simply by considering the maximum
accessibility offered to PS molecules by the peptide, given its
conformation. Molecular modeling clearly shows that a maximum of about
eight lipid molecules can be simultaneously in contact with the peptide
area. A working model of a complex of PMP1f with eight PS molecules
obtained by a simple docking procedure in vacuum and energy
minimization indicates that the Arg, Lys, and Gln side chains readily
form a wide hydrogen bond network with the phosphate and carboxylate
groups of PS headgroups. Within this network, an Arg side chain can
form salt bridges with two PS negatively charged groups. Such
electrostatic interactions most probably constitute the main
long-range driving forces responsible for the PMP1-PS complex
formation. However, our preliminary model indicates that the glutamine
side chains, acting both as H-bond donor and acceptor groups,
contribute efficiently to the stability of the PMP1-PS complex.
PMP1f-induced electrostatic perturbations of POPC headgroups
The incorporation of positively charged PMP1f in POPC/POPS 5:1 is
expected to change the electrical properties of the membrane surface.
Since the pioneering work of J. Seelig (Brown and Seelig, 1977
; Akutsu
and Seelig, 1981
), it has been well known that the phosphatidylcholine
and
deuteron signals constitute suitable parameters for probing
membrane electrical perturbation in liquid crystalline phases, through
the "molecular voltmeter effect" of the choline headgroup (Seelig
et al., 1987
).
When positive ions or positively charged polypeptides are added to
zwitterionic or negatively charged membranes, the conformational response of PC headgroups is characterized by opposite variations of
the choline quadrupolar splittings: 

decrease and 

increase. Another type of "conformational response" is associated
with the increase of the specific volume occupied by the choline
headgroup. This response, characterized by a reduction of the
splitting, can simply result from a temperature increase. It can be
viewed in Fig. 5 with the data obtained at a given peptide
concentration. For instance, reducing the temperature from 37°C to
10°C in the absence of peptide (R = 0), leads to a
large increase of 

(~+60%), while 

is barely
affected (~+6%). Variations of 

can also be observed at a
fixed temperature, in the presence of molecules such as cholesterol or
chloroform, acting as a "spacer" between PC molecules (Brown and
Seelig, 1978
; Akutsu and Seelig, 1981
). These particular perturbations,
which specifically change the value of 

, and which we will
refer to as the "spacer" effect in the following, are probably
related to a weakening, or even the suppression in the case of
cholesterol, of the intermolecular interactions between adjacent
choline headgroups (Brown and Seelig, 1978
). Indeed, the "spacer"
effect counteracts the electrical effect induced on 

by
positively charged molecules when both types of perturbation take
place. We believe that the PMP1f-induced variations of the
and
quadrupolar splittings reported in this paper can be rationalized by a
combination of the electrical and "spacer" conformational response.
At 10°C a nearly pure electrical effect is observed, reflecting the
change of the membrane surface charge due to the increasing amounts of
positively charged PMP1f. Between 15 and 37°C, when R
increases, the slope of the 

versus R
plot progressively decreases on increasing the temperature. This could
be related to the occurrence of a PMP1f-induced "spacer" effect
counteracting the electrical effect on 

, and attenuating the charge-induced increase of the
quadrupolar splitting. We propose that this "spacer" effect is associated with a perturbation of the POPC headgroups in contact with the POPS/peptide complexes. The
fact that the "spacer" effect is barely observed at 10°C could simply indicate that the later complexes laterally segregate at low
temperature, excluding the PC molecules from the PMP1f-POPS environment
and allowing intermolecular interactions between PC headgroups.
Conversely, on reheating the sample, the PMP1f-POPS aggregates would
partially dissociate and surround some PC molecules, hindering
intermolecular interactions between PC headgroups. At 37°C, the slope
of the 

versus R plot is null, which means that the
"spacer" effect fully offsets the electrostatic response.
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CONCLUSION |
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The data obtained with chain-deuterated POPS indicate that the PMP1f-POPS interactions are strong enough to induce the formation of a molecular complex. The choline response obtained in the presence of PMP1f could indicate that they also lead to a lateral segregation of these complexes in the bilayer.
Our previous 1H-NMR study of PMP1f (Beswick et
al., 1998a
, b
) and the present 2H-NMR results
obtained with the PMP1f-POPC/POPS system, as well as the small size of
PMP1, provide a suitable model of protein interactions with lipid
bilayers. We thus have undertaken a molecular dynamics simulation on a
hydrated PC/PS bilayer including PMP1. The result of this simulation
should provide a detailed description of the interaction network that
takes place between PMP1 and phosphatidylserines. In order to complete
this theoretical approach, 1H and
2H-NMR studies of PMP1f mutants are also underway.
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ACKNOWLEDGMENTS |
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We thank C. Navarre and A. Goffeau (Unité de Biochimie Physiologique, Université Catholique de Louvain, Belgium) for focusing our attention on PMP proteins and for their participation in our previous works.
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FOOTNOTES |
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Received for publication 20 January 2000 and in final form 21 June 2000.
Address reprint requests to Dr. Michel Roux, Département de Biologie Cellulaire et Moléculaire, Section de Biophysique des Protéines et des Membranes, CEA and URA CNRS 2096, Centre d'Etudes de Saclay, 91191 Gif sur Yvette Cedex, France. Tel.: 33-1-69-08-42-40; Fax: 33-1-69-08-81-39; E-mail: roux{at}dsvidf.cea.fr.
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REFERENCES |
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Biophys J, November 2000, p. 2624-2631, Vol. 79, No. 5
© 2000 by the Biophysical Society 0006-3495/00/11/2624/08 $2.00
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