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Biophys J, March 2002, p. 1358-1372, Vol. 82, No. 3

Lateral Diffusion Coefficients in Membranes Measured by Resonance Energy Transfer and a New Algorithm for Diffusion in Two Dimensions

Jósef Kusba,* Li Li,dagger Ignacy Gryczynski,dagger Grzegorz Piszczek,dagger Michael Johnson,dagger and Joseph R. Lakowiczdagger

 *Technical University of Gdansk, Faculty of Applied Physics and Mathematics, Gdansk, Poland, and  dagger University of Maryland School of Medicine, Center for Fluorescence Spectroscopy, Department of Biochemistry and Molecular Biology, Baltimore, Maryland 21201 USA


    ABSTRACT
TOP
ABSTRACT
INTRODUCTION
THEORY
MATERIALS AND METHODS
RESULTS
DISCUSSION
APPENDIX
REFERENCES

We describe measurements of lateral diffusion in membranes using resonance energy transfer. The donor was a rhenium (Re) metal-ligand complex lipid, which displays a donor decay time near 3 µs. The long donor lifetime resulted in an ability to measure lateral diffusion coefficient below 10-8 cm2/s. The donor decay data were analyzed using a new numerical algorithm for calculation of resonance energy transfer for donors and acceptors randomly distributed in two dimensions. An analytical solution to the diffusion equation in two dimensions is not known, so the equation was solved by the relaxation method in Laplace space. This algorithm allows the donor decay in the absence of energy transfer to be multiexponential. The simulations show that mutual lateral diffusion coefficients of the donor and acceptor on the order of 10-8 cm2/s are readily recovered from the frequency-domain data with donor decay times on the microsecond timescale. Importantly, the lateral diffusion coefficients and acceptor concentrations can be recovered independently despite correlation between these parameters. This algorithm was tested and verified using the donor decays of a long lifetime rhenium lipid donor and a Texas red-lipid acceptor. Lateral diffusion coefficients ranged from 4.4 × 10-9 cm2/s in 1,2-dimyristoyl-sn-glycero-3-[phospho-rac-(1-glycerol)] (DMPG) at 10°C to 1.7 × 10-7 cm2/s in 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) at 35°C. These results demonstrated the possibility of direct measurements of lateral diffusion coefficients using microsecond decay time luminophores.


    INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
THEORY
MATERIALS AND METHODS
RESULTS
DISCUSSION
APPENDIX
REFERENCES

Fluorescence spectroscopy has been widely used to measure the dynamic properties of cell membranes (Stubbs et al., 1992). Typically, the anisotropy decays of nanosecond decay time fluorophores are used to study the order and dynamics of the acyl side chain regions. Hence the anisotropy decays of nanosecond decay time membrane probes reveals membrane dynamics over distances of 2 to 10 Å. However, such studies provide no information on the lateral motions of lipids and proteins in biological membranes (Tocanne et al., 1994; Zhang et al., 1993; Walther et al., 1996; Edidin et al., 1994; Simson et al., 1995). Fluorescence recovery after photobleaching (FRAP) is presently the most commonly used method to measure lateral diffusion (Perisamy and Verkman, 1998; Lippincott-Schwartz et al., 1999; Valez and Axelrod, 1988). When using FRAP one measures the rates at which fluorophores repopulate a region of the membranes, which was photobleached by an intense laser light pulse. Hence FRAP measures lateral motions of lipids on proteins over large macroscopic distances ranging from 5000 to 30,000 Å. Such studies have shown that lipids or proteins do diffuse in membranes and that the rates of diffusion depend on the membrane lipid composition and the presence of membrane-bound proteins. Additionally, such measurements have revealed the presence of mobile and immobile fractions, the latter probably being proteins whose motions are restricted by the cytoskeleton matrix.

An alternative approach is to use resonance energy transfer (RET) to study the membranes (Fung and Streyer, 1978; Wolber and Hudson, 1979; Dewey and Hammes, 1986; Hauser et al., 1976; Estep and Thompson, 1979), which can be expected to provide information over distances comparable with the Forster distance (R0), which are typically in the range of 25 to 60 Å. Such studies provide information on the spatial distribution and/or distance between donor (D) and acceptors (A). However, it is difficult to use RET to measure lateral diffusion coefficients. This is because there is little diffusive motion during decay times of the excited state, which are typically near 10 ns. The available expression for RET in two dimensions assumes a static distribution of donors and acceptors (Fung and Streyer, 1978; Wolber and Hudson, 1979; Dewey and Hammes, 1986; Hauser et al., 1976). To the best of our knowledge analytical expressions for RET in two dimensions with diffusion have not been reported.

In the present report we describe the use of RET to perform direct measurement of lateral diffusion in membranes. Such measurements are possible using luminescent metal-ligand complexes with microsecond decay times, many of which have been developed in this laboratory over the past several years (Terpetschnig et al., 1995, 1997; Szmacinski et al., 1996; Castellano et al., 1998; Guo et al., 1997). Because of the long decay times one can predict the lipids will undergo significant lateral motions during the excited state lifetime. It is well known that donor-to-acceptor motions in three dimensions during the donor decay time result in an increased efficiency of energy transfer (Steinberg and Katchalski, 1968; Stryer et al., 1982; Thomas et al. 1978). The availability of metal-ligand complex (MLC)-labeled lipids with microsecond decay times thus suggests the possibility of measuring lateral diffusion coefficients in membranes for the time-resolved resonance energy transfer (RET) data. However, an analytical solution for the diffusion equations in two dimensions is not known. Hence, we developed a numerical algorithm that predicts the intensity decays of the donors in the presence of acceptors randomly distributed in two dimensions with mutual donor-to-acceptor diffusion. We show by simulations and experimental data that lateral diffusion coefficients can be readily recovered from the intensity decay of long-lived donors. These results demonstrate the possibility of measuring membrane dynamics on the heretofor inaccessible microsecond timescale over distances ranging from 20 to 100 Å.


    THEORY
TOP
ABSTRACT
INTRODUCTION
THEORY
MATERIALS AND METHODS
RESULTS
DISCUSSION
APPENDIX
REFERENCES

We now describe our method for simulations and analysis the time-resolved donor decays in the presence of two-dimensional diffusion of the donors and acceptors. Information about the static distribution and mutual donor-to-acceptor diffusion coefficient D is contained in the intensity decay of the donor. We assume that the donor emission can be observed without contributions from autofluorescence of the sample or from the fluorescent acceptor. We found that the intensity decay of the MLC donor in membranes was more complex than a single exponential even in the absence of acceptors. Hence, it was necessary to use expressions that account for a multiexponential decay law in the absence of energy transfer. The donor decays, in the absence of acceptors, were analyzed using the multiexponential model
I<SUB><UP>D</UP></SUB>(t)=I<SUP><UP>0</UP></SUP><SUB><UP>D</UP></SUB> <LIM><OP>∑</OP><LL><UP>i</UP></LL></LIM> &agr;<SUB><UP>Di</UP></SUB><UP> exp</UP>(<UP>−</UP>t/&tgr;<SUB><UP>Di</UP></SUB>), (1)
in which I<UP><SUB>D</SUB><SUP>0</SUP></UP> is the intensity of the donor emission at time t = 0, and alpha Di are the relative amplitudes (at t = 0) of the components characterized by the decay times tau Di in the absence of acceptors. The factors alpha Di are normalized so that Sigma ialpha Di = 1. Eq. 1 may be rewritten in the form
I<SUB><UP>D</UP></SUB>(t)=<LIM><OP>∑</OP><LL><UP>i</UP></LL></LIM> I<SUB><UP>Di</UP></SUB>(t) (2)
in which
I<SUB><UP>Di</UP></SUB>(t)=I<SUP><UP>0</UP></SUP><SUB><UP>D</UP></SUB><UP>&agr;<SUB>Di</SUB> exp</UP>(<UP>−</UP>t/&tgr;<SUB><UP>Di</UP></SUB>) (3)
are the intensity decays of the components with each decay time.

Because the decay of the donor is multi exponential even in the absence of acceptor, it is necessary to consider how energy transfer affects each component in the decay. We assume that the components behave as if they each have the same Förster distance (R0) for transfer. Thus for the ith component of molecules containing a donor and an acceptor separated by a distance r, the transfer rate is described by
k<SUB><UP>DAi</UP></SUB>(r)=<FR><NU>1</NU><DE>&tgr;<SUB><UP>Di</UP></SUB></DE></FR> <FENCE><FR><NU>R<SUB>0</SUB></NU><DE>r</DE></FR></FENCE><SUP>6</SUP> (4)
This assumption is frequently used when using RET to measure distance distributions and has not been found to introduce any difficulties (Cheung, 1991). Using this assumption, the donor decay in the presence of acceptors (Eq. 3) can be expressed as
I<SUB><UP>DAi</UP></SUB>(t)=I<SUP><UP>0</UP></SUP><SUB><UP>D</UP></SUB>&agr;<SUB><UP>i</UP></SUB><UP> exp</UP>[<UP>−</UP>t/&tgr;<SUB><UP>Di</UP></SUB>−C<SUP><UP>0</UP></SUP><SUB><UP>A</UP></SUB>W<SUB><UP>i</UP></SUB>(t)] (5)
in which C<UP><SUB>A</SUB><SUP>0</SUP></UP> is the concentration of acceptor and Wi(t) is given by
W<SUB><UP>i</UP></SUB>(t)=<LIM><OP>∫</OP><LL>0</LL><UL><UP>t</UP></UL></LIM> k<SUB><UP>i</UP></SUB>(t′)dt′. (6)
We assume here that energy transfer and/or diffusion modify only the t > 0 part of the donor fluorescence decay curve and does not change the time-zero characteristics of the decay, i.e., I<UP><SUB>D</SUB><SUP>0</SUP></UP> and alpha i. The form of Eq. 4 does not depend on the dimensionality on the system. In contrast, the form of the second order donor-acceptor transfer rates, ki(t) are dimensionality dependent. Within a two-dimensional model for energy transfer with diffusion, the transfer rates ki(t) may be calculated as
k<SUB><UP>i</UP></SUB>(t)=2&pgr; <LIM><OP>∫</OP><LL><UP>r<SUB>min</SUB></UP></LL><UL><UP>∞</UP></UL></LIM> rk<SUB><UP>DAi</UP></SUB>(r)y<SUB><UP>i</UP></SUB>(r, t)dr (7)
in which rmin denotes the distance of donor-acceptor closest approach and yi(r, t) satisfy the diffusion equation
<FR><NU>∂y<SUB><UP>i</UP></SUB>(r, t)</NU><DE>∂t</DE></FR>=D∇<SUP>2</SUP>y<SUB><UP>i</UP></SUB>(r, t)−k<SUB><UP>DAi</UP></SUB>(r)y<SUB><UP>i</UP></SUB>(r, t) (8)
with parameter D being a sum of the diffusion coefficients of the donor and acceptor, respectively (D = DD + DA). Functions yi(r, t) have a meaning of ratios of the mean concentration CAi(r, t) of acceptor molecules at the distance r from the excited donor of the ith type to the bulk concentration of the acceptor C<UP><SUB>A</SUB><SUP>0</SUP></UP>. The initial condition of Eq. 8 is
y<SUB><UP>i</UP></SUB>(r, t=0)=1, (9)
which means the donors and acceptors are randomly distributed at t = 0. The inner and outer boundary conditions are
<FENCE><FR><NU>∂y<SUB><UP>i</UP></SUB>(r, t)</NU><DE>∂r</DE></FR></FENCE><SUB><UP>r=r<SUB>min</SUB></UP></SUB>=0 (10)

y<SUB><UP>i</UP></SUB>(r→∞, t)=1. (11)
in which rmin is the distance of closest approach for the donor and acceptor. Eq. 11 can be understood as a constant acceptor concentration at long distances from the donor. Eq. 10 is known as the reflection or specular boundary conditions, which assure that donor-acceptor collisions at r = rmin do not influence the RET process except as due to the dependence on distance according to Eqs. 4 and 8. That is, the RET process is the only deactivation channel due to the acceptor.

An analytical solution of Eq. 8 is not known, so the numerical methods were applied. To minimize the time of calculation of the fluorescence decays with Eq. 5 we used an algorithm described previously (Kusba and Lakowicz, 1994). This algorithm allowed for variable mesh sizes on the time axis and for exponential approximation of the decay in the particular time intervals. To evaluate quantities Wi(t) in Eq. 5, we applied a method similar to that described in (Kusba, 1987). Each of the decays from Eq. 5 was evaluated for approximately n = 50 time points, tik, (k = 1..n), inhomogenously distributed on the time axis. The intensity decays were calculated in Laplace space and inverted using the Stedfest procedure (Lakowicz and Gryczynski, 1991). More detail concerning the fluorescence decay evaluation can be found in the Appendix.

The calculated donor intensity decays were used to predict the phase and modulation values (Stehfest, 1970). For a given set of parameter values, D, tau , R0, and rmin, the donor decays IDi(t) obtained by the numerical procedure were used for calculation of the quantities
N<SUB>&ohgr;</SUB>=<FR><NU><LIM><OP>∑</OP><LL><UP>i</UP></LL></LIM> <LIM><OP>∫</OP><LL>0</LL><UL>∞</UL></LIM> I<SUB><UP>Di</UP></SUB>(t)<UP>sin</UP>(&ohgr;t)dt</NU><DE><LIM><OP>∑</OP><LL><UP>i</UP></LL></LIM> <LIM><OP>∫</OP><LL>0</LL><UL>∞</UL></LIM> I<SUB><UP>Di</UP></SUB>(t)dt</DE></FR> (12)
and
D<SUB>&ohgr;</SUB>=<FR><NU><LIM><OP>∑</OP><LL><UP>i</UP></LL></LIM> <LIM><OP>∫</OP><LL>0</LL><UL>∞</UL></LIM> I<SUB><UP>Di</UP></SUB>(t)<UP>cos</UP>(&ohgr;t)dt</NU><DE><LIM><OP>∑</OP><LL><UP>i</UP></LL></LIM> <LIM><OP>∫</OP><LL>0</LL><UL>∞</UL></LIM> I<SUB><UP>Di</UP></SUB>(t)dt</DE></FR> (13)
at given modulation frequency omega . The values of Nomega and Domega are needed for calculation (c) of the phase angle (phiomega ) and modulation (momega ) values, which are given by
ϕ<SUB><UP>c&ohgr;</UP></SUB>=<UP>arctan</UP>(N<SUB>&ohgr;</SUB>/D<SUB>&ohgr;</SUB>) (14)

m<SUB><UP>c&ohgr;</UP></SUB>=(N<SUP>2</SUP><SUB>&ohgr;</SUB>+D<SUP>2</SUP><SUB>&ohgr;</SUB>)<SUP>1/2</SUP>. (15)
The calculated phase (phicomega ) and modulation (mcomega ) values are compared with the experimental data to determine the diffusion (D) parameter by the method of nonlinear least squares (Johnson, 1983; Johnson and Frasier, 1985). The goodness-of-fit is characterized by
&khgr;<SUP><UP>2</UP></SUP><SUB><UP>R</UP></SUB>=<FR><NU>1</NU><DE>v</DE></FR> <LIM><OP>∑</OP><LL>&ohgr;</LL></LIM> <FENCE><FR><NU>ϕ<SUB>&ohgr;</SUB>−ϕ<SUB><UP>c&ohgr;</UP></SUB></NU><DE>&dgr;ϕ</DE></FR></FENCE><SUP>2</SUP>+<FR><NU>1</NU><DE>v</DE></FR> <LIM><OP>∑</OP><LL>&ohgr;</LL></LIM> <FENCE><FR><NU>m<SUB>&ohgr;</SUB>−m<SUB><UP>c&ohgr;</UP></SUB></NU><DE>&dgr;m</DE></FR></FENCE><SUP>2</SUP> (16)
in which v is a number of degrees of freedom, and delta phi = 0.4° and delta m = 0.01 are the experimental uncertainties in the measured phase angles (phiomega ) and modulation (momega ), respectively, assumed for both the simulated and measured values. In the case of global analysis the sum in Eq. 16 extends over both the modulation frequencies (omega ) and over the multiple data sets used in analysis. Typically these data are donor decays measured with different acceptor concentrations in the membranes or data with a single acceptor concentration but several temperatures.

The frequency-domain data were also analyzed in terms of multiexponential model Eq. 1. The fractional intensity of each component to the steady-state intensity is given by
f<SUB><UP>Di</UP></SUB>=<FR><NU>&agr;<SUB><UP>Di</UP></SUB><UP>&tgr;<SUB>Di</SUB></UP></NU><DE><LIM><OP>∑</OP><LL><UP>j</UP></LL></LIM> &agr;<SUB><UP>Dj</UP></SUB>&tgr;<SUB><UP>Dj</UP></SUB></DE></FR>. (17)
The mean lifetime is given by
<OVL>&tgr;<SUB><UP>D</UP></SUB></OVL>=<LIM><OP>∑</OP><LL><UP>i</UP></LL></LIM> f<SUB><UP>Di</UP></SUB>&tgr;<SUB><UP>Di</UP></SUB> (18)
The confidence intervals on a parameter were determined from the dependence of chi <UP><SUB>R</SUB><SUP>2</SUP></UP> on this parameter when it was held constant at a value different from the optimal value. The other parameters were then allowed to vary to minimize chi <UP><SUB>R</SUB><SUP>2</SUP></UP> with the constant parameter held at its nonoptimal value, yielding chi <UP><SUB>R</SUB><SUP>2</SUP></UP> (par). This procedure yields the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surface on the contour plot for the parameter with the minimum value chi <UP><SUB>R</SUB><SUP>2</SUP></UP> (min) at the optimal parameter value. The contour plots are usually presented as the ratio
&khgr;<SUP><UP>2</UP></SUP><SUB><UP>RN</UP></SUB>=<FR><NU>&khgr;<SUP><UP>2</UP></SUP><SUB><UP>R</UP></SUB> (<UP>par</UP>)</NU><DE>&khgr;<SUP><UP>2</UP></SUP><SUB><UP>R</UP></SUB> (<UP>min</UP>)</DE></FR> (19)
The ranges of parameter values consistent with the data were taken as the intersection of the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surface with the Fchi value for a given probability P, which we took as P = 0.32,
F<SUB>&khgr;</SUB>=<FR><NU>&khgr;<SUP><UP>2</UP></SUP><SUB><UP>R</UP></SUB> (<UP>par</UP>)</NU><DE>&khgr;<SUP><UP>2</UP></SUP><SUB><UP>R</UP></SUB> (<UP>min</UP>)</DE></FR>=1+<FR><NU>p</NU><DE>v</DE></FR> F(p, v, P) (20)
In this expression, F(p, v, P) is the F-statistic with p parameters and v degrees of freedom with a probability of P. In our experiments a single frequency domain data file contains about 40 measurements, 20 phase angles, and 20 modulation values. A global analysis is typically performed with five data files or 200 measurements. For 40 degrees of freedom and one variable parameters this value is Fchi  sime  1.03. For 200 degrees of freedom or five variable parameters Fchi  sime  1.01.


    MATERIALS AND METHODS
TOP
ABSTRACT
INTRODUCTION
THEORY
MATERIALS AND METHODS
RESULTS
DISCUSSION
APPENDIX
REFERENCES

The syntheses of [Re(4,7-Me2phen)(CO)3(4-COOHPy)](PF6), where 4,7-Me2phen is 4,7-dimethyl-1,10-phenanthroline and 4-COOHPy is isonicotinic acid, and its phospholipid analogue (Re-PE) serving as the energy donor were described in the previous reports (Li et al., 1999a, b). The energy acceptor, N-(Texas Red sulfonyl)-1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine (Tr-PE), was obtained from Molecular Probes (Eugene, OR) and used as received. These chemical structures are shown in Fig. 1. The spectral properties of the donor and acceptor resulted in R0 values near 35 Å, depending on the temperature. Under our experimental conditions the Förster distances (R0) from Re-PE to Tr-PE energy transfer ranged from 28 to 37 Å. 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) and cholesterol were from Sigma Chemical Co (St. Louis, MO) and 1,2-dimyristoyl-sn-glycero-3-[phospho-rac-(1-glycerol)] (DMPG) was obtained from Avanti Polar Lipids (Alabaster, AL). All solvents and reagents were obtained from Aldrich and used without further purification. Water was deionized with a Milli-Q purification system.



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FIGURE 1   Molecular structure of the energy donor (Re-PE) and acceptor (Tr-PE). The lower panel shows the donor emission and acceptor absorption spectra. The shaded area in the overlap intergral corresponds to a R0 value near 35 Å.

Preparation of model membranes

Lipid vesicles were prepared by the usual procedure of mixing and sonication. Appropriate amounts of the donor and acceptor phospholipids, DMPG, DOPC, and/or cholesterol in CHCl3 were taken from stock solutions, and the solvent was removed by a stream of argon. The molar ratio of Re-PE to Tr-PE was kept constant at 4.5:1 whereas the amount of unlabeled phospholipid was varied to obtain molar ratios of Tr-PE to DOPC ranging from 0 to 0.02. Vesicles were prepared by sonication under an atmosphere of argon in 0.1 M sodium phosphate buffer, pH 7.2, at final lipid concentrations ranging from 0.5 to 7.0 mg/ml. Using this preparation procedure, the vesicle diameter is between 200 and 250 Å as determined through anisotropy measurements using the long lifetime ruthenium complex lipid (Li et al., 1997). For all simulations and analyses we assumed the minimum donor-to-acceptor distance was rm = 7 or 8 Å as indicated in the text. The area occupied per lipid molecules was assumed to be 74 Å2/lipid molecules for DOPC at all temperatures, 48, 55, and 62 Å/lipid molecule for DMPG at 10.23 and 35 ÅC, respectively, and 55 Å/molecule for cholesterol at all temperatures (Marra, 1986). The Förster distance (R0) was calculated using the known equations and the uncorrected emission spectra of the Re-PE labeled vesicles. Quantum yields of Re-PE were measured relative to 3-aminofluoranthene in dimethyl sulfoxide with an assumed quantum yield of 0.32 (Gryczynski et al., 1997). For calculating the overlap intergral we used the absorption spectrum of Tr-PE with a maximum extinction coefficient of 109,000 M-1 cm-1 at 583 nm.

Instrumentation

Absorption and emission spectra were recorded on a HP 8453 diode array spectrophotometer and a SLM AB2 fluorimeter under magic angle polarization conditions, respectively. The frequency-domain fluorimeter (ISS, Koala) used 325-nm excitation from a HeCd laser (Liconix, 20 mW). This laser was passed through a Pockels cell operated from an ISS low frequency amplifier (K2.LF), which provided modulated light from 3 kHz to 2.5 MHz. Two PTS frequency synthesizers (PTS-500) were used to modulate the Pockels cell and detection system. For fluorescence intensity measurements, a 500-nm cutoff filter (500FH90-50S) and two short-wavelength pass filters (550FL07-50S) from Andover (Salem, NH) were used to isolate the donor emission from that of the acceptor.


    RESULTS
TOP
ABSTRACT
INTRODUCTION
THEORY
MATERIALS AND METHODS
RESULTS
DISCUSSION
APPENDIX
REFERENCES

Effect of two-dimensional diffusion on the transfer efficiency

Prior to considering the intensity decays of the donors it is informative to examine the effect of two-dimensional diffusion on the overall transfer efficiency. The transfer efficiency (E) was calculated from the integral of the time-dependent donor decay in the absence (ID(t)) and presence (IDA(t)) of acceptors using
E=1−<FR><NU><LIM><OP>∫</OP><LL><UP>D</UP></LL><UL><UP>∞</UP></UL></LIM> I<SUB><UP>DA</UP></SUB>(t)dt</NU><DE><LIM><OP>∫</OP><LL><UP>D</UP></LL><UL><UP>∞</UP></UL></LIM> I<SUB><UP>D</UP></SUB>(t)dt</DE></FR> (21)
in which the superscript A indicates the presence of acceptor.

Fig. 2 shows the transfer efficiencies for various assumed donor decay times and mutual diffusive coefficients. The acceptor density was assumed to be 5 × 10-3 acceptors/lipid. For typical donor decay times near 10 ns even rapid lateral diffusion at 10-6 cm2/s will not effect the transfer efficiency. As the donor decay time increases the transfer efficiency increases. For very long decay times and/or rapid lateral diffusion the transfer efficiency approaches a limiting value of 91.4% (Fig. 2, - - -). This is the rapid diffusion limit at which the transfer efficiency is determined by the distance of closest approach between the donor and acceptor. For spherical donors and acceptors in two dimensions the diffusion limited value of the rate of energy transfer kT is given by
k<SUB><UP>T</UP></SUB>=<FR><NU>1</NU><DE>&tgr;<SUB><UP>D</UP></SUB></DE></FR> <LIM><OP>∫</OP><LL><UP>r<SUB>min</SUB></UP></LL><UL><UP>∞</UP></UL></LIM> <FENCE><FR><NU>r</NU><DE>R<SUB>0</SUB></DE></FR></FENCE><SUP>6</SUP>&agr;<SUB><UP>A</UP></SUB>2&pgr;rdr=<FR><NU>&pgr;&sfgr;<SUB><UP>A</UP></SUB>R<SUP>6</SUP><SUB>0</SUB></NU><DE>2r<SUP><UP>4</UP></SUP><SUB><UP>min</UP></SUB></DE></FR> (22)
in which sigma A = 6.7 × 10-5 molecules/Å2 is the density of acceptors, rmin = 7 Å is the distance of closest approach, R0 = 25 Å, and tau D = 3 µs is the donor decay time (Thomas and Stryer, 1982; Stryer et al., 1982; Lakowicz, 1999). Using these values one can calculate the diffusion limited value of kT to be 3.55 × 106 s-1 = 10.65/tau D. The diffusion limited transfer rate is ~10-fold larger than the donor-donor decay time. This value of kT can be used to calculate the transfer efficiency of 91.4% using
E=<FR><NU>k<SUB><UP>T</UP></SUB></NU><DE>k<SUB><UP>T</UP></SUB>+&tgr;<SUP><UP>−1</UP></SUP><SUB><UP>D</UP></SUB></DE></FR>. (23)
Additional information is available if the donor decay times are intermediate between the static and rapid diffusion limit, where the transfer efficiency depends on the mutual donor-to-acceptor diffusion coefficient (Fig. 2). In particular, for decay times from 1 to 100 µs, lateral diffusion coefficients from 10-9 to 10-6 cm2/s result in increased transfer efficiency. These results suggest that the time-dependent donor decays can be used to measure the rate of donor-to-acceptor diffusion in membranes.



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FIGURE 2   Effect of the lateral diffusion coefficient and the donor decay time on the steady-state RET transfer efficiency. For these simulations we assumed rmin = 7 Å, R0 = 25 Å, 75 Å2 per lipid molecule and 5 × 10-3 acceptor per lipid molecule.

Simulated time-dependent donor decay with RET and two-dimensional diffusion

We used our numerical algorithm for RET in membranes to simulate the frequency-domain intensity decays. The frequency responses were simulated using assumed values of R0, lipid area, and acceptor density. Simulated data for unquenched donor decay times (tau D) of 3 and 30 µs are shown in Fig. 3. The solid and dashed lines show the donor decays in the presence and absence of diffusion, respectively. These frequency responses show that faster diffusion shifts the response to higher frequencies and shorter mean donor decay times. For the same diffusion coefficients longer donor decay times result in larger shifts, as expected with the additional time for D-to-A diffusion. Analytical expressions are available for RET in two dimensions without diffusion (Wolber and Hudson, 1979; Dewey and Hammes, 1986; Hauser et al., 1976; Estep and Thompson, 1979). We confirmed that the frequency responses calculated using our algorithm without diffusion (- - -) were equivalent to the known analytical expressions.



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FIGURE 3   Simulated frequency-domain intensity decays for donors and acceptors randomly distributed in two dimensions. For the simulation, R0 = 25 Å rmin = 7 Å, 75 Å2/lipid molecule, and 5 × 10-3 acceptors/lipid molecules. For D = 5 × 10-8 cm2/s the solid lines show the simulated phase and modulation values. The dashed lines show the expected donor decays without lateral diffusion, and the dotted lines show the donor decays in the absence of acceptors. The shaded area shows the contribution of lateral diffusion to increasing the rate of energy transfer.

In an experimental analysis we wish to calculate the diffusion coefficient from the time-resolved data. The ability to recover D from the frequency-domain data is not obvious because increased diffusion coefficients and increased acceptor densities both result in higher amounts of energy transfer. Stated alternatively, one can expect the diffusion coefficient and acceptor density to be correlated parameters (Johnson, 1983). Hence we analyzed the frequency-domain data simulated with various acceptor densities and a mutual diffusion coefficient of 10-7 cm2/s (Table 1). One notices that the correct values of both D and the A density were recovered over a range of acceptor densities. The uncertainty in the recovered parameter is reasonably small. These values were obtained with both the diffusion coefficients and acceptor concentrations as variable parameters. Because higher diffusion coefficients and higher acceptor concentrations both result in an increase in the transfer efficiency these parameters are expected to be correlated. More specifically, an increase in the diffusion coefficient can be compensated for by a decrease in the acceptor concentration and vice versa. Correlation between parameters results in wider confidence intervals than for uncorrelated parameters (Johnson, 1983; Johnson and Frasier, 1985). Even with consideration of correlation the confidence intervals are small, ~10% of the assumed values. The ability to recover both the diffusion coefficients and the acceptor density can be understood as the effects of diffusion on the form of the intensity decay. Energy transfer to a static distribution of acceptors, in 1, 2 or 3 dimensions, results in nonexponential decays (Thomas and Stryer, 1982). As the diffusion coefficient increases the donor decays become shorter but more like a single exponential (Lakowicz, 1999). It is this dependence on the form of the intensity decay on the diffusion coefficient, which allows recovery of both D and A density from the time-resolved data.


                              
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TABLE 1   Energy transfer and diffusion analysis* of simulated data

We used simulations to estimate the lower limit of the diffusion coefficient, which we expect to be detectable with a 3-µs decay time donor (Fig. 4). The shaded areas indicate the contribution of diffusion to increasing the donor decay rate. These simulations show that diffusion coefficient as low as 5 × 10-9 cm2/s still visually alter the donor decays. We performed additional simulations to more quantitatively predict the lower limit of the diffusion coefficient detectable with a 3-µs decay time donor. This was accomplished by simulating data for assumed diffusion coefficients and acceptor concentrations. The simulated data were then analyzed to recover the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> values with the diffusion coefficient and acceptor density as variable parameters (chi <UP><SUB>R</SUB><SUP>2</SUP></UP>) or with the diffusion coefficient set to zero chi <UP><SUB>R</SUB><SUP>2</SUP></UP>(D = 0). This difference between these fits reflects the possibility of compensating for a higher diffusion coefficient with a lower acceptor concentration. In these analyses the acceptor concentrations were either held fixed at the assumed value (Fig. 5, top) or taken as a variable parameter (Fig. 5, bottom). When the acceptor concentration is fixed the relative elevation of the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> ratio indicates the overall contribution of acceptor presence and diffusion on the donor decay. In this case one sees that diffusion coefficients less than 10-9 cm2/s are detectable (Fig. 5, top). If the acceptor concentration is a variable parameter the lowest detectable diffusion coefficient is again near 10-9 cm2/s (Fig. 5, bottom). With the acceptor concentration as a variable parameter the increase in chi <UP><SUB>R</SUB><SUP>2</SUP></UP> are ~10-fold less than with a known acceptor concentration. Nonetheless, the relative chi <UP><SUB>R</SUB><SUP>2</SUP></UP> values are significantly elevated, which reflect the effect of diffusion on changing the shape of the frequency response as well as its position on the frequency axis. In both cases somewhat lower diffusion coefficients are detectable at higher acceptor concentrations.



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FIGURE 4   Simulated donor intensity decay for a donor decay time tau 0 = 3 µs and various lateral diffusion coefficients. For these simulations R0 = 25 Å, rmin = 7 Å, 75 Å2 per lipid molecule, and 5 × 10-3 acceptors per lipid molecule.



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FIGURE 5   Relative chi <UP><SUB>R</SUB><SUP>2</SUP></UP> values for data simulated with D-to-A diffusion and an acceptor-to-lipid ratio of 0.02. The simulated data were analyzed with and without D-to-A diffusion. The simulated data were analyzed with the acceptor concentration fixed at the known value (top) or as a floating parameter (bottom). The assumed values are tau D = 3 µs, R0 = 25 Å, rmin = 7 Å, and 75 Å2 per lipid molecule. For D = 10-9 cm2/s the ratio of chi <UP><SUB>R</SUB><SUP>2</SUP></UP> (D = 0)/chi <UP><SUB><IT>R</IT></SUB><SUP><IT>2</IT></SUP></UP> with the acceptor concentration fixed at 0.02 is 8.8 (top). With the acceptor concentration floating the ratio is 3.4.

Experimental measurements of RET in membranes

Prior to measurement of RET in membranes we examined the intensity decays of Re-PE in lipid bilayers in the absence of acceptor (Fig. 6 and Table 2). The Re-PE intensity decays were found to be described by a double or triple exponential decay with mean decay times ranging from 2.2 to 0.5 µs. The longest mean decay times were observed in the absence of cholesterol at the lower temperature. These intensity decays in Table 2 were used as fixed values when analyzing the donor decays in the presence of the RET acceptors.



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FIGURE 6   Intensity decay of Re-PS in DOPC in the absence of acceptor.


                              
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TABLE 2   Multiexponential analysis of the Re-PE donor intensity decays in lipid vesicles

We next examined the donor decays in the presence of the Tr-PE acceptor. These measurements were performed in unsaturated DOPC vesicles (Fig. 7), saturated DMPG vesicles (Fig. 8) and in DMPG vesicles containing cholesterol (Fig. 9). In all cases the donor frequency responses were adequately fit to our model with the diffusion coefficient and the acceptor density as floating parameters (Table 3). The contributions of diffusion-enhanced RET to the donor decays can be seen by comparing the measured response with that calculated with D = 0 (- - -). In DOPC mutual donor-to-acceptor diffusion makes a substantial contribution towards increasing the donor decay rate at all temperatures from 10 to 35°C (Fig. 7). In the case of DMPG the effect of diffusion is minimal below its transition temperature of 23°C, and the effect of diffusion is evident at 35°C (Fig. 8). In the case of DMPG vesicles, which also contain cholesterol the contribution of diffusion is modest but visible from 10 to 35°C.



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FIGURE 7   Re-PE donor decays in DOPC in the presence of a 0.02 mol fraction of Tr-PE acceptor. The solid line shows the best fit with the diffusion coefficient and acceptor density as variable parameters. The dash line shows the predictive response at the known acceptor density and the diffusion coefficient set equal to zero.



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FIGURE 8   Re-PE donor decays in DMPG in the presence of a 0.02 mol fraction of Tr-PE acceptor. The DMPG/cholesterol ratio is 4:1. See Fig. 7.



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FIGURE 9   Re-PE donor decays in DMPG/cholesterol (mol/mol) in the presence of a 0.02 mol fraction of Tr-PE acceptor. See Fig. 7.


                              
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TABLE 3   Analysis of the Re-PE donor decays in terms of the mutual D-to-A diffusion coefficient

Fig. 10 summarizes the lateral diffusion coefficients obtained from the RET data. These diffusion coefficients were recovered from the global analysis at three temperatures with the single acceptor concentration in the membrane as a global parameter (Table 3). The largest diffusion coefficients were observed in DOPC bilayers, but the effect of temperature was modest (Fig. 10). Lower diffusion coefficients were observed in DMPG bilayers, but these values were strongly dependent on temperature. The presence of cholesterol in the DMPG bilayers resulted in an intermediate rate of diffusion and in a weaker dependence of the lateral diffusion coefficient on temperature.



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FIGURE 10   Temperature-dependent lateral diffusion coefficient in membranes as observed using the Re-PE and Tr-PE donor-acceptor pair. The diffusion coefficients are from the global analysis at three temperatures and one lipid concentration (Table 3). The error bars represent the confidence intervals obtained from the global analysis at one acceptor concentration and three temperatures (Figs. 11 and 12).

We questioned the uncertainty in the recovered values of the diffusion coefficients. As has been discussed previously, there is no analytically correct method to calculate the uncertainty for parameters recovered from nonlinear least squares analysis (Johnson, 1983; Johnson and Frasier, 1985). However, these uncertainties can be obtained by examination of the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surfaces or contour plots. To construct such a plot one repeats the least squares analysis with a chosen parameter value fixed at a value near to but not at the value yielding the minimum value of chi <UP><SUB>R</SUB><SUP>2</SUP></UP>. The other parameters are allowed to vary to minimize chi <UP><SUB>R</SUB><SUP>2</SUP></UP>. This new chi <UP><SUB>R</SUB><SUP>2</SUP></UP> value represents that found for the fixed parameter value with adjustment of all the other parameters to improve the fit. Because the other parameters can vary this procedure accounts for correlation between the parameters. If the parameters are completely correlated, such as an product of two terms, then changes in one parameter can be completely compensated by a change in the second parameter.

The chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surfaces for RET in the DOPC and DMPG vesicles are shown in Figs. 11 and 12, respectively. For a single temperature the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surfaces for both the diffusion coefficient and acceptor concentrations are well defined. This is an important result, which indicates the diffusion coefficients and acceptor concentrations are not completely correlated. Furthermore, the range of diffusion coefficients and acceptor concentrations consistent with the data are relatively small. For instance, for DOPC at 20°C these values range from 7.7 × 10-8 to 6.1 × 10-8 cm2 and 0.0174 to 0.0192 acceptors per lipid. These results mean that the RET data can be used to recover both values. This possibility will become important in studies of isolated cell membranes or intact cells where it is not always possible to know the probe concentrations.



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FIGURE 11   Resolution of the lateral diffusion coefficient and acceptor concentration in DOPC vesicles as seen for the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surfaces. The values chi <UP><SUB>R</SUB><SUP>2</SUP></UP> are the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> values normalized to the minimum chi <UP><SUB>R</SUB><SUP>2</SUP></UP> value. The solid and darker dashed lines represent the global and nonglobal fits, respectively. The dotted and lighter dashed lines represents the upper value of the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> ratio consistent with the data.



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FIGURE 12   Resolution of the lateral diffusion coefficient and acceptor concentration in DMPG vesicles as seen for the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surfaces. The values of chi <UP><SUB>R</SUB><SUP>2</SUP></UP> are from the global analysis at three temperatures. The solid and darker dashed lines represent the global and nonglobal fits, respectively. The dotted and lighter dashed lines represents the upper value of the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> ratio consistent with the data.

The confidence intervals for the diffusion coefficient and acceptor concentrations can be decreased by a global analysis. In these cases (Figs. 11 and 12) we used the acceptor concentration as a global parameter and allowed the diffusion coefficients to be different at each temperature. The chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surfaces (------) were calculated for changing just one of the three diffusion coefficients or the acceptor concentration. The confidence intervals are smaller than for a single data file mostly because of the lower chi <UP><SUB>R</SUB><SUP>2</SUP></UP> ratio (bullet  bullet  bullet ) needed for significance because of the larger number of data points. In these cases global analysis results in an approximate twofold decrease in the confidence interval. These ranges are shown in Fig. 10. It is interesting to notice that the largest confidence interval was found for DMPG 10°C. This can also be seen from the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surface in Fig. 12. In this lipid the rate of diffusion below the phase transition temperature is slow, even on the microsecond timescale. The small contribution of diffusion to the donor decay results in a larger uncertainty in this slower diffusion coefficient.

It is informative to question whether the data are sensitive to the dimensionality of the system. More specifically, can the data distinguish between donors and acceptors distributed randomly in two or three dimensions. The frequency-domain data were analyzed in terms of a model for diffusing donors and acceptors in three dimensions (Kusba et al., 2000). These analyses result in chi <UP><SUB>R</SUB><SUP>2</SUP></UP> values, which are somewhat elevated over our two-dimensional model (Table 3). However, most of the chi <UP><SUB>R</SUB><SUP>2</SUP></UP> values are reasonably low, and the fits may be regarded as adequate. However, despite these low chi <UP><SUB>R</SUB><SUP>2</SUP></UP> values, the results of the analyses are unacceptable because the answers are not reasonable. These analyses result in acceptor concentrations of 12 to 80 mM and diffusion coefficients ranging from 10-7 to 10-15 cm2/s. The acceptor concentrations are unacceptably large and much higher than the known bulk concentration of the acceptors.

And finally we questioned whether the frequency-domain donor decays, measured for multiple acceptor concentrations, would result in improved resolution of the diffusion coefficients. The donor decays from a range of acceptor concentrations in DOPG vesicles are shown in Fig. 13. The solid lines show the best fit when the acceptor concentrations are variable and there is a single global diffusion coefficient. Except for an acceptor density of 0.005, the data are well matched with a single diffusion coefficient. The chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surfaces shows little if any decrease in the confidence intervals. Hence, there seems to be little advantage to measuring the donor decay at multiple acceptor concentrations.



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FIGURE 13   Frequency-domain intensity decay of Re-PE in DOPC with various concentrations of acceptor. The solid line shows the global analysis using a single diffusion coefficient. From left to right the acceptor densities were 0.025, 0.005, 0.01, 0.015, and 0.02 acceptors per lipid.


    DISCUSSION
TOP
ABSTRACT
INTRODUCTION
THEORY
MATERIALS AND METHODS
RESULTS
DISCUSSION
APPENDIX
REFERENCES

A variety of methods have been used to study lateral diffusion in membranes (Tocanne et al., 1994). The fluorescence methods include quenching, pyrene excimer formation, and RET. Collisional quenching requires close contact between the fluorophores and quencher. As a result most fluorophores in membranes except pyrene are not significantly quenched by reasonable quencher concentrations. Pyrene excimer formation is useful but limited to pyrene and closely related fluorophores, limited by the approximate 200-ns decay time of pyrene in membranes, by the existence of preformed complexes, and by the possibility that the efficiency of excimer formation in different membrane environments. In contrast, RET seems to be preferred over quenching and excimer formation. RET is a through-space interaction that occurs over longer distances and is not affected by the local or intervening environment. Additionally, longer lifetimes and a wide range of spectral properties can be obtained from the extensive literature on metal-ligand complexes (Kalayanasundaram, 1992; Juris et al., 1988; Demas and DeGraff, 1997). Still longer decay times near 0.5 to 3.0 ms can be obtained with lanthanide chelates (Sabbatini and Guardigli, 1993; Li and Selvin, 1995; Martin and Richardson, 1979; Horrocks and Sudnick, 1981; Chen and Selvin, 2000). Given the availability of theory to predict two-dimensional RET with diffusion, we believe that RET with long decay time donors offers considerable promise for studying lateral transport in membranes.

It is reasonable to question whether long lifetime donors can be used in living cells. The use of cells raises two issues: uptake of the labeled lipid and detectability of the emission. Although not easy, cell membranes are frequently labeled with fluorescent fatty acids and lipids (Fulbright et al., 1997; Zucker, 2001; Tocanne et al., 1994; Struck and Pagano, 1980; Tanhuanpää and Somerharju, 1999). Because the metal-ligand complexes display good water solubility, it is probable that labeling with MLC-lipids can be accomplished. However, the MLC probes are less bright than typical organic fluorophores due to their lower extinction coefficient and lower quantum yields. The low extinction coefficients can be circumvented by the use of tandem fluorophores (Tyson and Castellano, 1999a,b; Zhou et al., 2000). These probes contain a high extinction coefficient absorber, which donates the energy to the MLC acceptor with high efficiency. Additionally, it is now known that the effective quantum yield of MLCs can be increased by RET to high quantum yield acceptors (Lakowicz et al., 2001; Maliwal et al., 2001). Hence it appears likely that RET from long lifetime donors can be used with living cells.

In the future one can imagine the use of microsecond and millisecond decay time donors to study slower or more complex motions in membranes. As examples, it is known that membranes form domains of solid and liquid phases (Thompson et al., 1995; Jorgensen et al., 1996; Gheber and Edidin, 1999; Matko and Edidin, 1997). Also, lateral diffusion of lipids is expected to depend on the presence of proteins, which slow lipid diffusion or prevent the motions of proteins (Marguet et al., 1999; Kenworthy and Edidin, 1998). Analysis of the motions in such systems will require further development of the theory and programs to extract the relevant molecular information from the intensity decays.



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FIGURE 14   chi <UP><SUB>R</SUB><SUP>2</SUP></UP> surfaces for the lateral diffusion coefficient and acceptor concentrations in DOPC at 20°C. The bold solid lines and bold dashed lines represent the global fit with a single diffusion coefficient to the data at 5 or 1 acceptor density, respectively. The lighter dotted and dashed lines indicate the confidence intervals for the fits with 5 or 1 acceptor densities, respectively.


    APPENDIX
TOP
ABSTRACT
INTRODUCTION
THEORY
MATERIALS AND METHODS
RESULTS
DISCUSSION
APPENDIX
REFERENCES

At the beginning of calculation of the fluorescence decay IDi(t) according to the algorithm described in Kusba and Lakowicz (1994) one has to evaluate the length of the first step, Delta ti1, on the time axis. In our calculations Delta ti1 was found from the relation
<FR><NU>I<SUB><UP>DAi</UP></SUB>(&Dgr;t<SUB><UP>i1</UP></SUB>)</NU><DE>I<SUP><UP>0</UP></SUP><SUB><UP>D</UP></SUB>&agr;<SUB><UP>Di</UP></SUB></DE></FR>=1−ϵ<SUB>1</SUB>, (A1)
in which varepsilon 1 was a small number of the order of 10-4. Value of varepsilon 1 should be small enough to ensure function yi(r, t) in Eq. 7 to remain practically equal to 1 for all distances r and for times belonging to the interval (0, Delta ti1). Under these conditions Eqs. A1 and 4 to 7 yield
&Dgr;t<SUB><UP>i1</UP></SUB>=<FR><NU>ϵ<SUB>1</SUB>&tgr;<SUB><UP>Di</UP></SUB></NU><DE>1+C<SUP><UP>0</UP></SUP><SUB><UP>A</UP></SUB> <FR><NU>&pgr;R<SUP>6</SUP><SUB>0</SUB></NU><DE>2r<SUP><UP>4</UP></SUP><SUB><UP>min</UP></SUB></DE></FR></DE></FR> (A2)
The algorithm described in Kusba and Lakowicz (1994) allows to find the optimal length of the next step on the time axis based on the properties of the fluorescence decay in the previous time step, so knowing Delta ti1 we were able to calculate Delta ti2, knowing Delta ti2 we were able to calculate Delta ti3, and so on. In fact, this procedure allowed us to find times tik at which the intensity decays of the particular components had to be calculated. To calculate the decay function Eq. 5 for a given time tik one has to solve the diffusion Eq. 8. We applied here the procedure similar to that described in Kusba (1987). Eqs. 6 to 8 and the boundary conditions