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Biophys J, August 2002, p. 920-931, Vol. 83, No. 2

Gating of Heteromeric Retinal Rod Channels by Cyclic AMP: Role of the C-Terminal and Pore Domains

Nelly Bennett, Michèle Ildefonse, Frédérique Pagès, and Michel Ragno

Département de Biologie Moléculaire et Structurale, Laboratoire BMC (UMR CNRS 5090), CEA-Grenoble, Grenoble, France


    ABSTRACT
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

Cyclic nucleotide-gated channels are tetramers composed of homologous alpha  and beta  subunits. C-terminal truncation mutants of the alpha  and beta  subunits of the retinal rod channel were expressed in Xenopus oocytes, and analyzed for cGMP- and cAMP-induced currents (single-channel records and macroscopic currents). When the alpha  subunit truncated downstream of the cGMP-binding site (alpha D608stop) is co-injected with truncated beta  subunits, the heteromeric channels present a drastic increase of cAMP sensitivity. A partial effect is observed with heteromeric alpha R656stop-containing channels, while alpha K665stop-containing channels behave like alpha wt/beta wt. The three truncated alpha  subunits have wild-type activity when expressed alone. Heteromeric channels composed of alpha wt or truncated alpha  subunits and chimeric beta  subunits containing the pore domain of the alpha  subunit have the same cAMP sensitivity as alpha -only channels. The results disclose the key role of two domains distinct from the nucleotide binding site in the gating of heteromeric channels by cAMP: the pore of the beta  subunit, which has an activating effect, and a conserved domain situated downstream of the cGMP-binding site in the alpha  subunit (I609-K665), which inhibits this effect.


    INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

The cyclic GMP-activated rod channels, situated in the plasma membrane of retinal rod outer segments, are responsible for the entry of cations (mainly sodium, but also calcium) in the cell in the dark. Upon light-induced activation of the phototransduction cascade the concentration of cGMP is reduced, which results in closure of the channels and hyperpolarization of the cell. The retinal rod channel belongs to the family of cyclic nucleotide-gated (CNG) channels, involved in sensory transduction, which are activated by direct binding of the cyclic nucleotide to a site situated in the cytoplasmic C-terminal region. The three types of CNG channels (rod, olfactory neuron, and cone channels) are tetramers (for a review see Zagotta and Siegelbaum, 1996) composed of at least two (rod, cone) or three (olfactory neuron) types of homologous subunits (Chen et al., 1993; Körschen et al., 1995; Biel et al., 1996; Sundin et al., 2000; Kohl et al., 2000; Gerstner et al., 2000; Liman and Buck, 1994; Bradley et al., 1994; Sautter et al., 1998; Bönigk et al., 1999). Only the alpha  subunits can form functional channels when expressed alone; beta  subunits have no channel activity on their own, but when co-expressed with alpha  subunits, modify several characteristics of the channels, among which is the sensitivity to cAMP. The sensitivity to cAMP of heteromeric rod channels expressed in oocytes is higher than that of alpha -only channels (Fodor and Zagotta, 1996; Gordon et al., 1996; Shammat and Gordon, 1999; Pagès et al., 2000), and similar to that of native channels (Tanaka et al., 1989; Gavazzo et al., 1996; Picco et al., 1996). The rod heteromeric channel is also much more sensitive to L-cis-diltiazem (Chen et al., 1993; Körschen et al., 1995) than the homomeric channel. This property can be used to check that the two subunits indeed associate, or to estimate the homogeneity of the channel population obtained when co-injecting alpha  and beta  mRNAs.

The structure of the nucleotide binding site of the rod alpha  subunit was predicted by homology with the cAMP binding site of the catabolite gene activator protein (CAP) of Escherichia coli (Kumar and Weber, 1992), which is also homologous to that of the regulatory subunits of the cAMP- and cGMP-activated protein kinases (Kaupp et al., 1989; Shabb and Corbin, 1992): it consists of an alpha -helix (A), followed by eight beta -rolls, and two additional alpha -helices (B and C). In CAP, binding of cAMP modifies the orientation of the DNA binding domain situated downstream of the cAMP binding site (Passner et al., 2000), while in the regulatory subunits of cAMP/cGMP dependent kinases, the effector domain is situated upstream of the nucleotide binding site, revealing some variability in cyclic nucleotide-induced activation. Binding of the nucleotide to the nucleotide binding site in CNG channels induces an allosteric transition that allows the channel to open, and cations to pass through the pore formed by the assembled pore-domains of the four subunits. The pore is homologous to that of voltage-gated K+ channels except at the level of the selectivity filter, where it is shorter. Structure predictions of the pore domain of the rod channel, based on the structure of the KcsA K+ channel (Doyle et al., 1998; Perozo et al., 1999) have allowed great progress in the approach of the gating mechanism. The pore of the alpha  subunit was shown to undergo a conformation change associated with channel opening (Becchetti et al., 1999; Becchetti and Roncaglia, 2000; Liu and Siegelbaum, 2000). Recently, it was proposed that rotation of the domain situated between the last transmembrane helix (S6, downstream of the pore domain) and the nucleotide-binding site ("C-linker") initiates rotation of S6 and pore opening (Johnson and Zagotta, 2001; Flynn and Zagotta, 2001).

A segment of ~50 residues, situated immediately downstream of the C-helix of the binding site in the rod channel alpha  subunits (I611-K665), is highly conserved among rod, olfactory neuron, and cone channels (Fig. 1). This domain was classified as "PD004548" in the ProDom release 2000.1 (Corpet et al., 2000) when this work started. In the ProDom release 2001.2, PD004548 also includes part of the last helix (alpha C) of the nucleotide binding site. A conserved domain (PD012882) is present in a similar position downstream of the nucleotide binding site of all known (bovine, human, rat) rod beta  subunits (1202-1282 in the bovine rod beta  subunit); this domain is not conserved in other beta  subunits, but the second olfactory beta  subunit (Sautter et al., 1998: CNG4.3; Bönigk et al., 1999: CNGbeta 1b), which associates with the other olfactory OCNC1 and OCNC2 subunits to form the olfactory neuron channel, is identical to the rod beta  subunit. This suggests that the domains downstream of the cGMP-binding site may be important for channel assembly or function. According to PHD (Profile network prediction HeiDelberg) structure prediction (Rost and Sander, 1993) (Fig. 1), PD004548 (alpha  subunit) downstream of the cGMP-binding site consists for the most part of an alpha -helix (K619-F663), which is predicted by the program COILS (Lupas, 1996) as having a high probability of forming a coiled-coil domain (not shown). The PD012882 domain in the beta  subunit also presents a predicted alpha -helical structure composed of two helices (P1219-M1232 and R1241-K1270); the second alpha -helix is also susceptible to form a coiled-coil domain, although with a lesser probability than the alpha -helix in PD004548.



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FIGURE 1   C-terminal domains of the rod channel alpha  and beta  subunits. A ProDom NCBI-BLASTP2 search was performed for the C-terminal domains downstream of the cGMP-binding site of the bovine rod alpha  (609-690) (CNG1  bovin) and beta  (1202-1394) (CNG4  bovin) subunits (ProDom server, Corpet et al., 2000. Two conserved domains were found: PD004548 for the alpha  subunit (26 sequences, including rod, olfactory neuron and cone alpha  subunits from mammals, chick rod and cone alpha  subunits, and CNG channel from catfish, Drosophila, and C. elegans), and PD012882 for the beta  subunit (6 sequences, corresponding to all known rod beta  subunits). The sequences corresponding to these domains are boxed on the sequence of the C-terminus of the bovine rod alpha  (CNG1) and beta  (CNG4c, Biel et al., 1996) subunits. The residues that are predicted to form an alpha -helix (The PredictProtein server for protein structure prediction, Rost and Sander, 1993) are in bold letters and boxed. The sites of truncations are indicated by arrows. The nucleotide binding site ends at the C-terminal end of the alpha C helix. The scheme represents the common secondary structure of alpha  and beta  subunits. Alignments of several sequences corresponding to the part of PD004548 and PD012882 domains situated downstream of the nucleotide binding site are shown below each sequence. The sequence of the bovine rod beta  subunit in the alignment is that of Körschen et al., 1995.

The pore domains of all CNG channel alpha  subunits are highly homologous, and all lack the YG residues in the GYGD sequence which is characteristic of the K+ channel selectivity filter. The pore domain of beta  subunits from rod and cone channels is homologous to that of alpha  subunits, but has different charged residues. An alignment is shown in Fig. 2.



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FIGURE 2   Alignment of the pore domains of rod, olfactory neuron (olf), and cone alpha  and beta  subunits. Conserved charged residues are boxed.

We took advantage of the different properties of homomeric and heteromeric channels concerning the sensitivity to cAMP to investigate the possible role of the conserved C-terminal domains of the alpha  and beta  subunits, which has not been studied previously. We report here a study of several C-terminal truncations of the alpha  subunit, expressed alone or co-expressed with beta  subunits, wild type, or truncated in their C-terminal domain. We also studied possible functional differences conferred by the pore of the beta  subunit by constructing chimeras of the two rod subunits with exchanged pore domains.


    MATERIALS AND METHODS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

cDNAs and mutations

The bovine rod alpha  subunits were a gift of Prof. U. B. Kaupp. The bovine rod beta  subunit CNG4c (Biel et al., 1996) starting at V572 downstream of the GARP region previously described (Pagès et al., 2000) was used. Residue numbers in the beta  subunit correspond to the sequence of the complete beta  subunit (Körschen et al., 1995). The alpha  and beta  subunits are inserted in the pGemHe vector (Liman et al., 1992), and the ATG codon is preceded by a Kozak consensus sequence (CCACC) (Kozak, 1984). Truncations were constructed by PCR by introducing a stop codon at the required position.

Construction of the beta [alpha -pore] chimera

A fragment of the beta  subunit containing the pore was subcloned into pBluescript. EcoRI and BamHI restriction sites were introduced by silent mutations at the 5' and 3' ends of the pore domain: ggG AAT TCt (EcoRI) in 5' at the position corresponding to G933N944S945, and ccG GAT CCt (BamH1) in 3' at the position corresponding to P964D965P966. The two complementary oligonucleotides corresponding to the complete pore domain of the alpha  subunit with the EcoR1 and BamH1 restriction sites at the 5' and 3' ends were synthesized and ligated in place of the pore domain in the beta  subunit fragment. The fragment containing the pore of the alpha  subunit was then exchanged for the corresponding fragment in the wild-type beta  subunit, giving the beta [alpha -pore] construct (corresponding mutated protein domain: N944SYVYSLYWSTLTLTTIGETPDP966).

Construction of the alpha [beta -pore] chimera

A fragment of the alpha  subunit containing the pore was subcloned into pBluescript. The EcoR1 and BamH1 sites were introduced at the 5' and 3' ends of pore domain of the alpha  subunit cDNA, mutating the A344R345K346 sequence upstream of the pore into ANS (GCG AAT TCA), and the last three residues of the pore (P365P366P367) into PDP (ccG GAT CCt). The pore domain of the beta  subunit with the EcoR1/BamH1 restriction sites was excised from the mutated beta  construct (containing the two restriction sites) in pBluescript, and ligated in place of the pore of the alpha  subunit. A wild-type fragment containing the pore in the complete alpha wt cDNA in pGemHe was then exchanged for the corresponding fragment containing the pore of the beta  subunit, giving the alpha [beta -pore] construct (corresponding protein domain: N345SYIRCYYWAVKTLITIGGLPDP367). All mutations were verified by sequencing.

Channel expression

Capped mRNAs were synthesized in vitro from linearized plasmids in the presence of RNA cap structure analogs (New England Biolabs, Beverly, MA), and injected into Xenopus oocytes (25 ng/oocyte for macroscopic currents or 0.25 ng/oocyte for single-channel records). For coexpression of alpha  and beta  subunits, beta  mRNA and alpha  mRNA were mixed and injected into the oocyte. The beta /alpha ratio was between 2 and 3. Oocytes were incubated in Barth's medium for 2-10 days at 19°C for macroscopic currents (or at 4°C after 18-24 h at 19°C for single-channel currents) before measurements.

Patch-clamp recording of excised inside-out patches

The solution in the pipette and in the perfusion medium was 100 mM KCl, 10 mM EGTA/KOH, 10 mM Hepes/KOH, pH 7.2. The cytoplasmic face of the patch was superfused by solutions containing variable nucleotide concentrations using an RSC100 rapid solution changer (Bio-Logic, Claix, France). The saturating cGMP and cAMP concentrations were, respectively, 500 µM and 20 mM. Currents were recorded with an RK-400 patch amplifier (Bio-Logic).

Pomax (open probability at saturating concentrations of cGMP and cAMP) was obtained from single-channel record analysis. Single-channel records at +80 mV (20-30-s duration) sampled at 33 kHz and numerically filtered (Hanning window) at 1 kHz were used to compute amplitude histograms using the Bio-Patch software (Bio-Logic). The same current interval (4 pA) for all records was divided into 50 classes for building the histograms. The maximum number of events/pA was at least 106. The histograms were fitted with two or three Gaussian curves. Similar Pomax values were obtained from records filtered at 4 kHz, as previously described (Pagès et al., 2000).

Macroscopic currents induced by voltage steps (500 ms, ±80 mV) were low-pass filtered at 300 Hz and digitized at 1 kHz using pCLAMP 6.0 (Axon Instruments, Union City, CA). The series resistance was compensated for (resulting value <1 MOmega ). Each record was averaged three times. Dose-response curves were obtained by plotting the current at +80 mV as a function of nucleotide concentration after subtraction of the leak current.

Curve fitting

Data were fitted with the Hill equation or the Monod-Wyman-Changeux (MWC) model (Monod et al., 1965) using the Microcal Origin software.

Hill equation

I/Imax = 1/(1 + (EC50/X)nH), with EC50 the ligand concentration that gives half-maximal effect, nH the Hill number, and X the ligand concentration.

MWC model

Assuming that the rod channel is a tetramer (Liu et al., 1996), the proportion of channels in the R (open) state is given by <A><AC>R</AC><AC>&cjs1171;</AC></A> = (1 + X/KR)4/((1 + X/KR)4 + L (1 + cX/KR)4), in which X is the ligand concentration, L = [T]/[R], T corresponds to the closed state, and c = KR/KT (dissociation constants of the ligand for the R and T states).

Chemicals

L-cis-Diltiazem was a gift of Synthelabo Recherche (Bagneux, France).


    RESULTS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

Role of the C-terminal domains

To determine whether the C-terminal domains downstream of the nucleotide binding site may be involved in channel gating, we studied the effect of C-terminal truncations on the efficacy of cAMP and cGMP. The sites of truncation were chosen according to the predicted structure of the C-terminal domains (Fig. 1). The alpha  subunit was truncated after K665 (the last residue of the conserved PD004548 domain), R656 (deleting part of PD004548), and D608 (deleting the whole C-terminal domain downstream of the nucleotide binding site, including the last two residues of the alpha C-helix). The beta  subunit was truncated after S1271 (at the end of the predicted helical domain of PD012882), L1221 (the third residue of the first predicted alpha  helix of PD012882 downstream of the nucleotide binding site), and N1202 (deleting the whole C-terminal domain downstream of the nucleotide binding site). Like the beta wt subunit, the truncated beta  subunits did not give rise to channel activity when expressed alone. The selectivity for cGMP versus cAMP was determined from single-channel records (from the open probability at saturating cGMP and cAMP concentrations) and from macroscopic currents (Imax(cAMP)/Imax(cGMP) ratios) to obtain sufficient data for statistical analysis. When measuring macroscopic currents, the extent of inhibition by L-cis-diltiazem was used as a tool to test the homogeneity of the channel population: since the effect of diltiazem on mutated channels is unknown, this was first determined from single-channel records. The EC50 of several constructions for cGMP and cAMP were determined from macroscopic currents. All measurements were performed on excised inside-out patches.

Single-channel records

The alpha wt subunit or the truncated alpha  subunits (alpha K665stop, alpha R656stop, and alpha D608stop) were co-expressed with beta wt or the truncated beta L1221stop. Single-channel records were used to determine the open probability of the different heteromeric channels in the presence of saturating concentrations of cGMP (Pomax cGMP), cGMP + L-cis-diltiazem, and cAMP (Pomax cAMP). The unitary currents had either the characteristics of alpha -only channels or markedly different characteristics, which were therefore attributed to heteromers. As previously described for oocytes co-injected with alpha wt and beta wt mRNAs (Pagès et al., 2000), no channels with intermediate characteristics were observed, suggesting a unique subunit stoichiometry. Previous studies indeed suggest that under the condition used, heteromers of alpha 2beta 2 stoichiometry are obtained (Shammat and Gordon, 1999; He et al., 2000). Examples of single- (or two-) channel records of cGMP- and cAMP-induced currents from oocytes expressing heteromeric channels are shown in Fig. 3, and mean values (when possible) are displayed in Table 1.



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FIGURE 3   Examples of unitary cGMP and cAMP-induced currents for control wild-type channels and heteromeric channels with truncated alpha  subunits (K665stop, R656stop, and D608stop) co-expressed with beta wt or beta  L1221stop. cGMP: 500 µM; cAMP: 20 mM. Pomax values are obtained from the histograms computed from the whole length of the records shown. alpha wt: 0.93 (cGMP), 0.03 (cAMP); alpha wt + beta wt: 0.98 (cGMP), 0.12 (cAMP); alpha K665stop + beta wt: 0.83 (cGMP), 0.11 (cAMP); alpha K665stop + beta L1221stop: 0.94 (cGMP), 0.17 (cAMP); alpha R656stop + beta wt: 0.99 (cGMP), 0.32 (cAMP); alpha R656stop + beta L1221stop: 0.84 (cGMP), 0.45 (cAMP); alpha D608stop + beta L1221stop: 0.93 (cGMP), 0.86 (cAMP). A two-channel record is shown for alpha D608stop + beta wt (Pomax cGMP = 0.83, Pomax cAMP = 0.68): the high Pomax cAMP, with numerous simultaneous openings of two channels, unambiguously indicates that both channels are heteromers. Inhibition of the cGMP-induced current (500 µM cGMP) by L-cis-diltiazem (50 µM) is close to 100% for all channels, except alpha wt-only channels (11%), alpha D608stop/beta wt (60%), and alpha D608stop/beta L1221stop (46%). For calculation of Pomax in the patch with 2 channels (alpha D608stop/beta wt), the following formula was used: Pomax = 1 - Sq. root (1 - Po(measured)). Mean values of several experiments are given in Table 1. The activity of heteromeric channels with alpha K665stop and alpha R656stop subunits is more flickering than that of alpha wt channels, as previously described for alpha wt/beta wt (Körschen et al., 1995). In the examples shown, the activity of heteromers containing the alpha D608stop subunit seems less flickering, and the amplitude of the cGMP- and cAMP-induced unitary currents appears smaller than that of wild-type channels (~1 pA compared to 1.35 pA).


                              
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TABLE 1   Characteristics of unitary currents from wild-type rod channels (alpha wt, alpha wt/beta wt), and heteromeric channels composed of truncated alpha  subunits (alpha K665stop, alpha R656stop, or alpha D608stop) and beta wt or beta L1221stop

Records from control alpha wt and alpha wt/beta wt channels are shown for comparison: direct measurement of Pomax cAMP has not as yet been reported, but the values are consistent with published Imax(cAMP)/Imax(cGMP) ratios, and records in the presence of cGMP and cGMP + diltiazem are consistent with our previous results (Pagès et al., 2000).

For all the mutated channels tested, the Pomax cGMP is close to 1, as observed for alpha wt/beta wt channels, suggesting that neither C-terminal domain plays a major role in cGMP-induced activity. This high Pomax value allows unambiguous determination of the number of channels in the patch. The sensitivity to cAMP is, however, clearly modified by truncating the alpha  subunit: a remarkable increase in Pomax cAMP is observed for alpha D608stop-containing heteromeric channels, and also, to a lesser extent with the alpha R656stop subunit, while alpha K665stop-containing heteromeric channels are very similar to alpha wt/beta wt channels. For the three truncated alpha  subunits results obtained with beta wt and beta L1221stop are similar, although with an apparently higher sensitivity to cAMP for beta L1221stop compared to beta wt.

Inhibition by L-cis-diltiazem is close to 100% for alpha K665stop- and alpha R656stop-containing heteromers, but notably reduced for the heteromeric channels containing the shorter alpha  subunit alpha D608stop, with values intermediate between that for alpha wt and that for alpha wt/beta wt.

Although no single-channel record was obtained for alpha D608stop/beta wt, and only one or two measurements are given in Table 1 for alpha R656stop/beta wt, alpha D608stop/beta L1221stop, and alpha R656stop/beta L1221stop, qualitatively similar results were obtained for each channel type from several patches in which two or more channels were present: the example of a two-channel record shown in Fig. 3 for alpha D608stop/beta wt channels clearly reveals an increased sensitivity to cAMP and reduced sensitivity to diltiazem compared to alpha wt/beta wt channels. For alpha R656stop- and alpha K665stop-containing heteromeric channels, ~100% inhibition by diltiazem was also measured in several patches with two or three channels.

It is important to note that the Pomax values obtained from single-channel analysis may slightly vary depending on the record, due to the irregular occurrence of long closed periods, which are particularly frequent and long in cAMP, but also present in cGMP. The absence, or the long duration, of closed periods within the records used for analysis may lead to overestimated or underestimated Pomax values. As we failed to obtain a sufficient number of patches with a single channel, these values should be considered as indicative.

Macroscopic current measurements

Activity of rod alpha  subunits truncated in their C-terminal domain (homomeric channels). As a control, the activity of the truncated alpha -only channels was studied from macroscopic current analysis. The results show that currents from all the truncated alpha -only channels present Imax(cAMP)/Imax(cGMP) ratios similar to those observed with alpha wt channels (Table 2). The EC50 for cGMP of alpha D608stop (33 ± 1 µM, see Fig. 6 below) is similar to that previously measured for alpha wt channels (29.9 ± 0.8 µM; Pagès et al., 2000), and inhibition by diltiazem is similar for the truncated and complete alpha  subunits. Therefore, in the case of homomeric alpha  channels, the whole domain downstream of D608 at the C-terminal end of the alpha C-helix of the nucleotide binding site can be deleted without a detectable effect on cGMP- and cAMP-induced currents.


                              
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TABLE 2   Characteristics of macroscopic currents from rod homomeric alpha  channels (wt, alpha K665stop, alpha R656stop, or alpha D608stop), and from heteromeric channels composed of alpha  (wt or truncated) and beta  (wt or L1221stop) subunits

Activity of heteromeric channels composed of wild-type or truncated alpha  and beta  subunits. When measuring macroscopic currents from oocytes co-injected with the mRNAs of the two types of subunits, the homogeneity of the channel population in the patches was checked by comparing the selectivity for cGMP versus cAMP and the sensitivity to L-cis-diltiazem to those determined from unitary currents (Table 1).

The results obtained with truncated alpha  subunits co-expressed with beta wt subunits are indicated in Table 2. Consistent with the single-channel records, the Imax(cAMP)/Imax(cGMP) ratio is similar to that of alpha wt/beta wt channels when the beta wt subunit is co-expressed with the truncated alpha K665stop, and significantly higher when it is co-expressed with the shorter alpha D608stop subunit. For alpha R656stop/beta wt, however, the Imax(cAMP)/Imax(cGMP) ratio is not significantly different from that measured for alpha wt/beta wt channels, and both the Imax(cAMP)/Imax(cGMP) ratio and inhibition by L-cis-diltiazem are notably lower than those measured from single-channel records. Although, as noted above, there might be some uncertainty in the Pomax(cAMP)/Pomax(cGMP) ratios in Table 1, the lower inhibition by diltiazem measured from macroscopic currents from oocytes co-injected with alpha R656stop and beta wt mRNAs suggests that the patches contained a nonnegligible proportion of alpha -only channels. When measuring single-channel records from these oocytes and from oocytes co-injected with alpha D608stop and beta wt mRNAs, channels with alpha -only characteristics were indeed observed. This suggests that for these two channel types, the Imax(cAMP)/Imax(cGMP) ratios might be underestimated. The reason for this heterogeneity remains unclear.

In contrast, results from macroscopic currents obtained with heteromeric channels containing the truncated beta L1221stop subunit (Imax(cAMP)/Imax(cGMP) ratio and extent of inhibition by L-cis-diltiazem) are close to those obtained from single-channel records, suggesting that in these cases the channel populations mainly consisted of heteromeric channels. The increase of the Imax(cAMP)/Imax(cGMP) ratio associated with increasing truncation of the alpha  subunit is illustrated by examples of current records in Fig. 4, and mean values of several measurements are indicated in Table 2: as observed in single-channel records, truncation downstream of K665 has little or no effect, while the Imax(cAMP)/Imax(cGMP) ratio is markedly increased for alpha R656stop/beta L1221stop channels, and dramatically increased for alpha D608/beta L1221stop channels. Qualitatively similar results were obtained with the two other truncated beta  subunits beta S1271stop and beta N1202stop. Dose-response curves for cGMP and cAMP measured with alpha wt/beta L1221stop channels and alpha D608stop/beta L1221stop channels are shown in Fig. 5. The EC50 of alpha D608stop/beta L1221stop channels for cAMP (224 ± 6 µM) is dramatically reduced compared to that measured for an alpha wt/beta wt or alpha wt/beta L1221 channel; the EC50 for cGMP (22 ± 2 µM) is also reduced, to a lesser extent, compared to that of alpha wt/beta wt channels or an alpha wt/beta L1221 channel. The characteristics of alpha wt/beta L1221stop channels (Imax(cAMP)/Imax(cGMP) ratio, Table 2; EC50 for cGMP and cAMP, Fig. 5) are slightly different from those of alpha wt/beta wt channels. Statistical analysis of the data suggests that the Imax(cAMP)/Imax(cGMP) ratio measured with alpha wt/beta L1221stop is significantly higher, and the EC50 for cGMP and cAMP significantly lower than those measured with alpha wt/beta wt channels. Thus, truncating the C-terminal domain of the beta  subunit downstream of the nucleotide binding site may have a slight effect on cGMP and cAMP sensitivity, but this effect is much less dramatic than that of truncating the C-terminal domain of the alpha  subunit. Both effects may add up in the double mutant, and account for the apparently higher cAMP sensitivity of alpha D608stop/beta L1221stop compared to alpha D608stop/beta wt channels (Table 2 and records in Fig. 3). The effects of truncating the C-terminal domains of alpha  and beta  subunits on the EC50 for cGMP and cAMP and on the Imax(cAMP)/Imax(cGMP) ratios are summarized in Fig. 6.



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FIGURE 4   Examples of macroscopic cGMP and cAMP-induced currents illustrating the effect of C-terminal truncation of the alpha  subunit on the cAMP sensitivity of heteromeric channels containing the beta L1221stop subunit. cGMP: 500 µM; cAMP: 20 mM. The activity of the four channel types can be attributed for the most part to heteromeric channels by comparison of their sensitivity to L-cis-diltiazem and Imax(cAMP)/Imax(cGMP) ratio to those of single channels. Mean values of several experiments are indicated in Table 2. The left part of each record is the current recorded at -80 mV, and the right part the current at +80 mV (see Methods).



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FIGURE 5   Dose-response curves for cGMP and cAMP-induced macroscopic currents from oocytes expressing heteromeric alpha wt/beta L1221stop and alpha D608stop/beta L1221stop channels. The symbols represent the mean of different experiments, ±SE. cGMP-induced currents are normalized to 1, and cAMP-induced currents to the Imax(cAMP)/Imax(cGMP) ratio from Table 2. The fits of all the points to the Hill equation are shown on the graph. For alpha wt/beta L1221stop: EC50 cGMP = 27 ± 1 µM, nH = 2.3 ± 0.1 (7 patches), and EC50 cAMP = 1353 ± 18 µM, nH = 1.5 ± 0.1 (6 patches). For alpha D608stop/beta L1221stop: EC50 cGMP = 22 ± 2 µM, nH = 2.2 ± 0.2 (8 patches), and EC50 cAMP = 224 ± 6 µM, nH = 2.2 ± 0.1 (8 patches). Hill fits of the dose-response curves for alpha wt/beta wt (from Pagès et al., 2000) are indicated on both graphs with thin lines (EC50 cGMP: 35 ± 0.6 µM, nH = 2 ± 0.1; EC50 cAMP: 1607 ± 31 µM, nH = 1.45 ± 0.04). Note that the Hill number of the cAMP dose-response curve is lower than that of the cGMP dose-response curve for alpha wt/beta wt and alpha wt/beta L1221stop channels, while the two nH values are identical for the double mutant, consistent with the predictions of the MWC model according to which nH increases with the gating efficacy of the ligand (Rubin and Changeux, 1966; see also Pagès et al., 2000). The sets of data for EC50 cGMP, EC50 cAMP, and Imax(cAMP)/Imax(cGMP) measured from each experiment with alpha wt/beta L1221stop are significantly different from the corresponding sets of data measured with alpha wt/beta wt, with p = 5.10-4, 0.006, and 0.028, respectively (independent t-test on two populations). The set of data for EC50 cGMP measured with alpha D608stop/beta L1221stop is significantly different from that measured with alpha wt/beta wt with p = 7.10-5.



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FIGURE 6   Summary of the effect of C-terminal truncations of alpha  and beta  subunits on EC50 cGMP, EC50 cAMP, and Imax(cAMP)/Imax(cGMP). Statistical box charts for EC50 (obtained by fitting each individual dose-response curve with the Hill equation) and Imax(cAMP)/Imax(cGMP) ratios (obtained from Imax cAMP and Imax cGMP measured on the same patch), from macroscopic current measurements. Dose-response curves for cAMP were measured on patches that had very large cGMP-induced currents in the case of channel constructs with a low cAMP sensitivity (usually different patches were used for the two ligands). Data for alpha wt and alpha wt/beta wt are from Pagès et al. (2000). The vertical lines in the box denote the 25th, 50th, and 75th percentile values. The error bars denote the 5th and 95th percentile values. The crosses are the extreme values, and the square in the box is the mean of the data. EC50 cGMP: 29.9 ± 08 µM, 8 patches (alpha wt); 33 ± 1 µM, 7 patches (alpha D608stop); 35 ± 0.6 µM, 11 patches (alpha wt + beta wt); 27 ± 1 µM, 7 patches (alpha wt + beta L1221stop); 22 ± 2 µM, 8 patches (alpha D608stop + beta L1221stop). EC50 cAMP: 2077 ± 172, 8 patches (alpha wt); 1607 ± 31 µM, 9 patches (alpha wt + beta wt); 1353 ± 18 µM, 6 patches (alpha wt + beta L1221stop); 224 ± 6 µM, 8 patches (alpha D608stop + beta L1221stop). For mean values of Imax(cAMP)/Imax(cGMP) ratios, see Table 2.

Density of functional channels at the plasma membrane. Macroscopic currents provide additional information that is not accessible from single-channel records: the amplitude of the currents, compared to that of control oocytes injected the same day with wild-type mRNAs, reflects the density of functional channels at the plasma membrane. While large currents of the same order as currents from control oocytes are observed with homomeric channels formed by each of the three truncated alpha  subunits (Table 2) and with alpha K665stop- and alpha R656stop-containing heteromers, very small cGMP-induced currents are reproducibly measured when alpha D608stop mRNA is co-injected with beta wt or beta L1221stop mRNAs (~7% and 4% of the currents observed with control oocytes, respectively) (Table 2). For both channels, however, the Pomax cGMP was shown to be close to 1 (Table 1), and the possible reduction of unitary current amplitude (Fig. 3) is too small to account for the reduced amplitude of the currents. Very low currents were also obtained with oocytes co-expressing alpha D608stop and beta S1271stop, as well as the shorter beta  subunit beta N1202stop (therefore indicating that the low channel activity is not due to unmasking a retention or degradation sequence that could be present downstream of the nucleotide binding domain in the beta  subunit). This reduction of activity, which is little-affected by the length of the beta  subunit, is thus conferred by truncation of the alpha  subunit, although homomeric alpha D608stop channels have normal activity. alpha D608stop and beta  subunits nevertheless assemble with high efficiency; otherwise, large currents with alpha -only channel characteristics would be expected. It is possible that truncation of the alpha  subunit unmasks a retention or degradation sequence in another part of the beta  subunit. Another possible explanation could be that, in the absence of the C-terminal domain of the alpha  subunit, channels of different stoichiometries can be formed (alpha 3beta or alpha beta 3), but that they have no channel activity. This question will be addressed elsewhere.

Role of the pore domains

In an attempt to identify other domains that may be responsible for cAMP sensitivity, we constructed two chimeras of alpha  and beta  subunits: a beta  subunit with the pore domain of the alpha  subunit (beta [alpha -pore]) and the symmetric construction of the alpha  subunit with the pore domain of the beta  subunit (alpha [beta -pore]).

Like beta wt subunits, beta [alpha -pore] alone had no channel activity. In contrast, when beta [alpha -pore] mRNA was co-injected with alpha wt mRNA, cGMP-induced currents that could be inhibited by L-cis-diltiazem (67% ± 2%) were observed (Table 3), indicating that the channels were at least for a large part heteromeric channels. However, the cAMP sensitivity of these channels was reduced to that of alpha -only channels, or even lower (Imax(cAMP)/Imax(cGMP) = 0.024 ± 0.002). Because the sensitivity to cAMP of heteromeric channels containing truncated alpha  and beta  subunits is markedly increased (see above), we also studied the cAMP sensitivity of heteromeric alpha D608stop/beta [alpha -pore]L1221stop and alpha R656/beta [alpha -pore]L1221stop channels to determine which of the two modifications (pore exchange or C-terminal truncation) predominates. For these two types of channels (Table 3), cAMP sensitivity was inferior or equal to that of alpha -only channels, while L-cis-diltiazem sensitivity was unambiguously different from that of alpha -only channels, and close to that of alpha D608stop/beta L1221stop or alpha R656/beta L1221stop channels, respectively (Table 1), indicating that the channel population was mainly composed of heteromers. The Imax(cAMP)/Imax(cGMP) measured for heteromeric channels with chimeric beta  subunits having an alpha -pore domain are compared in Fig. 7 to those measured with the corresponding channels containing nonchimeric beta  subunits. These results show that the pore domain of the beta  subunit plays a key role concerning the gating efficacy of cAMP, and that C-terminal truncation of the alpha  subunit has no effect if the pore of the beta  subunit is exchanged for that of the alpha  subunit.


                              
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TABLE 3   Characteristics of macroscopic currents from heteromeric rod channels with chimeric beta  subunits having an alpha -pore domain



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FIGURE 7   Effect of exchanging the pore domain of the beta  subunit by that of the alpha  subunit on the sensitivity to cAMP of heteromeric channels. Statistical box charts for Imax(cAMP)/Imax(cGMP) ratios (from macroscopic Imax(cAMP) and Imax(cGMP) measured on the same patch) obtained for heteromeric channels containing beta wt or beta L1221stop subunits (right part, same data as in Fig. 6), or the corresponding chimeric beta  subunits in which the pore domain was exchanged for that of the alpha  subunit (left part). All the channel populations mainly consisted of heteromeric channels, as proved by the extent of inhibition by diltiazem (Tables 2 and 3). The Imax(cAMP)/Imax(cGMP) ratio of alpha wt channels is shown for comparison. Mean values are given in Tables 2 and 3. cGMP: 500 µM; cAMP: 20 mM.

No channel activity was detected with the alpha [beta -pore] subunit mRNA, either when injected alone or when co-injected with alpha wt mRNA, beta wt mRNA, or with beta [alpha -pore] mRNA.


    DISCUSSION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

The results presented here demonstrate the role of two domains of the retinal cGMP-activated channel, distinct from the nucleotide-binding site, concerning the sensitivity to cAMP: a conserved C-terminal domain situated downstream of the cGMP-binding site in the alpha  subunit (PD004548), and the pore domain of the beta  subunit. Exchanging the pore domains or removing the C-terminal domains produces much larger changes in sensitivity than any previously reported mutation.

The pore domain of the beta  subunit

The possible influence of the pore of the beta  subunit on the activity of heteromeric channels has not been studied previously. The striking finding presented here (Fig. 7) is that replacing the pore of the beta  subunit by that of the alpha  subunit completely abolishes the effect of the beta  subunit on the sensitivity to cAMP of heteromeric channels. Moreover, truncation of the C-terminal domain PD004548 in the alpha  subunit, which increases cAMP sensitivity, has no effect if the pore of the beta  subunit is exchanged for that of the alpha  subunit: this suggests that high cAMP sensitivity is in fact due to the beta -pore domain but is partially masked in the presence of alpha wt, and that the effect of deleting PD004548 in the alpha  subunit is to relieve this inhibition of cAMP sensitivity rather than to directly increase cAMP sensitivity.

The exchanged domains only comprise 16 residues: the alpha -pore segment V348YSLYWSTLTLTTIGET364 replacing I947RCYYWAVKTLITIGGL963 in the beta  subunit. The main difference between the two pore domains (Fig. 2) is the presence of distinct charged residues. E363 near the selectivity filter of the rod alpha  subunit was shown to be responsible for calcium block of homomeric alpha  channels (Root and MacKinnon, 1993; Eismann et al., 1994). Mutating the corresponding residue in the olfactory neuron alpha  subunit is also responsible for calcium blockage, and decreases the gating efficacy of both cGMP and cAMP (Gavazzo et al., 2000). The residue at the corresponding place in the beta  subunit is uncharged (G962), and an acid residue is situated three residues downstream (D965) in place of P366 in the alpha  subunit. In addition, there are two basic residues (R948 and K955) in the pore of the beta  subunit (corresponding to the hydrophobic residues Y349 and L356 in the alpha  subunit). Point mutations of the corresponding residues in the pore of the alpha  subunit will be needed to determine the residue(s) responsible for the effect. It is interesting that the pore of the third olfactory channel subunit (CNG4.3 or CNGbeta 1b, identical to the rod beta  subunit: Sautter et al., 1998; Bönigk et al., 1999) and that of the beta  subunit of the cone channel (human and mouse: Sundin et al., 2000; Kohl et al., 2000; Gerstner et al., 2000), which are also responsible for increased cAMP sensitivity of these channels, contain two basic residues and an acid residue at the same positions as the rod beta  subunit (Fig. 2). However, although the second olfactory channel subunit (OCNC2) also confers increased cAMP sensitivity to the alpha  subunit (Liman and Buck, 1994; Bradley et al., 1994) its pore does not contain the three charged residues as that of the other beta  subunits; in fact, for its pore domain, this subunit is homologous to an alpha  subunit.

The fact that the symmetric construct alpha [beta -pore], expressed alone or with beta wt subunits, has no channel activity suggests that four beta -pore domains are unable to form a functional cationic channel. However, this is not the only reason for the absence of activity of beta  subunits alone, because beta [alpha -pore]s have no channel activity either when expressed alone. The fact that alpha [beta -pore] has no channel activity when expressed with alpha wt or beta [alpha -pore] moreover suggests that the beta -pore domain may be unable to function when inserted in the alpha  subunit. Alternatively, the absence of detected activity could be due to rapid inactivation, as previously observed for several mutants of the residue E363 in the pore of the rod alpha  subunit (Bucossi et al., 1996); given our experimental conditions, however, we estimate that inactivation should be complete in <10 ms after the start of the voltage pulse to remain undetected.

The C-terminal domains

The other striking finding is the role of the C-terminal domain downstream of the cGMP-binding site of the alpha  subunit in heteromeric channel function. When the alpha  subunit truncated downstream of D608, which corresponds to the deletion of the whole C-terminal domain downstream of the cGMP-binding site, is co-expressed with truncated beta  subunits, a drastic effect on cAMP sensitivity is observed (Pomax cAMP measured from single-channel records and Imax(cAMP)/Imax(cGMP) ratio measured from macroscopic currents: Table 1 and 2). Truncation of the alpha  subunit C-terminus domain downstream of K665 has little effect, while truncation downstream of R656 has a partial but well-marked effect, suggesting that the presence of the entire predicted alpha -helix of the PD004548 domain downstream of the cGMP-binding site plays a major role for cAMP sensitivity of wild-type heteromeric channels.

The discrepancies between the values obtained from single-channel records and macroscopic current measurements might be explained by the irregular occurrence of long closed periods in cAMP-, and (although to a lesser extent) in cGMP-induced currents (see Fig. 3), which are fully taken into account in macroscopic currents, but poorly in single-channel analysis. The errors on Pomax (cAMP) and Pomax (cGMP) add up in the Pomax (cAMP)/Pomax (cGMP) ratio. However, a proportion of alpha -only channels can be present in the patches from oocytes injected with alpha  and beta  mRNAs used for macroscopic current measurements; comparing the values for the extent of inhibition by diltiazem in Table 1 (single-channel) and Table 2 (macroscopic currents) suggests that part of the macroscopic currents in patches from oocytes co-injected with alpha  and beta  mRNAs is due to homomeric channels.

The EC50 for cAMP measured from macroscopic currents of oocytes expressing alpha D608stop/beta L1221stop channels is also very much reduced (224 ± 6 µM), as is the EC50 for cGMP (22 ± 2 µM) compared to those of alpha wt/beta wt channels (1607 ± 31 µM and 35 ± 0.6 µM, respectively) (Fig. 5). After normalizing the dose-response curves to the Pomax values obtained from single-channel records, the dose-response curves for cAMP and cGMP of the alpha D608stop/beta L1221stop channel were fitted with the MWC allosteric model (Monod et al., 1965) (Fig. 8), which can be used as an approximation of the CNG channel mechanism (Zagotta and Siegelbaum, 1996). According to this model, stabilization of the open state is achieved independently of the ligand by decreasing the parameter L (L = [T]/[R], equilibrium constant between closed and open states in the absence of ligand), which is a characteristic of the protein. The equilibrium constant between fully liganded closed and open states being equal to Lc4, the open state can be stabilized in the presence of ligand by decreasing L and/or by decreasing c = KR/KT (ratio of the affinity of the ligand for the closed state to the affinity for the open state). Fig. 8 shows that it is possible to fit the data by only reducing c and KR for both ligands (without reducing L), but that decreasing L only cannot account for the data: when L is reduced, whatever its value, it is necessary to also decrease c (increase the gating efficacy) and KR (increase the affinity of the open state) for cAMP. Thus, interpreting the data with the MWC model suggests that, in alpha D608stop/beta L1221stop channels, the conformation of nucleotide binding sites is different from that of the wild-type channel; i.e., that the C-terminal domains constrain the conformation of the nucleotide binding sites, resulting in lowering the efficacy of cGMP and more particularly, cAMP (increase "c" and "KR"). The fit does not exclude that the truncation may in addition facilitate the transition to the open state (reduce "L"). It should be noted that although high cAMP sensitivity is conferred by the beta  subunit (as discussed above), most of the constraint is relieved by truncating the C-terminus of the alpha  subunit (compare dose-response curves for alpha wt/beta L1221stop and for alpha D608stop/beta L1221stop, Fig. 5), suggesting that intersubunit interactions are involved in the conformation of the oligomer.



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FIGURE 8   Fits of dose-response curves for alpha D608stop/beta L1221stop channels according to the MWC allosteric model (Monod et al., 1965). The data, ±SE, are the same as in Fig. 5, but are expressed in open probabilities; currents are normalized to the value of Pomax cGMP (0.93) and Pomax cAMP (0.86) from Table 1. The dose-response curves cannot be fitted with a reasonable error with the MWC model without fixing any of the parameters (L, c, KR). We have fitted the data for varying values of L between L = 7999 (measured for alpha wt, Tibbs et al., 1997) and L = 100 (chosen as the lowest value compatible with the absence of detectable spontaneous openings), corresponding to a probability of spontaneous openings Psp = 1/(L + 1) ~ 0.01. The fits corresponding to the extreme values are shown in A: the solid line corresponds to L = 7999 (KRcGMP = 1.47 ± 0.17 µM, c = 0.047 ± 0.007; KRcAMP = 17.6 ± 1.6 µM, c = 0.037 ± 0.005), and the dashed line corresponds to L = 100 (KRcGMP = 7.4 ± 1.5 µM, c = 0.094 ± 0.04; KRcAMP = 80 ± 8 µM, c = 0.077 ± 0.017). Note that these are only global values, since the simple MWC model does not take into account the existence of two types of sites. The values of c (for cGMP and cAMP) and of KR (for cGMP and cAMP) that give the best fit for each value of L are plotted in B and C as a function of L; error bars are shown for several points. The values calculated for alpha wt/beta wt channels with L = 7999 (Pagès et al., 2000) are indicated on the two plots with solid (cGMP) or open (cAMP) circles: c (cGMP) = 0.065 ± 0.001, c (cAMP) = 0.166 ± 0.001, and KRcGMP = 1.89 ± 0.04 µM, KRcAMP = 79 ± 0.4 µM. The graph in A shows that the data can be reasonably fitted with any value of L between 7999 and 100, although the fit with L = 100 appears less satisfying at low nucleotide concentrations. B and C show that it is not possible to fit the cAMP dose-response curve by reducing L only: reducing both KR(cAMP) and c are also necessary.

Finally, our results indicate that although L-cis-diltiazem sensitivity is conferred to the rod channel by the beta  subunit, the presence of part of the PD004548 domain in the alpha  subunit (D608-R656) is necessary for full inhibition of heteromeric channels. Complete inhibition of heteromeric channels containing truncated beta L1221stop subunits (alpha K665stop/beta L1221stop and alpha R656stop/beta L1221stop, Table