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Biophys J, October 2002, p. 2248-2258, Vol. 83, No. 4




*Dipartimento di Chimica Generale and
Dipartimento di
Biochimica, Università di Pavia, 27100 Pavia, Italy;
Dipartimento di Chimica, Università di Torino,
10125 Torino, Italy; §Dipartimento di Biologia Strutturale
e Funzionale, Università dell'Insubria, 21100 Varese, Italy; and
¶Dipartimento di Chimica Organica e Biochimica, Complesso
Universitario Monte S'Angelo, Università di Napoli Federico
II, 80126 Napoli, Italy
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ABSTRACT |
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The spectroscopic and reactivity properties of hemin complexes formed with cyanogen bromide fragments B (residues 1-123), C (124-298), A (299-585), and D (1-298) of human serum albumin (HSA) have been investigated. The complex hemin-D exhibits binding, spectral, circular dichroism, and reactivity characteristics very similar to those of hemin-HSA, indicating that fragment D contains the entire HSA domain involved in heme binding. The characteristics of the other hemin complexes are different, and a detailed investigation of the properties of hemin-C has been carried out because this fragment contains the HSA binding region of several important drugs. Hemin-C contains a low-spin Fe(III) center, with two imidazole ligands, but the complex undergoes a reversible structural transition at basic pH leading to a high-spin, five-coordinated Fe(III) species. This change determines a marked increase in the relaxation rate of water protons. Limited proteolysis experiments and mass spectral analysis carried out on fragment C and hemin-C show that the region encompassing residues Glu-208 to Trp-214 is protected from activity of proteases in the complex and, therefore, is involved in the interaction with hemin. A structural model of fragment C enables us to propose that His-242 and His-288 are the axial ligands for the Fe(III) center.
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INTRODUCTION |
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Heme is one of the most versatile prosthetic
groups present in metalloproteins, which play important roles in
electron transfer reactions, oxygen transport and storage, and a
variety of oxidation processes that use dioxygen, hydrogen peroxide, or
alkyl peroxides as terminal oxidants (Kadish et al., 1999
; Xie and
Dolphin, 1994
; Dawson, 1988
). In addition, heme serves regulatory
functions in many biological processes such as protein synthesis (Ochoa
and de Haro, 1979
), cellular growth and differentiation (Sassa, 1988
), and the activation of soluble guanylate cyclase by nitric oxide (Ignarro et al., 1982
). Heme is released in plasma upon rupture of red
blood cells in many events, including hemolysis, trauma and ischemia
reperfusion (Jacob, 1994
). In these conditions, it is currently thought
that human serum albumin (HSA) and hemopexin serve as traps for
extracellular heme, to prevent its toxic effects and convey it to its
specific catabolism site (Balla et al., 1993
). However, Miller and
Shaklai (1999)
have recently reported that HSA and hemopexin are not
capable of preventing oxidative damage of low-density lipoprotein by
the transient hemin. Hemopexin is the strongest heme-binding protein in
plasma (Kb 109
M
1 (Hrkal et al., 1974
)), and in normal
conditions albumin rapidly transfers the heme to hemopexin. However,
the abundance of hemopexin in plasma is low (10-20 µM), and albumin
can thus play an important role as heme carrier in conditions where
hemopexin is saturated (Peters, 1996
). Some recent results from
reactivity studies may extend the currently accepted role and
significance of heme binding by HSA. In fact, we have found that the
hemin-HSA complex exhibits catalase and peroxidase activity (Monzani et
al., 2001
). Although this activity is weak, considering the large
abundance of HSA, it may contribute to the antioxidant defense in the
extracellular fluids of the human body, where the presence of
antioxidant enzymes is scarce.
Although a detailed structural description of the heme binding site in
HSA is lacking, insight into its position has been obtained by circular
dichroism (CD) studies of the complexes between ferric heme and the
three recombinant HSA domains I (residues 1-197), II (residues
189-385), and III (residues 381-585) (Dockal et al., 1999
). Based on
these studies, it was concluded that the main contribution to the HSA
primary binding site for hemin is due to domain I. Other studies aimed
at addressing the location of the heme binding site were performed
using the large cyanogen bromide fragments of HSA (Hrkal et al., 1978
),
and in this case, it was proposed that the heme binding site is mainly
included in the HSA middle region corresponding to fragment C (residues 124-298) (Hrkal et al., 1978
). Spectroscopic studies on various derivatives of the hemin-HSA complex (Casella et al., 1993
; Monzani et
al., 2001
; Fasano et al., 2001
) and docking simulations (Fasano et al.,
2001
) based on the crystal structure of HSA (He and Carter, 1992
)
suggest that the heme iron center is axially bound to a histidine and
possibly to a tyrosine residue. This type of detailed analysis is
currently unavailable for the hemin complexes formed by the HSA
fragments. In the present paper we report the binding and spectral
properties as well as the reactivity of the hemin complexes of the
cyanogen bromide fragments of HSA, which, according to Lapresle (Doyen
et al., 1982
), here will be designated as B (residues 1-123), C
(residues 124-298), and A (residues 299-585). An additional fragment,
D (residues 1-298), made of B and C, which is a result of the
incomplete cleavage of the peptide bond between Met-123 and Cys-124 was
also used (Doyen et al., 1982
). For the adduct of fragment C with hemin
(hemin-C) and its analog with Mn(III)-protoporphyrin IX
(Mn(III)-PPIX-C), containing Mn(III) in the place of Fe(III), the
relaxometric properties were investigated. Moreover, the interaction
between hemin and fragment C has been studied by limited proteolysis
and mass spectrometry. The combination of the various approaches
allowed us to obtain a structural description of the heme environment
in this albumin fragment and showed that, although it is not fully
representative of the heme binding site, it contains a portion of the
HSA high-affinity site for the ligand.
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MATERIALS AND METHODS |
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Materials
HSA was purified from fresh serum by anion-exchange
chromatography on a DEAE Sephadex, column and the purity of the protein was checked by SDS-PAGE (Galliano et al., 1990
). The HSA fragments were
prepared according to Lapresle and Doyen (1975)
with slight modifications. The unreduced protein was treated with cyanogen bromide
in 70% formic acid, and the four fragments were fractionated by gel
filtration on a Superdex 75 column (80 × 1.6 cm) equilibrated with 5% propionic acid and 0.15 M NaCl followed by ion-exchange chromatography on carboxymethyl (CM) cellulose (2.5 × 10 cm) equilibrated with 0.01 M phosphate buffer, pH 2.7, and eluted with
a linear gradient from 0.05 to 0.3 M NaCl. The molar extinction
coefficients of the fragments were calculated on the basis of their
amino acid sequence with the Compute tool of ExPASy
(http://www.expasy.ch) at the University of Geneva, Switzerland. Hemin
chloride, trypsin treated with L-tosylamido-2-phenylethyl
chloromethyl ketone, chymotrypsin, subtilisin, and protease V8 were
purchased from Sigma Chemical Co. (St. Louis, MO). All other chemicals
(from Sigma) were reagent grade and used as received. Aqueous buffers
were prepared from double-distilled water. Hydrogen peroxide solutions
for kinetic experiments were prepared by dilution of a 30% aqueous
solution and were standardized by iodimetry. UV-Vis and CD spectra were measured with HP8452A (Hewlett-Packard, Waldbronn, Germany) and CADAS
(Dr. Lange, Berlin, Germany) spectrophotometers and a J710 (Jasco
Europe, Cremella, Italy) dichrograph, respectively. The RP-HPLC C18
column (250 × 2.1 mm) was purchased from Phenomenex (Palo Alto, CA).
Binding experiments
Binding experiments of hemin or Mn(III)-PPIX to the HSA
fragments were studied spectrophotometrically using an optical cell with 10-cm path length. A small amount of a solution of hemin in
dimethylsulfoxide (DMSO; ~3×10
3 M) was
diluted in the optical cell in a solvent mixture of DMSO-aqueous 0.1 M
phosphate buffer, pH 7.0, 1:10 (v/v), or 2:10 (v/v) in the case of
fragment D (final protein concentration ~5 × 10
7 M). This solution was titrated with the HSA
fragment by adding small amounts of an ~0.3 mM protein solution in
the aqueous buffer and recording the spectrum after incubation for a
few minutes after each addition. Difference spectra with respect to
hemin were taken, and the binding isotherm was analyzed by plotting the
difference of absorbance between the maximum and the minimum of the
two-signed difference spectra against the protein concentration. The
equation derived for a high-affinity equilibrium was applied to fit the
binding data (Monzani et al., 2001
).
Kinetics
The kinetic experiments on the catalytic oxidation of phenolic
substrates by hydrogen peroxide in the presence of hemin-HSA fragments
were carried out in a magnetically stirred and thermostated optical
cell of 1-cm path length, at 25.0 ± 0.1°C, in 0.1 M phosphate buffer, pH 7.0, following procedures described previously for the
reactions catalyzed by the hemin-HSA complex (Monzani et al., 2001
).
The phenolic substrates studied were p-cresol,
p-hydroxyphenyl propionic acid, tyramine, and
L- and D-tyrosine. For each
substrate, the reaction rates were studied as a function of both
hydrogen peroxide and substrate concentrations. The reactions were
followed spectrophotometrically at 300 nm, where the dimeric products
of phenol coupling absorb (Casella et al., 1994
). The initial rates were determined from the linear part of the plots of
absorbance versus time. The 
values necessary to convert the rate data from
absorbance/s to M/s were reported previously (Monzani et al., 2001
).
NMR relaxation
Water proton T1 measurements were obtained
on a Stelar SpinMaster Spectrometer (Stelar, Mede, Italy) operating at
20 MHz, by means of the inversion-recovery technique (16 experiments; 4 scans) (Braun et al., 1998
). Magnetization values were obtained by
averaging the first 128 data points of the free induction decay. A
typical 90° pulse width was 3.5 µs. The reproducibility in
T1 measurements was ±0.5%. The temperature was
controlled by a Stelar VTC-91 airflow heater, equipped with a
copper-constantan thermocouple; the actual temperature in the probe
head was measured with a Fluke 52 k/j digital thermometer (Fluke,
Zürich, Switzerland), with an uncertainty of ±0.3°C.
Values of r1p were determined by
subtracting from the observed relaxation rate
(R

Variable temperature 17O-NMR linewidth measurements were recorded at 9.4 T on a JEOL EX-400 spectrometer (JEOL, Tokyo, Japan), equipped with a 5-mm inner diameter probe head, with a D2O external lock. Sample solutions were supplemented with enriched H217O (Cortec, Paris, France) to an isotopic abundance of 2.6%. Experimental settings were 22-kHz spectral width, 90° pulse for 14 µs, 0.75-s acquisition time, 256 scans, and no sample spinning.
Limited proteolysis experiments
Limited proteolysis experiments were carried out by incubating fragment C or the hemin-C complex with trypsin, chymotrypsin, subtilisin, and protease V8 as enzymatic probes. Digestions were all performed in 100 mM sodium phosphate (pH 7.0) containing 8% DMSO, at 30°C and using various enzyme to substrate (E/S) ratios (w/w). The extent of the reaction was monitored on a time course basis by sampling the incubation mixture at different time intervals. Digested protein samples were acidified by adding trifluoroacetic acid (TFA) to lower the pH. Peptide mixtures from the different proteolysis experiments were fractionated by reverse-phase HPLC on a Phenomenex C18 column. Peptides were eluted by means of a linear gradient from 5% to 60% of acetonitrile in 0.1% aqueous TFA over 60 min, and elution was monitored at 220 and 280 nm. Fractions were manually collected and identified by electrospray mass spectrometry ES/MS.
The complex hemin-C was formed by incubation of fragment C in 100 mM sodium phosphate, pH 7.0, and a 10-fold molar excess of a hemin solution in DMSO to obtain 8% DMSO as a final concentration; the complex was then allowed to form for 10 min at 30°C before the protease addition.
Mass spectrometry
Protein samples and proteolytic fragments were analyzed by ES/MS using an API 100 single-quadrupole mass spectrometer (Applied Biosystems, Firmingham, MT) equipped with an ion spray source. Samples were injected into the atmospheric pressure ion source via a syringe pump at a flow rate of 5 µl/min. Data were acquired and elaborated with the software provided by the manufacturer. Mass calibration was performed by means of multiply charged ions from a separate injection of horse heart myoglobin (Sigma; average molecular mass, 16,951.5 Da); all masses are reported as average values.
ES/MS analysis of fragment C and hemin-C
Fragment C was eluted from a Phenomenex C4 column by means of a linear gradient from 20% to 65% of acetonitrile in 0.1% aqueous TFA over 30 min; elution was monitored at 220 and 280 nm. The molecular weight of the HPLC-purified peptide was determined by ES/MS analysis.
The hemin-C complex was formed in 100 mM phosphate buffer, 1% cetyltrimethylammonium bromide (cTAB), pH 7, and then subjected to gel filtration chromatography on a PD10 prepacked column (Sephadex G25, Pharmacia, Uppsala, Sweden), eluted with 50 mM ammonium acetate, pH 7.0. The complex (10 pmol/µl) was directly injected into the ion source of the API 100 mass spectrometer. Instrumental parameters for the mass analysis were appropriately set to avoid complex dissociation in the gaseous phase.
Structural analysis
Structural analysis, including electrostatic potential surface
calculations, was performed by means of the Swiss-PdbViewer version 3.7 b2 (Guex and Peitsch, 1997
).
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RESULTS |
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Spectra and binding characteristics
The electronic spectrum of hemin in a dilute solution of 10%
DMSO-aqueous phosphate buffer at pH 7.0 exhibits the typical features
of high-spin ferric heme (Owens and O'Connor, 1988
): Soret band at 400 nm,
band at 498 nm,
band almost absent, and charge transfer
(CT) band at 620 nm. In the spectrum of the hemin-HSA adduct
recorded in the same conditions, the Soret band broadens and shifts to
404 nm, and new contributions to the spectrum are given by a detectable
band at 530 nm and a CT band at 580 nm (Monzani et al., 2001
). The
spectral features of the hemin-D complex are similar to those of
hemin-HSA but with a larger contribution by the low-spin component, as
shown by the more prominent
band at 532 nm (Fig.
1 A). By contrast, the
spectrum of the hemin-C complex appears to be totally low spin: sharp
Soret band at 412 nm and
and
bands at 534 and 566 nm,
respectively. The spectrum of this complex exhibits a pronounced pH
dependence, with a reversible shift of the Soret band to 394 nm in
basic solution (pH > 10).
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Hemin binds to fragment A essentially as a low-spin species, as
suggested by the Soret band at 414 nm and
and
bands at 534 and
566 nm, respectively, but the presence of a small fraction of high-spin
species is indicated by the CT shoulder near 630 nm (Fig. 1
A). Finally, the electronic spectrum of hemin-B resembles that of free hemin, although even in this case a slight broadening of
the Soret band at lower energy and a detectable shoulder near 530 nm,
corresponding to an
band indicate the existence of a small fraction
of low-spin form. Note that the spectra of hemin-A and especially
hemin-B obtained in our conditions are much sharper in the Soret region
than those reported previously by Hrkal et al. (1978)
, probably because
these authors studied the complexes between hemin and HSA fragments in
aqueous buffer (without addition of DMSO), where hemin is aggregated.
Because HSA itself is hardly able to destroy the aggregates and bind
monomeric hemin (Kuzelova et al., 1997
), it is likely that the same
problem occurs with HSA fragments.
Complementary information could be obtained by replacing ferric heme
with the analog Mn(III)-PPIX complex, as already reported for hemin-HSA
(Fasano et al., 2001
). At pH 7.0 (phosphate buffer 0.1 M),
Mn(III)-PPIX-C exhibits a strong absorption at 369 nm, with minor bands
at 468 and 559 nm. This pattern resembles that observed for
Mn(III)-PPIX-HSA (i.e., 370, 465, and 561 nm for
,
, and
bands, respectively) and supports the evidence for a six-coordinated
heme complex for Mn(III) as well. Although the
band is almost
unaffected by the pH value, the
band appears to be more diagnostic;
actually, a shift from 467 to 447 nm is observed for Mn(III)-PPIX-HSA
on going from pH 6 to 10. The same behavior is shown by the
band,
which is red-shifted from 556 to 571 nm. According to the proposed
mechanism, the spectral changes are the result of the displacement of a
water molecule by a tyrosyl oxygen as the sixth ligand of Mn(III)-PPIX
(Fasano et al., 2001
). In the case of Mn(III)-PPIX-C,
and
bands
undergo only modest shifts from 468 to 464 nm and from 559 to 563 nm,
respectively. These figures cannot be associated with a change of the
coordination state of the metal ion, as it occurs with hemin-C, or
ligand exchange, as it occurs with Mn(III)-PPIX-HSA, as a function of
pH. It is likely that Mn(III) is bound to two axial histidines in
Mn(III)-PPIX-C, as is Fe(III) in hemin-C, but that neither of the
histidine ligands is released in basic medium, because of the stronger
preference of Mn(III)-porphyrins for imidazole ligands with respect to
the Fe(III) analogs (Mashiko and Dolphin, 1987
). Spectral features similar to Mn(III)-PPIX-C and Mn(III)-PPIX-HSA are observed for Mn(III)-PPIX-D:
,
, and
bands occur at 369, 465, and 556 nm (pH 7.0), with an appreciable shift in basic medium, i.e., at 364, 465, and 567 nm (pH 10.5), respectively. In this case it is difficult to
draw any firm conclusion about the manganese axial ligands, although
the spectral behavior resembles more that of Mn(III)-PPIX-C than that
of Mn(III)-PPIX-HSA.
By titrating solutions of hemin in a DMSO-aqueous buffer at pH 7.0 with
the HSA fragments it has been possible to estimate the affinity of
hemin for the various polypeptides. The use of DMSO in these
experiments is convenient to prevent heme aggregation in aqueous
solution. The plots obtained from difference spectra were in fact well
behaved, and the resulting binding constants are collected in Table
1. DMSO affects the value of the binding constants only marginally. For instance, the
Kb value of hemin for HSA that we
found in DMSO-aqueous buffer 10% (v/v), (3.4 ± 0.6) × 107 M
1 (Monzani et al.,
2001
), is only slightly lower than that determined in pure buffer
through fluorescence measurements, 5 × 107
M
1 (Beaven et al., 1974
). We have also found
here that on increasing the amount of DMSO in the solution from 10% to
20% (v/v) the Kb value of hemin for
fragment C slightly decreases to (5.5 ± 0.3) × 105 M
1. The
Kb value reported for hemin-D in Table
1 is only slightly lower than that determined for hemin-HSA (Monzani et
al., 2001
). For the other fragments the affinity of hemin is
significantly lower than for the intact protein, but we note that the
values of the binding constants that we find here are significantly
larger than those reported previously by Hrkal et al. (1978)
,
particularly for hemin-A and hemin-B. Likely, this is because of the
same problem of heme aggregation in aqueous buffer solution discussed
above. The affinity of Mn(III)-PPIX for HSA fragments C and D has been measured as well. Unlike hemin, this complex shows comparable affinities for the two polypeptides, with a slightly larger value of
the binding constant in the case of fragment C (Table 1).
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The affinity of Mn(III)-PPIX for these fragments is comparable with that for HSA.
Circular dichroism spectra.
The far-UV CD spectra of HSA fragments A, B, and C were reported
previously by Hrkal et al. (1978)
. The spectra indicated significant
portions of
-helical structure, comparable with that of HSA. In the
CD spectrum of fragment D, the
-helical content is further slightly
increased (data not shown). We also investigated the effect of hemin
binding to the four HSA fragments in the CD spectra. It was found that
the binding occurs without any significant change in the far-UV CD
features of the peptides, but changes are observable in some cases in
the near-UV region, where the HSA fragments exhibit a broad negative
band near 260 nm, which is only partially resolved from the more
intense negative CD activity at higher energy. The intensity of this
aromatic CD band increases in the order of B < C < A < D.
However, upon binding of hemin to the HSA fragments, the CD activity of
the aromatic envelope remains basically unaffected for A and B, whereas
it is slightly strengthened for C and strongly enhanced in the case of
D. For hemin-C and hemin-D, additional CD activity of positive sign
occurs in the range between 300 and 350 nm. The increase of optical
activity in the aromatic region for these complexes parallels the
behavior observed for hemin binding to HSA (Monzani et al., 2001
) and
can be attributed to reduced conformational mobility of the aromatic residues of the proteins in the binding site.
The CD spectra of the hemin complexes with the four HSA fragments are particularly informative in the visible region, where the induced CD activity in the porphyrin chromophore is observed. These spectra show remarkable differences (Fig. 1 B). Hemin-D exhibits a major negative peak near 395 nm and a minor positive peak near 420 nm. For hemin-C the spectrum is different and features a single negative peak near 415 nm, practically coincident with the Soret absorption maximum. For hemin-A the CD activity is extremely weak, and for hemin-B the CD is basically absent.
The CD spectrum of hemin-C undergoes reversible changes with pH that parallel the changes observed in the electronic spectrum. On increasing the pH from 7.0 to 10.0 a progressive decrease in the negative CD peak at 415 nm and an increase of the broad CD activity of positive sign between 350 and 400 nm, featuring a maximum near 385 nm, occur. Isodichroic points are observable near 280 and 340 nm. Overall, the optical activity within the Soret band is reduced by more than 50% in the basic pH range, and the protein CD band near 260 nm becomes weaker and less defined.
Kinetics
For comparative purposes, we chose to investigate the
peroxidase-like activity of the present hemin complexes with the same group of phenolic substrates previously studied with hemin-HSA (Monzani
et al., 2001
), namely, p-cresol (1),
p-hydroxyphenyl propionic acid (2), tyramine (3), and
L- and D-tyrosine (L-4 and D-4). Given the similarity in general behavior with hemin-HSA, the same
catalytic mechanism can be assumed for the hemin complexes with HSA
fragments. This is reproduced in Scheme 1, where E is the
hemin-peptide complex, EA the active species, S
the substrate, ES the hemin-peptide-substrate
ternary complex, EAS the corresponding active
species-substrate complex, k1 the
active species formation constant, k'1
the kinetic constant for the transformation of ES into EAS, kP the
kinetic constant for product formation,
kC and k'C the kinetic constants for
decomposition of peroxide by EA and
EAS, respectively, and
KB and
K'b the substrate affinity constants for
E and EA, respectively (Monzani et al., 2001
).
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Under the assumptions described for hemin-HSA catalysis (Monzani et
al., 2001
) and operating under saturating concentration of phenolic
substrate, the rate equation for the above catalytic scheme can be
reduced to:
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Relaxometric characteristics
A 1.0 mM solution of hemin-C was investigated from the
relaxometric viewpoint as a function of pH and temperature. As expected for an S = 1/2 system, the millimolar relaxivity
r1p at 20 MHz shows a value of 0.30 s
1 mM
1, at 25°C and
pH 7.0, which is markedly smaller than that reported for hemin-HSA
(r1p = 4.8 s
1
mM
1) (Fasano et al., 2001
). This value is
further reduced by increasing the temperature, as expected for a
low-spin complex lacking coordinated water molecules. When the pH of
the hemin-C solution is increased, a marked change in the solvent water
relaxivity is observed (Fig. 2) and a
r1p value of 2.28 s
1 mM
1 is reached at
pH
10. The relaxivity change is consistent with a single
equilibrium, with a pKa value of 8.77 ± 0.07.
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Measurements of 17O-NMR linewidth as a function of temperature (data not shown) are consistent with the absence of a coordinated water molecule in the inner sphere of Fe(III) in hemin-C at any pH value. This observation gives further support to the view that a transition from a six-coordinated His2Fe center to a five-coordinated ferric heme is occurring at basic pH.
Replacement of ferric hemin by its Mn(III) analog allows us to
deal with systems endowed with higher relaxivity values.
Mn(III)-protoporphyrin complexes are reported to be often in the
high-spin state, i.e., with four unpaired electrons (Mashiko and
Dolphin, 1987
). Therefore, a direct comparison with the full-length
Mn(III)-PPIX-HSA derivative can be performed. The millimolar relaxivity
of Mn(III)-PPIX-C is almost unchanged at different pH values, except
for small fluctuations that could be attributed to conformational
transitions in the protein fragment and decrease exponentially with
temperature (Fig. 3). The complex
Mn(III)-PPIX-HSA (Fasano et al., 2001
) displays larger relaxivity
values than Mn(III)-PPIX-C at any pH. A possible explanation for both
smaller relaxivity and temperature dependence is that Mn(III), like
Fe(III), is coordinated by two His residues. To ascertain the lack of
any coordinated water molecule, 17O linewidths of
Mn(III)-PPIX-C and of diamagnetic fragment C solutions partially
enriched in H217O were measured
as a function of temperature. The extent of the paramagnetic
contribution to the transverse relaxation of the 17O nucleus is determined by the occurrence of a
scalar coupling through the Mn(III)-H2O
coordination bond (Aime et al., 1998
, 1999
). Because the two solutions
show almost identical 17O linewidths, the
occurrence of a paramagnetic contribution arising from the exchange of
a water molecule directly coordinated to Mn(III)-PPIX has to be
discarded. Nevertheless, we observe a relaxivity value that is even
smaller than that observed for Mn(III)-PPIX-HSA at pH 10, i.e., when no
directly coordinated water molecules are present. Again, the different
contribution of outer sphere water molecules close to the paramagnetic
center could be invoked to justify the observed data.
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ES/MS analysis of the hemin-C complex
The hemin-C complex, eluted from a PD10 column in 50 mM ammonium acetate, pH 7.0, at a concentration of 10 pmol/µl, was directly analyzed by ion spray mass spectrometry, producing the spectrum shown in Fig. 4. The most abundant species (component A) showed a molecular mass of 19,972.1 ± 1.0 Da, corresponding to the isolated fragment C with Met-298 in its homoserine lactone form. The molecular mass of component B was measured as 20,589.2 ± 1.2 Da, with a mass increase of ~616 Da as compared with fragment C, corresponding to the binding of a single hemin molecule. Moreover, the mass spectrum showed the occurrence of a very minor species (component C) whose molecular mass indicated the binding of two hemin molecules to fragment C. The results of this mass spectral investigation indicate that fragment C essentially binds hemin with a 1:1 stoichiometry. The presence of a major species corresponding to the unbound form of fragment C in the spectrum is very likely a result of the partial dissociation of the complex in the gaseous phase during mass spectral analysis. Finally, the occurrence of a minor component with two hemin molecules linked to the protein results from the conditions of excess hemin used in the preparation of the sample. This compound might be interpreted either in terms of the existence of two different hemin binding sites in fragment C or, more likely, by the interaction of a hemin dimer within the same site of the protein, in view of the high tendency of hemin to form dimers in aqueous solution, as demonstrated by ES/MS analysis of dilute hemin solutions (data not shown).
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Limited proteolysis and mass spectrometry
The interaction of hemin with fragment C was investigated by a
strategy that combines limited proteolysis experiments with mass
spectrometric procedures (Zappacosta et al., 1996
; Scaloni et al.,
1998
; Orrù et al., 1999
). The overall strategy is based on the
evidence that amino acid residues located within exposed and flexible
regions of the protein can be recognized by proteases, leading to a
good imprinting of the protein conformation in solution. When these
experiments are performed on both the isolated protein and a protein
complex, one may draw useful insight into conformational changes and/or
inaccessibility of protein regions due to binding of the ligand.
Limited proteolysis experiments were performed on fragment C and hemin-C by using trypsin, protease V8, subtilisin, and chymotrypsin as proteolytic probes. The protein and the complex were incubated with each protease under strictly controlled conditions to ensure the maintenance of native conformation. The extent of enzymatic hydrolysis was monitored by reverse-phase HPLC; the fragments released from the proteins were identified by ES/MS leading to the assignment of the cleavage sites.
Under the controlled conditions used for trypsin hydrolysis of fragment C (E/S 1/1000, w/w) only a few specific fragments were released; ES/MS analysis of individual fractions identified these fragments as peptides 124-190, 124-195, and 124-197. The presence of the complementary peptide pairs 191-298, 196-298, and 198-298, clearly indicates that these fragments originated from single proteolytic events that occurred on the native fragment at the level of Lys-190, Lys-195, and Arg-197. Similar results were obtained with protease V8 as indicated in Table 4. Cleavages at Glu-184 and Glu-188 generated two complementary peptide pairs of fragments whereas the proteolytic events occurring at Glu-208, Glu-227, and Glu-230 caused the excision of internal regions of the protein, because of the presence of the disulfide bridge between Cys-200 and Cys-246.
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Additional limited proteolysis experiments were then carried out by incubating fragment C with broader specificity proteases such as chymotrypsin and subtilisin (Table 4). As an example, the mass spectral analysis of the chymotryptic digestion of the protein revealed the occurrence of primary cleavage sites at Phe-211, Trp-214, and Leu-219, as inferred from the identification of the species (124-214)-(220-298) and (124-211)-(215-298), characterized by the presence of a disulfide bridge linking the two peptides.
The experimental approach described above was then used to investigate
the surface topology of hemin-C. The complex showed a generally lower
accessibility to proteases than the ligand-free HSA fragment, as
demonstrated by the higher E/S ratio needed to observe proteolytic
cleavages, thus suggesting that the interaction with hemin increased
the compactness of fragment C causing a general decrease in the rate of
hydrolysis. The preferential cleavage sites observed on the hemin-C
complex are listed in Table 4. Compared with fragment C in the apo
form, the complex exhibits a similar pattern of cleavage sites within
the
-helical region spanning residues from 174 to 205 (h10(I)-h1(II) (Carter and Ho, 1994
)), except for Glu-204, which is
now inaccessible to proteases, whereas complete protection of the
cleavage sites occurs in the region of h2(II), containing Glu-208,
Phe-211, and Trp-214.
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DISCUSSION |
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|
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Hemin binds tightly to HSA in a cleft that leaves little space for
the addition to the iron center of even small high-affinity ligands
(Monzani et al., 2001
). The spectral features of the hemin-HSA complex
are consistent with an equilibrium between a major high-spin and a
minor low-spin species. Reactivity studies using hydrogen peroxide and
exogenous substrates confirmed the limited access to the heme (Monzani
et al., 2001
). The spectroscopic and binding studies carried out on the
hemin-D complex, where the protein moiety corresponds to HSA depleted
of the C-terminal fragment A, show that this large D fragment, but not
the smaller C fragment (Hrkal et al., 1978
), contains the entire HSA
domain I proposed to act as the hemin binding site (Dockal et al.,
1999
). Recent studies indicate a contribution from its C-terminal
domain IIA, possibly with a histidine and/or a tyrosine acting as iron
axial ligands in the major high-spin species (Fasano et al., 2001
). The
electronic spectral properties and especially the induced CD pattern in
the Soret region, which reflects the interactions between the
transition moments of the porphyrin and those located in the
chromophores of the protein residues in the heme environment, are
almost identical for hemin-D (Fig. 1) and hemin-HSA (Casella et al.,
1993
). The minor differences observed for the two complexes can be
ascribed to an increased flexibility in the peptide chain surrounding
the heme in fragment D, allowing a somewhat easier approach of the
endogenous ligand to the iron center.
This view is supported by the behavior of the hemin-C complex. This
protein fragment is smaller than D, as it is further depleted of a
consistent portion of the N-terminal polypeptide chain, and contains
only part of the hemin binding site located within HSA domain I. Hemin-C appears to be totally low spin, with two imidazole groups
acting as protein axial ligands, both of which are probably different
from those present in hemin-HSA and hemin-D. The existence of some
local mobility in the peptide chain carrying the sixth ligand is shown
by the reversible change to a five-coordinated structure observed in
basic medium. The lack of formation of a low-spin, hydroxymet species
in these conditions, as it is observed, for instance, for the oxygen
carrier proteins (Antonini and Brunori, 1971
), is highly unusual in
heme-protein coordination chemistry and indicates that also for
fragment C the protein pocket hosting the heme must be tight and
basically inaccessible to small polar molecules. The opposite CD
behavior within the Soret band between the high-spin hemin C derivative
in basic medium and the corresponding high-spin components of hemin-D
and hemin-HSA complexes is a signature of the different nature of the
polypeptide chains around the heme group. A similar trend can be noted
also between the induced CD patterns of the low-spin components. The
Soret CD band of hemin-C in neutral medium (Fig. 1) is in fact opposite
to those of the corresponding low-spin forms of hemin-D and hemin-HSA
at the equilibrium in solution.
In addition to the high-affinity binding site, HSA has other heme-binding centers with lower affinity, which can be located in different portions of the polypeptide chain. As shown in the present study, a relatively strong hemin-binding site is present in fragment A and another, less strong, in fragment B. The characteristics of iron coordination in the two cases are different, six-coordinated low spin in hemin-A and five-coordinated high spin in hemin-B, but with histidine residues involved as axial ligands in both cases. However, the lack of any significant CD features for these complexes seem to indicate the existence of more than a single binding site with similar affinity for hemin in these HSA fragments. The reactivity studies performed with hydrogen peroxide and several exogenous substrates confirm that even for hemin-A and hemin-B, as well as for hemin-C and hemin-D, the approach to the heme is basically restricted to molecules of relatively small size such as the phenols investigated here, independently of the absence or presence of charges on their substituents.
Some general comments on the kinetic data are worth mentioning in the
present context, because they bear on the structural features of the
hemin complexes. The kinetic constant k'1
reflects the differences in the binding site environment of the heme
and the activation of acid-base catalysis by the polar substrates. Thus, with p-cresol, which lacks polar groups in the
substituent, k'1 is very small for all
hemin-peptide complexes carrying a low-spin iron center, whereas
somewhat larger values are observed for those complexes in which an
equilibrium between high-spin and low-spin species exist, i.e., hemin-D
(Table 2) and hemin-HSA (Monzani et al., 2001
). For substrates 2-4,
the k'1 values are generally larger than
for 1, indicative of a contribution of acid-base catalysis in the
cleavage of the peroxide O-O bond by the polar substituents of the
phenol. The
kP/k'C
values are basically controlled by the redox potential of the phenols
(Monzani et al., 1997
), and in fact the highest activities are observed
with the most easily oxidizable substrate 1 (Table 3). In general, it
is clear that only the k'1 and
kP/k'C
values exhibited by hemin-D with the various substrates are close to
those found for hemin-HSA (Monzani et al., 2001
), reflecting a similar
arrangement of the substrates near the heme in the catalytic process.
For the hemin complexes with the other HSA fragments the differences in
the heme environment dictate that also the mode of interaction of the
substrates near the heme will be different.
The structural effects determined by cleavage of the N-terminal
fragment B of HSA are of some interest because fragment C contains the
binding region, termed Sudlow's site I (Sudlow et al., 1975
), which is
located in domain IIA spanning from residue 199 through 292 of HSA (He
and Carter, 1992
). Several important ligands are believed to bind in
this region; bilirubin, warfarin, and salicylates can be accommodated,
and more than one at a time, without significant interference. We
therefore decided to investigate in more detail the properties of this
hemin-C complex, where the heme group can be exploited as a reporter
probe of the protein environment.
The pH-dependent spin state change undergone by hemin-C is
expected to dramatically affect the relaxation of solvent water protons
in the solution (Fasano et al., 2001
; Baroni et al., 2001
). The
low-spin form present in neutral solution is actually characterized by
a very low effect on the relaxation rate of water protons. The
millimolar relaxivity r1p at 20 MHz
(0.30 s
1 mM
1) is
significantly smaller than that reported for hemin-HSA (4.8 s
1 mM
1) (Fasano et al.,
2001
), even though a change in the number of mobile hydrogens may
contribute to a potential second sphere effect.
With the transition of hemin-C to the high-spin form at basic pH,
a marked increase in the solvent water relaxivity is observed (Fig. 2).
Actually, the relaxivity value in these conditions (2.28 s
1 mM
1) is larger than
those reported for most ferric oxygen carriers. In the case of sperm
whale (Physeter catodon) myoglobin, horse (Equus
caballus) myoglobin, loggerhead sea turtle (Caretta
caretta) myoglobin, and human hemoglobin (Aime et al., 1993
,
1996
), the paramagnetic contribution to the water relaxation rate is in
the range of 0.8-1.2 mM
1
s
1 at 20 MHz. Although the increase of
relaxivity with pH is clearly due to a spin-state change, the effect of
the S = 5/2 paramagnetic center needs to be amplified
by some of the residual water molecules that are still buried in the
protein core after the cleavage. Therefore, the observed value, which
is intermediate between those for ferric, high-spin oxygen carriers and
ferric, high-spin hemin-HSA, reflects both a lower reorientational
correlation time for the HSA fragment and a smaller number of water
molecules contributing to the second sphere effect (Halle et al.,
1999
).
Replacement of hemin Fe(III) with Mn(III) has a strong influence on the spectral, binding, and relaxometric properties of the protein complexes. Mn(III)-PPIX binds less strongly than hemin to both HSA and fragment D but more strongly than hemin to fragment C. This difference can be attributed to the easier formation of the metal complex with bis-histidine ligation in fragment C. The larger paramagnetism of Mn(III)-PPIX-C produces higher relaxivity effects of water protons compared with its Fe(III) analog, and in addition, for the Mn(III) derivative both the spectral features and relaxivity effects are basically unchanged with pH, indicating that the polypeptide chain carrying the sixth axial ligand is more conformationally rigid than in hemin-C.
Fig. 5 shows a ribbon diagram of HSA
fragment C as obtained from the x-ray coordinates of HSA (Protein Data
Bank code 1bm0) (Sugio et al., 1999
). The main feature is the long
interdomain helix (namely, h10(I)-h1(II) (Peters, 1996
), residues
177-205), which is docked to helices h8(I) and h9(I) to form a
three-helix bundle capped by helix h7(I). This motif is orientated
perpendicular to the assembly formed by helices h2(II) to h6(II).
Obviously, the structural model obtained by simply cutting the atomic
coordinates of the fragment from the atomic coordinates of the whole
protein is far from being representative of the actual solution
structure of fragment C. Moreover, HSA fragments are expected to
possess an intrinsic conformational flexibility, because many contacts have been removed.
|
The results of the spectroscopic, reactivity, and relaxometric studies
can thus be combined with proteolysis/MS experiments to forward a
suggestion for a potential heme-binding site in the fragment C model.
Limited proteolysis data performed on the ligand-free fragment C
indicate that preferential proteolytic sites are gathered within
helices h10(I)-h1II) and h2(II). A quite similar distribution of
cleavage sites was observed within the
-helical h10(I)-h1(II) region
for hemin-C, with only Gln-204 being inaccessible in the complex. This
finding would suggest that h10(I)-h1(II) is actually solvent exposed in
hemin-C. On the contrary, differences were detected in the region of
helix h2(II), where Glu-208, Phe-211, and Trp-214 were completely
protected from proteases in the complex (Table 4). These data suggest
that the region encompassing residues Glu-208 to Trp-214 is involved in
the interaction with hemin and, therefore, is protected from the
activity of proteases. This helix constitutes a definitely hydrophobic
stretch (in black in Fig. 5) and could be indicated as the docking site
for hemin to fragment C. If we compare the binding site characteristics
of the heme in HSA and fragment D with those in fragment C we note that
cyanogen bromide cleavage of the N-terminal HSA portion (B) forces
hemin to bind in a protein cleft that is different but just adjacent to
that used by HSA and fragment D. This cleft is lined by residues Glu-208, Phe-211, and Trp-214 and constitutes the subpocket in which
the benzyl moiety of warfarin is bound, predominantly through hydrophobic contacts (Petitpas et al., 2001
). It should be emphasized that the imidazole ring of His-242 (black sticks in Fig. 5) is in close
proximity to the hydrophobic pocket defined by these residues and might
then constitute the fifth axial ligand to the iron atom. Tyr-148 seems
to be accessible to Fe(III), but the different orientation of the
porphyrin caused by the new stabilizing contacts makes coordination of
this residue unsuitable. A different ligand, with stronger ligand
field, occupies the sixth iron coordination position in hemin-C, very
likely a second histidine residue. This residue could be His-288 (see
Fig. 5), which belongs to a structural element lacking stabilizing
contacts with the part of the polypeptide chain that has been removed
by the cyanogen bromide cleavage; thus it could rearrange to form the
low-spin bis-histidine complex present in this complex. A large
flexibility of this region is also suggested by the conformational
transition undergone by this complex from neutral to basic pH.
An analysis of the charge distribution indicates that these structural components have opposite charge, with residues belonging to domain I endowed with a positive charge and helices h3(II) to h6(II) with a large negative potential. His-242 is located within the crevice formed by the structural elements with opposite charge distribution, i.e., in a region where the electrostatic potential is lower. Basic residues such as Lys-195 and Arg-218 (see Fig. 5) should contribute to the hemin docking by providing salt bridges to hemin propionates.
In conclusion, the picture emerging from the present comparative
studies on HSA fragments indicates that hemin binds to fragment C in
the region usually indicated as Sudlow's site I, which is located in
proximity to the site where hemin binds to both fragment D and
full-length HSA. This is in keeping with the observation that the
binding clefts for hemin and warfarin in HSA are functionally and
spectroscopically linked (Baroni et al., 2001
).
Note that after completion of this work, a structural description of
the heme binding site in HSA has been reported at the atomic level
(Wardell et al., 2002
).
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ACKNOWLEDGMENTS |
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This work was supported by grants of Projetto di Rilevante Interesse Nazionale of the Italian Ministero Università e Ricerca Scientifica e Technologica.
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FOOTNOTES |
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Address reprint requests to Dr. Luigi Casella, Dipartimento di Chimica Generale, Via Taramelli 12, 27100 Pavia, Italy. Tel.: 39-0382-507331; Fax: 39-0382-528544; E-mail: bioinorg{at}unipv.it.
Submitted March 5, 2002, and accepted for publication June 7, 2002.
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REFERENCES |
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Biophys J, October 2002, p. 2248-2258, Vol. 83, No. 4
© 2002 by the Biophysical Society 0006-3495/02/10/2248/11 $2.00
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