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Biophys J, December 2002, p. 3336-3350, Vol. 83, No. 6

Solid-State 19F-NMR Analysis of 19F-Labeled Tryptophan in Gramicidin A in Oriented Membranes

Stephan L. Grage,* Junfeng Wang,dagger Timothy A. Cross,dagger and Anne S. Ulrich*

 *Institute of Molecular Biology, 07745 Jena, Germany; and  dagger National High Magnetic Field Laboratory, Tallahassee, Florida 32310 USA


    ABSTRACT
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

The response of membrane-associated peptides toward the lipid environment or other binding partners can be monitored by solid-state NMR of suitably labeled side chains. Tryptophan is a prominent amino acid in transmembrane helices, and its 19F-labeled analogues are generally biocompatible and cause little structural perturbation. Hence, we use 5F-Trp as a highly sensitive NMR probe to monitor the conformation and dynamics of the indole ring. To establish this 19F-NMR strategy, gramicidin A was labeled with 5F-Trp in position 13 or 15, whose chi 1/chi 2 torsion angles are known from previous 2H-NMR studies. First, the alignment of the 19F chemical shift anisotropy tensor within the membrane was deduced by lineshape analysis of oriented samples. Next, the three principal axes of the 19F chemical shift anisotropy tensor were assigned within the molecular frame of the indole ring. Finally, determination of chi 1/chi 2 for 5F-Trp in the lipid gel phase showed that the side chain alignment differs by up to 20° from its known conformation in the liquid crystalline state. The sensitivity gain of 19F-NMR and the reduction in the amount of material was at least 10-fold compared with previous 2H-NMR studies on the same system and 100-fold compared with 15N-NMR.


    INTRODUCTION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

Because the three-dimensional structure of most membrane-bound proteins is not yet accessible, it is often useful to focus on specific molecular segments. For example, the conformation of a prosthetic group or ligand may bear functionally relevant information on a membrane-associated receptor, and the behavior of a protein side chain may yield valuable insight about its immersion in the membrane or its interaction with other binding partners. In many cases a substantial response in the conformation or motional freedom of certain side chains is expected, for example when an amphiphilic peptide associates peripherally with the lipid bilayer, when lateral protein aggregates are formed in the membrane, or when the lipid phase state is altered. These effects are readily monitored, for example, by analyzing the intrinsic fluorescence of aromatic side chains. Tryptophan (Trp) in particular is a sensitive reporter of local dynamics, hydrophobicity, and anisotropic interactions of membrane-associated proteins. For example, Raman studies and fluorescence spectroscopy have been used to monitor the alignment and environmental response of Trp side chains in gramicidin A (Scarlata, 1988, 1991; Takeuchi et al., 1990; Maruyama and Takeuchi, 1998). In other membrane proteins, Trp fluorescence spectra have been correlated with different microenvironments (Reshetnyak and Burnstein, 2001; Reshetnyak et al., 2001), and multiexponential decays have been interpreted in terms of discrete rotamer populations (Clayton and Sawyer, 1999a,b). However, the information content of such fluorescence analysis is still under debate (Ladokhin and White, 2001), as it is not straightforward to describe the absolute alignment of the Trp side chain nor to characterize its axes of motional averaging.

The only direct approach to observe the structure of a side chain in a noncrystalline membrane protein or fiber is afforded by solid-state NMR spectroscopy (Watts et al., 1995; Opella 1997; Marassi and Opella, 1998; Fu and Cross, 1999). The detailed alignment and motional averaging of specific side chains have been addressed, for example, in gramicidin A (Killian, 1992; Hu et al., 1993, 1995; Koeppe et al., 1994, 1995; Hu and Cross, 1995; Ketchem et al., 1997), bacteriorhodopsin (Spohn et al., 1983; Keniry et al., 1984), various other peripheral and transmembrane protein segments (Koenig et al., 1999; Sharpe and Grant, 2000; Sharpe et al., 2000), and silk fibers (Nicholson et al., 1993; Asakura et al., 1997; Demura et al., 1998; Kameda et al., 1999a,b). To observe a specific protein side chain by solid-state NMR, most previous studies have relied on selective isotope labeling with 2H, 13C, or 15N, which are nonperturbing but which have an inherently low sensitivity compared with 1H-NMR. To improve sensitivity, 19F has been successfully used as an alternative probe in proteins, both in liquid state NMR (Gerig, 1994, 1998; Danielson and Falke, 1996; Luck et al., 1996; Sun et al., 1996; Lau and Gerig, 1997; Bouchard et al., 1998; Zemsky et al., 1999; Luck and Johnson, 2000) and solid-state NMR (McDowell et al., 1993, 1996; Feeney et al., 1996; Klug et al., 1997; Goetz et al., 1999; Ulrich 2000; Grage et al., 2001; Murphy et al., 2001; Salgado et al., 2002). In addition to its high sensitivity, which promises to reduce acquisition times theoretically by two to three orders of magnitude, 19F possesses a wide dispersion of isotropic chemical shifts as well as a large chemical shift anisotropy (CSA), which renders it a highly informative reporter of local structure (Ulrich, 2000).

Having recently demonstrated the use of 19F-NMR to determine the overall alignment and motional averaging of a cyclic peptide in a membrane (Grage et al., 2001; Salgado et al., 2002), here we will illustrate the structure analysis of a 19F-labeled protein side chain. The most relevant candidate for this kind of investigation is 19F-labeled tryptophan, besides other aromatic and aliphatic amino acids. Even though the risk of inducing a small structural or electronic perturbation cannot be completely avoided, hydrophobic side chains with a single 19F-substituent at the periphery are usually compatible with the native protein structure. Fluorine-labeled Trp, Phe, and Leu are indeed the most prominent and least perturbing amino acids used for 19F-NMR on proteins, as they can be readily incorporated biosynthetically by supplementing the growth medium of most expression systems (McDowell et al., 1993, 1996; Gerig 1994; Danielson and Falke, 1996; Feeney et al., 1996; Luck et al., 1996; Sun et al., 1996; Klug et al., 1997; Lau and Gerig, 1997; Bouchard et al., 1998; Goetz et al., 1999). Many studies have shown that 5F-Trp, 6F-Trp, 4F-Phe, and omega F-Leu hardly affect the surrounding protein structure (Feeney et al., 1996; Sun et al., 1996), and vice versa that the conformation of these labeled side chains hardly differs from that of the unlabeled system (Lau and Gerig, 1997; Cotten, 1998; Cotten et al., 1999).

There are several biophysical reasons why a more detailed characterization especially of Trp in membrane-associated peptides and proteins is generally desirable. Due to its amphiphilic character, Trp plays a distinguished role both in integral membrane proteins as well as in peripheral ones. In transmembrane helices Trp frequently occurs near the polar-apolar interface, where it helps to anchor the helix at an appropriate depth within the lipid bilayer (Schiffer et al., 1992; de Planque et al., 1998; Wallace and Janes, 1999; Morein et al., 2000; Rinia et al., 2000). In ion channels the dipole moments of indole rings are often aligned toward the channel center to guide the entry of ions (Hu et al., 1993, 1995; Avdonin and Hoshi, 2001; Townsley et al., 2001), and Trp may also stabilize the channel structure (Cotten et al., 1997; Okada et al., 2001). Another role of Trp has been attributed to its partial membrane immersion, which mediates the peripheral adhesion of amphiphilic peptides to membranes, as in the case of cecropins (Oh et al., 2000), indolicins (Hancock and Diamond, 2000; Friedrich et al., 2001), and annexins (Hofmann et al., 2000). In the latter example, Trp has also been suggested to modulate the formation of two-dimensional protein arrays on the membrane surface (Pigault et al., 1999). Trp side chains have been further proposed to interact with certain lipids (Killian, 1992; Mousson et al., 2001) or to facilitate the lateral association of transmembrane proteins. Hence, it is of fundamental interest to be able to monitor directly the conformation and motional behavior of this special amino acid in membrane proteins by solid-state NMR, even if this involves the observation of a nonnatural 19F-substituent on the indole ring.

The alignment of a 19F-labeled Trp side chain with respect to the lipid bilayer surface will be determined here by analyzing the 19F CSA tensor in a uniaxially oriented membrane sample, in a similar way as it has been previously done by 2H-, 13C-, and 15N-NMR (Spohn et al., 1983; Keniry et al., 1984; Killian 1992; Hu et al., 1993, 1995; Nicholson et al., 1993; Koeppe et al., 1994, 1995; Hu and Cross, 1995; Lee et al., 1995; Asakura et al., 1997; Demura et al., 1998; Jude et al., 1999; Kameda et al., 1999a,b; Koenig et al., 1999; Koeppe et al., 2000; Sharpe and Grant, 2000; Sharpe et al., 2000). We note that 19F possesses a highly asymmetric CSA tensor, in contrast to the axially symmetric 1H-15N dipolar coupling or the nearly axially symmetric amide 15N CSA and 2H quadrupolar tensors. Therefore, the 19F CSA tensor can be used to fully describe the three-dimensional alignment of the labeled segment with respect to the membrane normal in terms of two Euler angles, rather than providing only a single angular restraint. To extract both Euler angles, the NMR analysis requires a concerted lineshape analysis of the sample at several different tilt angles (Ulrich et al., 1992, 1994, 1995; Ulrich and Watts, 1993, 1994; Ulrich and Grage, 1998), or alternatively magic angle oriented sample spinning can be used (Glaubitz and Watts, 1998; Glaubitz et al., 1999, 2000). In principle, all tools for the analysis of 19F-labels in membranes are at hand, but there remains an open question concerning 1) the principal axis values in situ and 2) the alignment of the CSA tensor within the molecular frame. This fundamental information about 19F CSA tensors is not yet available for any fluorinated amino acid. Anisotropic values (but not the alignments) of 19F chemical shift tensors have been reported for various systems including 5F-Trp, but not yet in the framework of any peptide or protein (Yim and Gilson, 1968; Mehring et al., 1971; Luck et al., 1996). For a few aromatic systems the respective principal tensor axes have been assigned to the molecular frame, but not yet for the indole ring of Trp (Snyder, 1965; Nehring and Saupe, 1970; Griffin et al., 1973; Halstead et al., 1975; Mehring 1983; Hiyama et al., 1986).

To first obtain the fundamental CSA parameters for 5F-Trp and then to tackle a biologically relevant question by 19F-NMR, we have investigated here a particular structural aspect of the antimicrobial peptide gramicidin A (gA), which has attracted much attention over the past decade. The pentadecapeptide (HCO-Val-Gly-Ala-DLeu-Ala-DVal-Val-DVal-Trp-DLeu-Trp-DLeu-Trp-DLeu-Trp-NHCH2CH2OH) is known to form dimeric ion channels in membranes (Harold and Baarda, 1967; Arseniev et al., 1985; Killian, 1992). The rim of the right-handed beta -helix is lined with four tryptophans, which play an important structural role in the membrane-immersion of the peptide (Killian, 1992; Hu et al., 1993; Pascal and Cross, 1993; Cotten et al., 1997) and which are functionally relevant for the conductivity and selectivity of the ion channel (Becker et al., 1991; Hu and Cross, 1995; Hu et al., 1995; Busath et al., 1998). The structure of the peptide in liquid crystalline membranes has been fully resolved by previous 2H-, 13C-, and 15N-NMR studies, revealing the detailed conformation and dynamics of the Trp side chains (Macdonald and Seelig, 1988; Ketchem et al., 1993, 1997; Koeppe et al., 1994, 2000; Cross et al., 1999). In recent functional studies of gA, 19F-substituents were placed in various positions of the indole rings as a tool to modify their electric dipole moments, which provided valuable insights into the mechanism of ion transport (Anderson et al., 1998, 2001; Busath et al., 1998; Dorigo et al., 1999; Phillips et al., 1999; Thompson et al., 2001). Despite some appreciable electric dipole effects, the structural impact of the fluorine substitutions on the side chain torsion angles of Trp was found to be rather small, changing chi 1 by less than 5°, and chi 2 by less than 12° (Cotten 1998; Cotten et al., 1999) (for definitions of chi 1/chi 2, see Fig. 1). Given this reliable information on the structure of native gA and its 19F-labeled analogues, here we have carried out the first direct 19F-NMR analysis of 5F-Trp in a membrane-associated peptide. That way, it was not only possible to establish the NMR approach and demonstrate its high sensitivity, but also to obtain new structural data on the side chain response in gA toward different phase states of the lipid bilayer.



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FIGURE 1   Alignment of the 19F CSA tensor in the magnetic field B0 is described by a series of Euler rotations of alpha , beta , and gamma , which are used to transform the tensor from one frame of reference to the next, namely from the principal axis system (P) to the indole ring system (I), to the helix axis system (H), to the macroscopically oriented sample (S), and finally to the laboratory frame (L).


    MATERIALS AND METHODS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

Samples

Three types of gramicidin A peptides were examined in this study: labeled at position 13 with 5F-Trp ["F13-gA"], at position 13 with 5F-(2,4,6,7)2H-Trp ["F(d)13-gA"], or at position 15 with 5F-(2,4,6,7)2H-Trp ["F(d)15-gA"]. See Fig. 1 for the numbering of the indole ring. The fluorinated peptides were synthesized by standard solid phase methods as described previously (Fields et al., 1988, 1989; Cotten et al., 1999). The peptides were incorporated in dimyristoylphosphatidylcholine (DMPC) purchased from Avanti Polar Lipids (Alabaster, AL) and used without further purification. Nonoriented powder samples of F(d)13-gA and F(d)15-gA were prepared by codissolving the peptide and DMPC at a peptide:lipid molar ratio of 1:10 in benzene with 5 vol% ethanol. The solvent was removed under vacuum, and the mixture was hydrated to 50% (weight/total weight) by adding high-performance liquid chromatography-grade water, as previously described (Cotten et al., 1999).

For the oriented samples, DMPC and gA at a 10:1 ratio (using either 9 mg F(d)13-gA, or 2 mg of F(d)15-gA or F13-gA) were cosolubilized in 450 µl of 95:5 vol/vol mixture of benzene/ethanol. The solution was distributed over 15 glass slides of 8 mm × 20 mm × 0.06-mm (Marienfeld, Lauda-Königshofen, Germany). After evaporating the solvent under N2, the slides were dried under vacuum overnight. Samples containing F(d)13-gA and F(d)15-gA were hydrated to 50% by adding high-performance liquid chromatography-grade water to each slide with a micropipette and then stacked. The stack was covered with an additional slide, sealed with epoxide glue along the edges to prevent the sample from drying, and incubated for several days at 45°C. Alternatively, the glass slides with F13-gA were stacked first, then incubated at 98% humidity for 48 h until the sample became transparent, and finally wrapped in parafilm. Both approaches yielded equivalent results in terms of the peptide structure and mobility, although the latter sample had a significantly better mosaic spread.

Instrumentation

Solid-state 19F-NMR spectra were acquired on a 500-MHz Varian Unity Inova spectrometer (19F frequency at 470.3 MHz). A double-tuned (1H/19F) flat-coil probe (2.5 mm × 9 mm) from Doty Scientific (Columbia, SC) was used. The orientation of the flat coil could be adjusted with a goniometer to within 2°. The 19F 90°-pulse length was 2.5 µs, and 1H-decoupling of up to 40 kHz was applied. A Hahn echo with a 25-µs delay was used to acquire free induction decays of 5120 points (zero filled to 16,384) with a 2-µs dwell time over 10 ms. The recycle time was 3 to 4 s, and 5,000 to 10,000 scans were acquired, depending on the phase state and linewidth of the sample. A 100-Hz linebroadening was applied, and all chemical shift values were referenced with respect to CFCl3 at 25°C. T2-relaxation times were measured with an echo sequence over 10 suitably incremented delay times.

The degree of sample orientation was assessed by 31P-NMR using a homebuilt flat-coil 1H/X probe. In the first set of oriented samples containing F(d)13-gA and F(d)15-gA, ~50% of the material were well oriented, whereas the sample prepared later from F13-gA was oriented to 90%. An appropriate powder contribution was thus subtracted from the corresponding 19F-NMR spectra, but this procedure had no impact on the analysis because the resulting lineshapes of analogous samples were very similar (despite the different amounts of powder contribution subtracted). The residual 19F-background signal of the NMR probe was also subtracted. Because most spectra contained a small signal of trifluoroacetic acid at -76 ppm, this narrow peak was replaced in the oriented spectra by a straight connection between -69 and -81 ppm to avoid any misfit in the lineshape simulations.

Lineshape simulations

The experimental 19F spectra from oriented samples aligned at a tilt angle theta  in the magnetic field were compared with lineshapes calculated numerically by a C2+ program. This strategy is illustrated in Fig. 1, where the chemical shift anisotropy tensor is successively rotated from one frame of reference to the next using three angles alpha , beta , and gamma  each. The starting point in the lineshape simulations was the CSA tensor delta P in the principal axis frame (P) for which the three principal axis values were obtained from the 19F-NMR spectrum of lyophilized gA. First, the tensor was transferred via the indole ring frame (I) into the helix frame (H) with the z axis along the gA axis. Subsequently, the tensor was rotated into a sample frame (S) that is fixed with its z axis along the glass plate normal, as the helix axis may deviate from the sample normal due to "mosaic spread." Finally, the tensor was transferred into the laboratory frame (L) to account for the macroscopic sample tilt theta . The resulting resonance frequency is then given by the (delta L)33-component of the tensor delta L in the laboratory frame. For the complete spectrum, however, it has to be considered that the membrane environment defines only the gramicidin helix axis direction but not its azimuthal polarity. This, in addition to the mosaic spread, was taken into account by averaging over the three Euler angles alpha HS, beta HS, and gamma HS, which transform the coordinate system H into S. The lineshapes were constructed from 106 randomly chosen Euler angle sets alpha HS, beta HS, and gamma HS with uniformly distributed alpha HS and gamma HS. The helix slant beta HS was varied according to a Gaussian distribution p(beta HS) ~ sin(beta HS) exp[-beta HS2/(2sigma 2)] around beta HS = 0 with a standard deviation of sigma  = 12°, called the mosaic spread. Additional Lorentzian linebroadening of 1 to 2.5 kHz was applied to the simulated spectra to account for the intrinsic linewidth, choosing always the same value within any one tilt series.

Our discussion of the spatial relationship between the 19F CSA tensor and tryptophan is based on the gramicidin A structure 1MAG.pdb, and on the indole geometry from the Sybyl database (Sybyl 6.4, Tripos Inc., St. Louis, MO), which is equivalent to the data used in the 2H-NMR study of gA by Hu et al. (Hu and Cross, 1995; Hu et al., 1995). A different coordinate set for the Trp geometry had been used in the previous 2H-NMR analysis on 19F-substituted gA by Cotten et al. (Cotten, 1998; Cotten et al., 1999). Therefore, those 2H-NMR data were re-evaluated here with the same indole geometry as Hu et al. to enable an unbiased comparison with our own 19F-NMR data. It is important to realize that the precision at which the indole geometry can be derived from the literature or any database is rather limited and translates into an uncertainty of ~5° in the chi 1/chi 2 rotamer angles of the side chain.

Root of mean square deviation analysis

The spectral lineshapes of a tilt series were simulated from two different points of view, as there are two possible ways of describing the 19F CSA tensor orientation with respect to the sample fixed frame (S). The first, ab initio approach makes use of two Euler angles alpha PS and beta PS, which define the principal axis system of the CSA (P) with respect to the sample S. Alternatively, in the in situ approach, we start off with the known backbone structure of gramicidin A, and then the two rotamer angles chi 1 and chi 2 are used to describe the torsions around the Calpha -Cbeta and Cbeta -Cgamma bonds of Trp, respectively (for definition of chi 1 and chi 2, see International Union of Pure and Applied Chemistry and International Union of Biochemistry and Molecular Biology 1970). These two approaches are equivalent in defining the absolute CSA tensor orientation in S, and they can be readily interconverted, provided that the alignment of the tensor with respect to the indole geometry is known. Because this relationship has not yet been characterized for 19F-labeled Trp, here we will deduce the CSA tensor alignment and axis assignment by comparing our 19F-NMR ab initio data set with the previous 2H-NMR in situ data set. For an unbiased representation of each set of NMR spectra, it is necessary to carry out a systematic conformational search and to validate the experimental data in an objective way. This was done by calculating the root mean square deviation (rmsd) between the simulated lineshapes and the experimental spectra of a complete tilt series, either as a function of alpha PS and beta PS (ab initio), or as a function of chi 1 and chi 2 (in situ):
<UP>rmsd</UP>=<RAD><RCD><LIM><OP>∑</OP><LL>i</LL></LIM><LIM><OP>∑</OP><LL>k</LL></LIM>(s<SUB><UP>exp i,k</UP></SUB>−s<SUB><UP>mod i,k</UP></SUB>)<SUP>2</SUP>/N</RCD></RAD>
Here, sexp i,k and smod i,k are the amplitudes of the normalized experimental or model spectrum, respectively, where i denotes the sum over the different spectra obtained at different sample tilts in the magnetic field, k denotes the sum over all points of a spectrum, and N is the number of spectra within a tilt series.

Minima of the rmsd were calculated to obtain the best-fit ab initio tensor orientation and the best in situ side chain conformation, respectively. It should be noted that the combination of several lineshapes from a tilt series to yield a single rmsd value is not unproblematic, because there are various ways how their respective contributions could be weighted in view of their very different spectral widths. Nevertheless, we found that the rmsd minima obtained with a linear weighting procedure correspond to excellent fits of simulated and experimental lineshapes. Any other, more elaborate weighting models did not move the minima by more than 5°, hence our rmsd analysis leads to reliable results. Another potential source of error in the rmsd plots concerns the accuracy in the chemical shift determination, which is critical when the peak position in the 0° tilt spectrum lies close to the delta 22 CSA tensor value, as it happens to be the case here. In this situation, an error of 1 ppm would translate into a shift of the rmsd minima of ~3° in beta PS, hence it is important to care about good referencing in the oriented samples (R. W. Glaser and A. S. Ulrich, submitted; R. Ulrich, R. W. Glaser, and A. S. Ulrich, submitted).


    RESULTS
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

The anisotropy of the 19F chemical shift is characterized by a tensor with the three principal values delta 11, delta 22, and delta 33. Our aim is to determine the two unique angles alpha  and beta , which describe the CSA alignment with respect to the lipid bilayer, as illustrated in Fig. 1. From these angles, we will then be able to deduce the conformation of the 5F-Trp side chain (i.e., chi 1 and chi 2 values) to which this CSA tensor is attached. First, we measure the three principal CSA values of 5F-Trp from nonoriented bilayer samples. Using aligned samples, contributions of 1H-coupling, T2-relaxation, and mosaic spread to the 19F linewidth are assessed, and spectra of protonated and deuterated 5F-Trp samples are compared. Second, a tilted series of orientation-dependent spectra of uniaxially aligned samples is analyzed by lineshape simulation to determine the alignment of the 19F CSA tensor with respect to the membrane. Next, we assign the three principal CSA axes with the aid of the known coordinates of gA. On this basis, we are able to position the CSA tensor into the molecular frame of the indole ring. Finally, the side chain conformation of Trp in the gel phase bilayer can be determined and compared with its alignment known from 2H-NMR studies of the liquid crystalline phase. A special emphasis of this work concerns the behavior of gA in the gel state of the membrane where the peptide is immobilized. Even though structural studies are rarely performed in the gel state (Scarlata, 1988, 1991; Takeuchi et al., 1990; Nicholson et al., 1991; Maruyama and Takeuchi, 1998), the general approach presented here will be relevant for any large membrane protein that does not undergo fast long-axial rotation in the lipid bilayer.

Powder samples

Fig. 2 shows the 19F-NMR spectra for non-oriented samples of F(d)13-gA (a, b) and F(d)15-gA (c, d), incorporated into DMPC at a peptide:lipid ratio of 1:10. When acquired at 35°C, i.e., above the lipid phase transition temperature, the powder lineshapes (a, c) reflect axially symmetric CSA tensors. Both span the range from -120.0 ppm to -139.0 ppm, as estimated by a lineshape fitting procedure that takes linebroadening into account. This axial symmetry reflects the expected fast reorientation of the peptide about the membrane normal at 35°C (Macdonald and Seelig, 1988; Lee et al., 1993). Motional averaging, however, obscures the structural information contained in the anisotropy of the three distinct principal axes of the 19F CSA tensor. Therefore, to apply the proposed NMR strategy to its full potential, it is important to prevent any global molecular rotation. The corresponding 19F-NMR spectra at 5°C, where the peptide is immobilized in the gel phase of the lipid, are displayed in Fig. 2, b and d. These lineshapes now represent nonaxially symmetric CSA tensors, whose principal axis values delta 11, delta 22, and delta 33 are extracted from the two edges and the maximum (Nicholson et al., 1991). Due to difficulties in chemical shift referencing in a flat-coil probe (R. W. Glaser and A. S. Ulrich, submitted; R. Ulrich, R. W. Glaser, and A. S. Ulrich, submitted), absolute errors are on the order of ±2 ppm, but the relative values are self-consistent within ±1 ppm. For the label in position 13, the principal axis values are delta 11 = -80.0 ppm, delta 22 = -141.5 ppm, and delta 33 = -156.5 ppm, and for position 15 they are delta 11 = -81.0 ppm, delta 22 = -141.0 ppm, and delta 33 = -157.5 ppm. The isotropic chemical shifts are calculated to be delta iso = -126.0 for F(d)13-gA, and delta iso = -126.5 for F(d)15-gA, and the total width of both respective tensors is 76.5 ppm. The CSA width of the membrane-embedded peptide at 5°C is smaller than that of lyophilized gramicidin A (delta 11 - delta 33 = 83 ppm) and of polycrystalline 5F-Trp (87 ppm) (U. Dürr, S. L. Grage, and A. S. Ulrich, manuscript in preparation). This suggests that the gel phase lipid environment provides a limited degree of librational freedom for the Trp side chains, which are nevertheless subject to considerable intramolecular steric hindrance by neighboring amino acids (Nicholson et al., 1991; Koeppe et al., 2000). Upon cooling the polycrystalline amino acid down to -60°C, we observed a further increase in its CSA by ~10 ppm, approaching the rigid powder limit (data not shown). This trend compares well with the reported CSA widths of 15N in the amide groups of gramicidin A from which the amplitudes of librational motion in the backbone have been estimated as ±10° at -60°C and up to ±20° in the lipid gel phase (Nicholson et al., 1991; Lazo et al., 1993, 1995). For the Trp side chains Hu et al. (1995) have reported librational amplitudes of ~30° in the liquid crystalline state. In the present study, however, all three 19F CSA tensor values are affected by librational motion in a complex way, hence we do not attempt to attribute the observed averaging to any particular torsional axis nor to define an order parameter.



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FIGURE 2   Solid-state 19F-NMR powder spectra of gramicidin A labeled with 5F-Trp in either position 13 (a and b) or 15 (c and d), embedded in fully hydrated DMPC dispersions. At 35°C (a and c) the 1H-decoupled powder spectra reflect an axially symmetric CSA tensor, which is motionally averaged by fast reorientation of the polypeptide about the membrane normal. This global motion ceases below the phase transition temperature (b and d), as nonaxially symmetric powder lineshapes are observed at 5°C, revealing the three principal values of the 19F CSA tensor.

Oriented samples

When a uniaxially oriented sample is aligned horizontally, i.e., with its axis parallel to the static magnetic field direction (theta  = 0°), all labeled sites have the same orientation with respect to this direction. One specific frequency is selected from the powder spectrum, resulting in a single narrow peak. The 19F-NMR spectra obtained this way from gA labeled in position 13 are shown in Fig. 3. The lineshapes are compared with and without 1H-decoupling, both for protonated (a) and deuterated (b) 5F-Trp side chains, and each panel displays data for the two different temperatures of 35°C (liquid crystalline bilayer) and 5°C (gel phase). We note that the lipid phase transition has only a small effect on the resonance position (Fig. 3, a and b), suggesting that the Trp conformation is quite similar in both the fluid phase and the gel state environment. If the only consequence of lipid chain melting on gA were the onset of long-axial rotation, then the signal would remain exactly at the same frequency. However, there is a small but significant shift of 2.7 ppm toward the isotropic value in going from 5 to 35°C, which was confirmed by compiling 19F-NMR data also from other oriented samples of gA (not shown). This small shift may thus be attributed to a slight local conformational change or to some additional motional averaging. It is likely that a slight wobble of the gA axis plus increased librational freedom of the Trp side chains is facilitated in the liquid crystalline phase of the lipid. In a simplistic approach, such motional averaging may be described by an isotropic order parameter Smol. Its value can be estimated from the ratio of the observed CSA width of 19 ppm at 35°C (Fig. 2, a and c) over the theoretically expected CSA width {19 ppm + 3/2 × 2.7 ppm}, provided there is no conformational change. The resulting value of Smol approx  0.8 appears reasonable for the side chain of a transmembrane peptide, but it must only be regarded as a rough indicator of the extent of motional averaging. It will be shown below that the Trp torsion angles indeed respond slightly to the lipid phase state, hence it is not possible here to discriminate between motional effects and conformational changes.



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FIGURE 3   19F-NMR spectra (a and b) of macroscopically oriented samples with gA labeled in position 13 were acquired at temperatures above and below the lipid phase transition temperature, with and without 1H-decoupling (B1 = 40 kHz). The bottom two panels (c and d) depict the 19F-NMR linewidths as a function of decoupling field strength. The two different temperatures (c) are compared, as well as nondeuterated and deuterated side chains (d) (, protonated 5F-Trp at 5°C; black-lozenge , protonated 5F-Trp at 35°C; open circle , deuterated 5F-Trp at 5°C).

The observed linewidths (at half height) of the oriented spectra are plotted in Fig. 3, c and d as a function of the 1H-decoupling field strength B1. Fig. 3 c illustrates the line-narrowing effect of motional averaging due to global peptide rotation in the liquid crystalline phase, and Fig. 3 d compares the linewidths of protonated and deuterated indole rings at 5°C. 1H-decoupling is obviously essential for achieving optimal resolution. The nondecoupled linewidths of ~11 kHz start to decrease significantly when rather low decoupling power (20 kHz B1 field strength) is applied. Above 40 kHz of 1H-decoupling field strength, however, the residual 19F-NMR linewidths of ~2 kHz in the fluid phase and 4 kHz in the gel state cannot be further improved. These large line widths cannot be attributed to transverse relaxation, because the measured T2 relaxation times yield an intrinsic line width of 1/(pi T2approx  500 Hz at 35°C, and 1/(pi T2approx  800 Hz at 5°C, respectively. Likewise, we exclude susceptibility effects as a primary contribution, because in other 19F-NMR studies of oriented samples we obtained line widths between 800 and 1500 Hz using the same setup (Salgado et al., 2002; R. W. Glaser and A. S. Ulrich, submitted). The dominant contribution to the considerable linewidths of gA in our samples stems from the orientational disorder of the peptide, which was estimated to be ~12° by lineshape simulation in both the gel state and the fluid phase. This large mosaic spread does not compare favorably with published data on gA aligned in liquid crystalline bilayers, where values as little as 0.3° have been reported (Hu and Cross, 1995; Hu et al., 1995). In fact, previous 2H-NMR studies of the same 19F-labeled compounds had also noted a significant increase in the orientational heterogeneity of the fluorinated side chains compared with the 19F-free analogues (Cotten et al., 1999). Moreover, working in the gel phase seems to reduce the sample quality, as 15N-NMR studies on gA at low temperature also encountered a significant linebroadening that could not be explained in terms of homogeneous relaxation broadening nor by a lack of 1H-decoupling (Nicholson et al., 1991). It was argued that bilayer defects in the gel state are not annealed as well as in the liquid crystalline phase, which leads to a considerable range of helix orientations that are not motionally averaged.

The substitution of the indole protons by deuterons had no impact on the linewidth or the 1H-decoupling efficiency in the gel state (Fig. 3 d). As the dipolar coupling to protons is usually a considerable source of linebroadening, this observation suggests strong intra- and intermolecular 1H-19F coupling to nearest neighbors. Additionally, the dipolar coupling between 19F and the adjacent deuterons also has to be considered here, at least when working with low 1H-decoupling strengths. Indeed 2H-19F dipolar splittings of up to 2 kHz have been observed by Cotten et al. (1999) on the same labeled samples, serving as a useful marker in assigning the 2H-NMR resonances. At higher B1 fields the effect of 1H-decoupling on the linewidth diminishes in our system, because the mosaic spread becomes the major contribution to the linebroadening. Our more recent experience with other 19F-labeled compounds suggests that it may be advantageous to keep the neighboring protons, as otherwise simultaneous 1H and 2H decoupling would become necessary (U. Dürr, S. L. Grage, and A. S. Ulrich, manuscript in preparation).

Lineshape analysis

When an oriented gA sample was placed horizontally into the magnet (theta  = 0°), a single resonance line was observed, both at 35°C and 5°C (Fig. 3, a and b). Given the nonaxially symmetric CSA, the observed 19F-NMR frequency is compatible with a manifold of different tensor orientations. When the peptides are immobilized in the gel phase, this redundancy can be lifted by tilting the sample at an angle theta . As illustrated in Fig. 4, the ensemble of immobilized gA molecules, which differ in their azimuthal polarity, then gives rise to a distribution of 19F-NMR frequencies. Tensor alignments that were indistinguishable at theta  = 0° now become distinguishable by their characteristic 19F-NMR lineshapes, and their Euler angles can be extracted by spectral simulation. In our first ab initio approach, we determine the relation between the CSA principal axis system (P) and a sample coordinate system (S) with the z axis pointing along the glass plate normal (see Fig. 1). The CSA orientation is described by two Euler angles alpha  and beta , whereas the third angle gamma  is evenly distributed about the sample normal. Fig. 5 shows the root mean square deviation (rmsd) between the experimental and calculated spectra, which were calculated in 1° increments for the entire orientational space spanned by alpha  and beta , for F(d)13-gA (left) and F(d)15-gA (right). Each plot combines the data from a complete series of tilt angles, as described in the Materials and Methods section. The rmsd plots possess several symmetries, corresponding to inherent redundancies in tensor alignment that cannot be lifted. When considering the symmetry properties of a nonaxially symmetric CSA tensor, there remains a fourfold ambiguity for 0° alpha  180° and beta  180°, which is correctly displayed in this analysis (Fig. 5).



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FIGURE 4   Experimental 19F-NMR spectra (dashed lines) of F(d)13-gA (a), F13-gA (b), and F(d)15-gA (c). The macroscopically aligned membrane samples were tilted at an angle theta  in the magnetic field, resulting in a set of lineshapes, which are characteristic of the CSA tensor orientation. Superimposed are the best-fit lineshape simulations (solid lines) corresponding to the minima in the respective rmsd plots of Fig. 5.



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FIGURE 5   rmsd between the experimental 19F-NMR data from oriented samples at 5°C and the simulated lineshapes, where the Euler angles alpha  and beta  relate the CSA principal axes to the axis of the sample. The analysis encompasses a complete series of spectra (see Fig. 4) acquired at different tilt angles of the sample in the magnetic field. The black areas show the rmsd minima at alpha  = 80° and beta  = 79° (plus symmetry related copies) for F(d)13-gA (left panel), and at alpha  = 90° and beta  = 73° (plus symmetric copies) for F(d)15-gA (right panel). Only the region 0° < alpha  < 180°, 0° < beta  < 180° is depicted here, because the other quadrants are redundant due to symmetry.

The minima in the rmsd plots reflect those particular CSA tensor orientations relative to the bilayer normal that fit best to the experimental data. The corresponding angles are alpha  = 80°/beta  = 79° (plus symmetry-related copies) for both F(d)13-gA and F13-gA and alpha  = 90°/beta  = 73° (plus copies) for F(d)15-gA, within ±5°. Fig. 4 demonstrates an excellent agreement between the experimental 19F-NMR spectra and the lineshape simulations obtained with the best-fit values of alpha  and beta  for each individual gA sample investigated here. The protonated and deuterated Trp analogues in position 13 are fit by the same set of lineshapes, as expected, thus confirming the consistency and reproducibility of the sample preparation, the acquisition of tilt series, and the data analysis. Interestingly, the 5F-Trp spectra for positions 13 and 15 of gA resemble one another, which suggests that both indole rings must be aligned in a similar way. Previous 2H-NMR studies of gA in the liquid crystalline state had indeed shown that all four Trp side chains assume a similar conformation (with the possible exception of Trp-9, about which there is still some disagreement in the literature) (Hu et al., 1993, 1995; Koeppe et al., 1994, 2000; Hu and Cross, 1995; Cotten et al., 1997; Cotten 1998). These indole orientations are functionally important as their electric dipole moments are aligned uniformly around the channel mouth to guide the entry of the ions.

CSA tensor assignment

So far, the CSA tensors have been successfully positioned with respect to the gel state lipid bilayer, but these results do not yet provide any information about the torsion angles chi 1 and chi 2 of the Trp side chains. To be able to draw such conclusions, the alignment of the CSA tensor has to be known with respect to the molecular frame of the indole ring. Such data is not available for 5F-Trp, but we will deduce this missing information from the previously reported structure of gA (Hu et al., 1993, 1995; Hu and Cross, 1995; Cotten et al., 1997; Cotten 1998). The published coordinates had been derived by 2H-NMR, using the very same gA peptides with 19F-labeled Trp side chains as in this 19F-NMR study. However, the previous 2H-NMR data had been acquired in DMPC bilayers at 40°C rather than in the lipid gel phase. Hence, we may use these coordinates on the assumption that the Trp side chain conformation is unaffected by the lipid phase transition, which is true to a first approximation (as outlined above, Fig. 3, a and b).

For the simulations of Figs. 4 and 5, the CSA tensor had not been constrained to the molecular scaffold of gA. As a next step we will now fix the principal axis of the CSA tensor with respect to the structure of gA that is known from the previous 2H-NMR studies. There are six straightforward and plausible possibilities to place the 19F CSA tensor into Trp: with one axis pointing along the C-F bond, another orthogonal axis lying in the indole plane, and the third axis being perpendicular to both. Lineshapes were simulated for the six possible permutations of the three axes, and the resulting spectral tilt series are summarized for F(d)13-gA in Fig. 6. The best agreement is seen in column 3, with the delta 22 axis pointing along the C-F bond, delta 11 lying in-plane of the indole ring, and delta 33 aligned perpendicular. This axis assignment is in accordance with similar 19F CSA tensors that have been described in single crystal studies of fluorobenzenes and other fluorinated aromatic compounds (Snyder, 1965; Nehring and Saupe, 1970; Griffin et al., 1973; Halstead et al., 1975; Mehring, 1983; Hiyama et al., 1986).



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FIGURE 6   To assign the principal axes of the 19F CSA tensor in the molecular frame of 5F-Trp, the six possible permutations were tested. The CSA coordinate system was constrained symmetrically to the indole ring with one of its principal axes aligned along the C-F bond, another axis perpendicular to the indole plane, and another axis within the plane. Based on the 5F-Trp side chain structure known from 2H-NMR, the expected lineshapes for a uniaxially oriented sample at a series of tilt angles were calculated for the six possible assignments (solid lines). When compared with the experimental spectra of F(d)13-gA (dashed lines), only the assignment in column 3 gives a good fit, with delta 22 parallel to the C-F bond, delta 11 in the indole plane, and delta 33 perpendicular to the ring.


    DISCUSSION
TOP
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
CONCLUSIONS
REFERENCES

The aim of this work was to introduce a new 19F-NMR strategy for structural studies in biomembranes, especially for peptides and proteins with tryptophan side chains. Incorporation of fluorotryptophan is a structurally conservative and highly sensitive approach to monitor directly any changes in the alignment and dynamics of the labeled side chain as well as the polypeptide on the whole. For example, the symmetry properties of the 19F-NMR powder lineshape readily reveal the onset of long-axial peptide rotation, when a membrane sample is heated through the lipid gel-to-liquid crystalline phase transition (see Fig. 2). For peptides that are immobilized in the gel state, we have demonstrated how the alignment of a 19F-labeled Trp side chain can be determined with respect to the membrane normal. The structure analysis of the indole ring is based on the anisotropic chemical shift of the 19F-label in a macroscopically oriented sample that has to be measured at different tilt angles. This approach was applied to gramicidin A labeled at position 13 or 15 with 5F-tryptophan that was either protonated or deuterated, - the latter being the same material that had been recently used in an analogous 2H-NMR study (Cotten et al., 1999). Based on the gA coordinates obtained by 2H-NMR in liquid crystalline DMPC, we were able to assign the principal axes of the 19F CSA tensor in the molecular frame of the 5F-Trp indole ring, notably in the same lipid environment but in the gel state. The most shielded CSA component delta 33 of 5F-Trp was found to be perpendicular to the indole plane, delta 22 to be aligned with the C-F bond, and the least shielded delta 11 to be in-plane of the ring and orthogonal to the C-F bond.

To make the above tensor assignment, we had assumed that the principal axes of the CSA tensor are symmetrically constrained to the planar indole ring and to the C-F bond direction. The corresponding best fit of the predicted lineshapes in Fig. 6 (column 3) does indeed reproduce all features of the experimental 19F-NMR data quite well. However, the agreement is not as perfect as for the unconstrained case seen in Fig. 4, where the CSA tensor had been treated independently of any molecular framework. A possible explanation for this difference could be a deviation of the CSA principal axes from the ideal symmetry of the indole frame that had been assumed above. In that case the tensor would nonetheless be expected to obey the planar symmetry of the indole ring reasonably well, i.e., it should deviate mainly by a rotation around the indole normal. Allowing for such rotational deviation, however, it was not possible to find a tensor orientation that obeys the planar indole symmetry. Instead, we found that the delta 33-axis of our CSA tensor would have to be tilted away by ~20° from the indole normal.

The divergence was estimated by considering the Euler transformation (alpha PI, beta PI, gamma PI,) from the principal axis frame (P) to the indole-fixed frame (I, coinciding with P in the constrained case) the following way: We positioned the CSA tensor into the known framework of the gA molecule according to the Euler angles determined for the unconstrained case. Because the two systems P and I are indeterminate with regard to their rotation about the sample normal, their azimuthal difference Delta gamma  = gamma PS - gamma IS and hence the Euler angles alpha PI, beta PI, gamma PI are not uniquely defined. An additional assumption is necessary to closer specify the tensor orientation in the indole-fixed frame. It is reasonable to choose the remaining free parameter Delta gamma such that the planar indole symmetry is most fully conserved, i.e., the z axis of P is closest to the z axis of I. This is the case for Delta gamma  = 0° (or 180°), yielding alpha PI = 80°, beta PI = 19°, gamma PI = -87° (plus three further, equivalent solutions). The transformation described by these Euler angles is close to a rotation of beta PI about the x axis, which would be alpha PI = 90°, beta PI, gamma PI = -90°). That way, we estimated that the tensor's delta 33-axis is tilted away from the indole normal by ~20°, hence it does not obey the planar symmetry of the aromatic ring.

There may be two explanations to account for this apparent discrepancy between the CSA alignment obtained here ab initio by 19F-NMR on the one hand and the predicted CSA alignment on the other hand that had been calculated under the assumption that the tensor is fixed to the molecular coordinates of gA known from 2H-NMR. First, the 19F CSA tensor could indeed be significantly tilted out-of-plane of the indole ring due to the influence of neighboring side chains, the lipid environment, or hydrogen-bonds formed. However, as the CSA tensor orientation is usually a rather local property of the environment, a CSA tensor not obeying the planar indole symmetry seems rather implausible. The few 19F CSA tensor alignments that are known for aromatic crystalline compounds, where the impact of neighboring groups is just as likely as in gA, show only small deviations of a few degrees (Snyder, 1965; Nehring and Saupe, 1970; Griffin et al., 1973; Halstead et al., 1975; Mehring, 1983; Hiyama et al., 1986). As an alternative explanation we therefore propose that the side chain conformation measured here at 5°C differs from the conformation described previously by 2H-NMR at 40°C. After all, the previous 5F-Trp coordinates had been obtained in a liquid crystalline lipid environment, and they were used only to a first approximation for the current analysis of gA in the gel phase (Hu et al., 1993, 1995; Hu and Cross, 1995; Cotten et al., 1997; Cotten, 1998).

Given the arguments above, we attribute the slight but significant mismatch of the experimental and simulated spectra in Fig. 6 (column 3) to genuine differences in the side chain conformation in the different phase states of the lipid bilayer. Hence, by an in situ analysis of the 5F-Trp alignment, it is possible now to determine directly the torsion angles chi 1 and chi 2 in the gel phase. The side chain conformation was structurally refined under the following two assumptions: 1) The Calpha -Cbeta orientation stays the same below and above the phase transition temperature, meaning that the structure of the hydrogen-bonded gA backbone does not change; and 2) the CSA tensor is aligned with its axes pointing along the indole-fixed frame directions according to the assignment of Fig. 6 (column 3). The in situ rmsd analysis for F(d)13-gA as a function of the two rotamer angles chi 1 and chi 2 is shown in Fig. 7. This plot is basically a translation from the general orientational space spanned by the Euler angles alpha  and beta  (as in Fig. 5) into the conformational space of chi 1 and chi 2, leaving out those orientations that are not sterically accessible by any combination of torsion angles. Each of the four sets of minima in the chi 1/chi 2 map correspond precisely to the minima found in the alpha -beta map, meaning that the ab initio 5F-Trp orientations are indeed readily accessible by rotations about the Calpha -Cbeta and Cbeta -Cgamma bonds of the peptide. It is not yet possible to tell from the 19F-NMR data alone, which of the symmetry-related solutions corresponds to the actual side chain conformation in gA, just as the previous 2H-NMR studies had to leave this question open. Table 1 summarizes the most reasonable group of solutions in analogy to the 2H-NMR results. Studies are currently in progress to find the unique solution from 19F-19F dipolar distance constraints between two 19F-labeled indole rings.



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FIGURE 7   Using the fundamental assignment of the 19F CSA tensor axes (see Fig. 6), the conformation of the 5F-Trp side chains in gA can now be refined in terms of the two torsion angles chi 1 (Calpha -Cbeta bond) and chi 2 (Cbeta -Cgamma bond). In analogy to Fig. 5, rmsd plots were generated for F(d)13-gA (left panel) and F(d)15-gA (right panel) as a function of chi 1 and chi 2. The minima display the allowed conformations of the two 5F-Trp side chains on gA in the gel state of the lipid membrane, as summarized in Table 1. The full range from 0° < chi 1 < 360°, 0° < chi 2 < 360° is depicted here, as the angles are unique because of their relation to the peptide backbone.


                              
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TABLE 1   Possible side chain torsion angles of 5F-Trp in positions 13 and 15 of gA embedded in DMPC, listed pairwise as a combination of chi 1/chi 2 with an error of ±5°

When comparing the values of chi 1 and chi 2 in Table 1 for the liquid crystalline phase and the gel state, the differences of ~10° to 20° suggest a small but significant change in the conformation of both Trp-13 and -15 upon passing through the lipid phase transition. (This does not however jeopardize the fundamental assignment of the CSA tensor axes in Fig. 6). It is indeed reasonable to suppose that the peptide side chains will respond to the considerable increase in bilayer thickness in the gel state, especially as the Trp residues are located in the hydrophilic-hydrophobic interface of the membrane. In view of the multiple allowed solutions, it is not yet possible to recognize any systematic kind of orientational change, such as an adjustment toward an ideal trans/gauche conformation, or toward a more parallel alignment of the indole ring with the lipid chains. To systematically assess the effect of bilayer thickness it would now be interesting to monitor the Trp behavior in various lipids with different acyl chain lengths. Because the indole dipole orientations play a significant role in the function of the gramicidin A ion channel, previous studies in membrane-mimicking environments have also paid close attention to the conformation of the tryptophan side chains (Arseniev et al., 1985; Ketchem et al., 1997; Townsley et al., 2001). A comparison of the solid-state NMR structure in planar bilayers with solution state 1H-NMR results in micelles revealed differences in torsion angles on the same order of magnitude as those detected here for the change in the lipid phase state. Because 19F-labeling itself induces a slight conformational change of similar size, however, it is not meaningful to compare these chi 1/chi 2 values further.

With regard to the accuracy of the proposed values, it is important to point out that different choices of published indole coordinates lead to an intrinsic uncertainty of ~5° in determining the Trp conformation. Hence, our results are accurate to within 10°, given the quality of fit between the experimental 19F-NMR data and the simulated lineshapes. The values in Table 1 illustrate the influence of choosing a particular set of indole geometries, namely those used by Hu et al. (Hu and Cross, 1995; Hu et al., 1995) and used throughout this publication or by Cotten et al. (Cotten et al., 1997; Cotten, 1998). As noted in the Materials and Methods section, the indole geometries found in the literature and in databases differ only very slightly among each other, but these small differences translate into variations in chi 1 and chi 2 of ~5°. Nonetheless, even if we had based our entire analysis on the indole geometry used by Cotten et al. (Cotten et al., 1997; Cotten, 1998), this would only have marginally altered the simulated lineshapes on which the tensor axes assignment is based here, leaving our fundamental assignment and other basic conclusions unchanged. We also note that our 19F-NMR analysis of the single nonaxially symmetric CSA tensor has yielded 4 × 4 minima in the full range between 0° and 360° (e.g., for F(d)13-gA), whereas only 4 × 2 minima were observed in previous 2H-NMR studies. This finding is consistent with the inherently higher symmetry of the single 19F CSA tensor compared with two or more magnetically inequivalent 2H-labels on an indole ring, yielding a higher information content for the latter case. Furthermore, in contrast to the 2H-NMR study by Cotten et al. (Cotten et al., 1999), all minima in our chi 1/chi 2 plots have the same rmsd value. This means that all of the best-fit conformations in our unconstrained alpha /beta space are just as readily accessible in the constrained chi 1/chi 2 space. Differences in the depths of the minima would be observed in cases where only a subset of the absolute minima in alpha /beta space were accessible in the chi 1/chi 2 space.

The strategy of labeling with 19F allowed for highly sensitive NMR experiments, requiring only small amounts of material, such as 2 mg peptide. Typical acquisition times were between 4 and 10 h, depending on the spectral lineshape to be measured (narrow peaks for horizontally oriented samples, or wideline spectra from tilted samples). These experimental 19F-NMR conditions call for a direct comparison with previous 2H- and 15N-NMR studies on similar gA samples. For example, Cotten et al. (Cotten et al., 1997; Cotten 1998) used ~25 mg of the same 19F/2H-labeled peptide to obtain oriented 2H-NMR spectra in 6 h. Koeppe et al. (1994, 1995, 2000) have also studied 2H-labeled Trp in gA and used 6 mg (or 12 mg) peptide to acquire spectra over a period of 1 to 3 days (or 12-36 h, respectively), and a related study on 2H-labeled valine in gA needed 50 mg to obtain powder spectra in 8 h (Lee et al., 1995). Previous 15N-NMR studies required 1 to 2.5 days (and up to 4 days) to obtain powder-lineshapes with 80 mg of peptide (Hu et al., 1993, 1995; Hu and Cross, 1995). Given that the intrinsic sensitivity of an NMR experiment scales with the gyromagnetic ratio as gamma 5/2 (Ernst et al., 1990; Abragam, 1996), 19F theoretically offers a 100-fold advantage in sensitivity compared with 2H, and 1000-fold compared with 15N. This translates into an even greater reduction in measurement time if the same amount of material was to be used (since S/N proportional to  <RAD><RCD>time</RCD></RAD>). However, these factors are reduced by approximately one order of magnitude, because, in the case of 2H-NMR, the faster T1-relaxation allows shorter recycle delays. Likewise, cross-polarization from 1H improves the situation for 15N-NMR by a factor of 10 (gamma H/gamma N). Furthermore, our 19F-NMR spectra suffer from a m