| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
Biophys J, December 2002, p. 3490-3498, Vol. 83, No. 6

*Max-Planck-Institut für Molekulare Physiologie, 44227 Dortmund, Germany; and
University of Dortmund, Department
of Chemistry, 44227 Dortmund, Germany
| |
ABSTRACT |
|---|
|
|
|---|
The pressure dependence of the photocycle kinetics of
bacteriorhodopsin from Halobacterium salinarium was
investigated at pressures up to 4 kbar at 25°C and 40°C. The
kinetics can be adequately modeled by nine apparent rate constants,
which are assigned to irreversible transitions of a single relaxation
chain of nine kinetically distinguishable states
P1 to P9. All
states except P1 and
P9 consist of two or more spectral
components. The kinetic states P2 to
P6 comprise only the two fast equilibrating
spectral states L and M. From the pressure dependence,
the volume differences
V
V
11.4 ± 0.7 ml/mol
(P2) to
V
V
| |
INTRODUCTION |
|---|
|
|
|---|
Bacteriorhodopsin (BR) is the best-characterized
protein of the four archaeal rhodopsins discovered in
Halobacterium salinarium. It can be found in the purple
membrane of the bacterium, where it functions as a light-driven proton
pump that generates a proton gradient between the cytoplasmic and the
extracellular side of the membrane. The bacterium can use this
potential for the synthesis of ATP. The proton transport is performed
during a multistep relaxation pathway (photocycle) that was a subject
to many investigations since the discovery of BR in 1971 (Oesterhelt
and Stoeckenius, 1971
). Lozier et al. (1975)
assigned the spectrally
distinct intermediates in an alphabetical order. There were five
intermediates in the microsecond to millisecond time range, which they
assigned as K, L, M, N, and
O. Although the appearance of only five spectrally distinguishable states is still valid, additional investigations on the
photocycle kinetics showed that more than five kinetic components (rate
constants) are necessary to describe the photocycle of BR. For recent
reviews on the BR photocycle see Betancourt and Glaeser (2000)
and
Balashov (2000)
.
BR is a remarkably stable protein that denatures at ~100°C (Wang
and El Sayed, 2000
) and shows no significant denaturation under
pressures up to 26 kbar (Barnett et al., 1997
) at ambient temperature.
Due to the latter observation, it is possible to monitor the pressure
dependence of the photocycle kinetics over a wide range.
The behavior of all systems under high pressure is governed by Le
Châtelier's principle, which predicts that the application of
pressure shifts an equilibrium toward the state that occupies a smaller
volume and accelerates processes for which the transition state has a
smaller volume than the ground state. The knowledge of the reaction
volume
V and activation volume
V
provides important constraints
on the nature of the reaction and its mechanism. In most cases,
pressures used to investigate biochemical systems range from 1 bar up
to 10 kbar. Such pressures only change intermolecular distances and
affect conformations, but do not change covalent bond distances or bond
angles. The covalent structure of low molecular weight biomolecules, as
well as the primary structure of macromolecules, is not perturbed by pressures up to ~20 kbar. Pressure acts predominantly on the spatial (secondary, tertiary, quaternary, and supramolecular) structures of
these macromolecules. A detailed discussion about the effects of
pressure on proteins and the elementary processes that correspond to an
overall volume change of biological systems have been reviewed in
detail (Gross and Jaenicke, 1994
; Mozhaev et al., 1996
; Winter and
Jonas, 1999
).
Volume changes associated with the reactions during the BR photocycle
have been measured in different ways. Information on volume changes of
proteins has been obtained by optoacoustic spectroscopy, which monitors
reactions in the nano- and short microsecond time range (Braslavsky and
Heibel, 1992
; Schulenberg et al., 1994
). The observable time range can
be expanded into the micro- and millisecond range by combination with
the photothermal beam deflection method (Schulenberg et al., 1995
;
Jackson et al., 1981
). Using these methods, Schulenberg et al. (1994
,
1995
) found a contraction of 11 ml/mol during the first 200 ns of the
BR photocycle, which the authors ascribed to the BR
K
transition. Subsequent expansions of 60 and 145 ml/mol were attributed
to the transitions K
L and L
M, respectively, and a second contraction of
185 ml/mol was found for the decay back to the ground state.
Another approach to elucidate the effect of pressure on the photocycle
of BR is the investigation of the pressure dependence of reaction half
times. From the absorbance changes at a monitoring wavelength of 412 nm, Tsuda et al. (1983)
determined the half time of the M
intermediate at pressures up to 2700 bar. Marque and Eisenstein (1984)
analyzed three characteristic wavelengths at pressures up to 1700 bar
and extracted three apparent half times. They assumed an unidirectional
sequential photocycle and attributed the apparent half times to the
K
L and the L
M
transition as well as a component that describes the slower part of the
photocycle. Both investigations demonstrated the deceleration of
kinetics upon the pressure increase.
Váró and Lanyi (1995)
performed pressure-dependent
experiments up to 1000 bar at pH 10. The authors concluded that the
largest volume increase of ~30 ml/mol occurs at the
M1
M2 irreversible step of the BR
transformations. They attributed this to the outward tilt of the
cytoplasmic end of helix F. This result does not agree with direct
photoacoustic measurements of the volume increase of 145 ml/mol due to
the L to M transition (Schulenberg et al., 1995
).
In this article, we present the results of investigations of the BR
photocycle kinetics measured at the wider pressure range up to 4 kbar
at two selected temperatures, 25°C and 40°C, and pH 7.0. The
kinetic model and the method for data evaluation of Chizhov et al.
(1996)
have been used for the data analysis. These measurements allowed
for the first time to separate the volume changes due to a small event,
presumably the movement of a single proton, from the volume changes due
to the global conformational changes that take place during the
photocycle. Note that there is no direct compliance between the
information obtained, i.e., by optoacoustic spectroscopy and our
results, but both should serve to elucidate the true thermodynamic path
of the relaxation.
| |
MATERIALS AND METHODS |
|---|
|
|
|---|
Sample
The purple membrane suspension was prepared from
Halobacterium salinarium (strain S9) according to the method
of Oesterhelt and Stoeckenius (1974)
. The BR concentration was
~4 × 10
5 M, pH 7.0 (15 mM Tris/HCl).
This buffer has a nearly zero ionization volume (Gross and Jaenicke,
1994
) and was used to ensure a constant pH over the measured pressure
range. The salt concentration was 150 mM NaCl.
High pressure equipment
The high pressure cell was described in detail elsewhere
(Woenckhaus et al., 2000
). It is equipped with flat diamond windows and
a thermostatable jacket. The pressure was changed by a hand operated
hydraulic pump with water as pressurizing medium. The pressure was
determined by a manometer from Heise, New England, Newtown with an
accuracy of ±10 bar. The high-pressure tubings, valves, and the
pressure pump were purchased from Nova Swiss (Effretikon, Switzerland).
Photocycle measurements
The laser flash photolysis setup was similar to the setup used
by Chizhov and coworkers (Chizhov et al., 1996
; Chizhov and Engelhard,
2001
) with slight modifications to insert the high pressure cell. The
monitoring light passed through two windows (open aperture 2 mm), which
were made from natural diamond (type IIa quality, Drukker, Cuijk, The
Netherlands). The optical path was 1.5 mm. The excitation light was
delivered to the sample cell through one of the windows with an angle
of ~15° to the axis of the monitoring light. Two digital
oscilloscopes (LeCroy 9361 and 9400A, 25 and 32 Kbytes of buffer memory
per channel, respectively) were used to record the traces in two
overlapping time windows. With this setup, a time range of 10 ns up to
several seconds is covered. Due to the laser artifact at early times
only data points from 1 µs after the laser pulse were used for data
evaluation. The laser source was a frequency-doubled Nd:YAG laser
(Continuum, Surelite II-10, 532 nm, 10 ns, 4 mJ/cm2). Twenty-five laser pulses were averaged
at each wavelength to improve the signal to noise ratio. The initial
data points (~50 K) were reduced by a quasilogarithmic data
compression to give ~100 points per time decade. The correspondent
improvement of signal to noise ratio was accounted for by the data
weights that were initially estimated from the noise of the pretrigger
base line. The wavelengths were varied from 360 to 700 nm in steps of
10 nm, giving 35 spectral points. Measurements were performed at 13 pressure points from 1 to 4000 bar and two different temperatures (25°C and 40°C). The resulting 26 data sets were used for the analysis.
Measurements of BR ground state
For measurements of the light-adapted BR ground state, the high pressure sample cell was attached to a spectrophotometer (Beckmann, Du650). The sample was illuminated with a 150-W halogen lamp (Schott, KL1500 electronic) equipped with a 510-nm cutoff-filter (Schott, OG 515) for ~10 min before each measurement to ensure light-adaptation. Twenty-six ground state spectra were taken at the same conditions that were used for the kinetic measurements.
Data analysis
A set of apparent half times and their amplitude spectra were
obtained independently for each of the 26 data sets, using the global
multiexponential nonlinear least squares fitting program MEXFIT
(Müller et al., 1991
; Müller and Plesser, 1991
) as
described by Chizhov et al. (1996)
. The apparent half times were
assigned to the intrinsic transitions assuming an irreversible
unbranched chain of relaxations
P1
P2
...
Pn
in which
Pi is the correspondent kinetic state
of the model. This model allows calculating the differential spectra of
kinetic states from the amplitude spectra of the derived exponential
terms. By dividing the spectra by the fraction of excited molecules
(fraction of cycling, FC) and adding them to the spectra of the initial states, the absolute spectra of
kinetic states were obtained. For further details of the method see
Chizhov et al. (1996
, 1998
, 2001
).
The derived absolute spectra were approximated by a global
multi-Gaussian fit using the global fit procedure of the program Igor
Pro 4.0 (Wavemetrics, Inc.). From the fit, the number of spectral states and their amplitudes are obtained for each kinetic state. The relative concentrations of the spectral states could be
calculated from the corresponding amplitudes. The high overlap of the
-bands of the spectral states with the absorption maximum of the
M state was accounted for by assuming that the ratio of amplitudes between the
- and the
-band are the same for all spectral states. This analysis was performed using standard linear regression subroutines of the program Origin 6.0 (Microcal Software, Inc.) The pressure dependence of the relative concentrations was fitted globally to extract the volume changes between the different spectral states.
The ground-state spectra of BR at different conditions were fitted with
three skewed Gaussian functions and a function describing the Rayleigh
scattering as described by Chizhov et al. (1998)
.
| |
RESULTS AND DISCUSSION |
|---|
|
|
|---|
Ground state spectra
Ground state spectra of the light adapted sample at 25°C are
plotted for different pressure points in Fig.
1. They were fitted with two skewed
Gaussian functions and one function describing the Rayleigh scattering.
The spectra presented in Fig. 1 are already subtracted by the Rayleigh
scattering. The major Gaussian component has an absorption maximum at
~570 nm (
-band of the retinal chromophore). Another small Gaussian
component at ~410 nm corresponds to a higher level of excitation of
the chromophore (
-band). The parameters of the fit for the main
absorption peak of the averaged spectrum over all pressure points are
included in Table 1. The dependencies of
the amplitude Amax and the maximal
position
max of the main absorption peak on
pressure are shown in the inserts of Fig. 1, which indicate that the
pressure dependence of
max is more pronounced than that of Amax. Interestingly, both
curves are bell-shaped with maxima at ~3 kbar. Obviously, two
opposing effects are giving rise to this behavior, which might be
related to the contraction of the solvent with increasing pressure
(Tsuda and Ebrey, 1980
) and a conformational change of BR during an
II- to
I-helix
transformation at pressures beyond 3000 bar (Barnett et al., 1997
).
Whether these two points are valid explanations cannot be answered
conclusively from the present results. It should also be noted that
only two pressure points above 3000 bar are available. To clarify the
origin of the pressure dependence of the ground state spectra of BR, further experiments using infrared and/or absorption spectroscopy should be undertaken. However, these data are of minor relevance for
the further discussion.
|
|
Multiexponential global analysis
The absorption changes after laser excitation at 25°C are shown
in Fig. 2 for three characteristic
wavelengths and different pressures from 1 to 4000 bar. The
results of the fit with the nonlinear multiexponential least squares
fitting program MEXFIT (Müller et al., 1991
; Müller and
Plesser, 1991
) are included in this figure. It was necessary and
sufficient to fit the experimental data with nine exponential
components, which is one component more than found in an analogous
investigation of the temperature dependence of the BR photocycle
kinetics (Chizhov et al., 1996
). A comparison of the apparent half
times (
1/2) at 1 bar and 25°C with those from
Chizhov et al. (obtained from measurements at 1 bar and 24°C) shows
that the transition with a half time of 17 ms splits into two
components (7.3 and 40 ms; Table 2).
|
|
The nine apparent half times at 25°C and 40°C are plotted
against pressure in Fig. 3. Included are
data from Marque and Eisenstein (1984)
and Tsuda et al. (1983)
. The
half times
2 to
6
show a small or no pressure dependence, whereas
1,
7 to
8, and
9 (25°C
only) are strongly dependent on pressure. (Note that the amplitude of
9 was very low, which results in high
uncertainties in the derived half time. The difference in the
dependence on pressure for 25°C and 40°C may be due to this fact.)
Between 1 bar and 2000 bar, the half times
7
and
8 increase by approximately one order of
magnitude but do not change further. From the linear dependence of the
logarithms of rate constants on pressure, it is possible to calculate
the activation volume
V
of the
corresponding transition according to the following equation:
|
(1) |
|
|
In the work of Marque and Eisenstein (1984)
, only three kinetic
components were resolved at 25°C. The fastest half time (~1 µs)
is in very good agreement with the results of the present work
regarding the absolute value as well as the dependency on pressure. The
significant pressure dependence of the second half time, describing the
formation of M, seem to be only an apparent effect, because
the corresponding half times 2 to 6 presented here are almost pressure
insensitive. The pressure effect observed by Marque and Eisenstein
(1984)
might be due to the limited resolution, leading to a combination
with the neighboring half times. A similar explanation can be given for
the slowest half time described by Marque and Eisenstein (1984)
(~5
ms) as well as for the data of Tsuda et al. (1983)
.
Unidirectional sequential model
Generally, the number of N transient states results in
N(N + 1) intrinsic transitions. Nagle (1991)
showed that the problem of solving kinetic photocycles only becomes
mathematically determinate if the number of intrinsic transitions is
reduced to N, which requires a unidirectional unbranched
model. Therefore, a branched scheme should be avoided as long as it is
not necessary to explain the experimental data.
To obtain the spectra of the kinetic states, it is necessary to
assign the derived set of apparent half times to the irreversible transitions of the model (Nagle, 1991
; Parodi et al., 1984
). In principle, N! permutations are possible, i.e., 9! = 362,880. This huge number of possibilities can be largely reduced if an
ascending order of half times (
i <
i+1) is applied. Some exceptions from the
fully ascending order of assignment should be carefully checked.
Temperature-dependent investigations of the BR photocycle showed two
possible assignments, which led to reasonable spectra of the
intermediates (Chizhov et al., 1996
). From these, a submodel in which
6 >
7 was
preferable over
6 <
7 at standard pressure in terms of simplicity
of the resulting spectra. In the present work, several different
permutations of the linear scheme have also been tested. Again the two
submodels described above fitted the data best. It was found that the
submodel with
6 >
7 is preferable at low pressures, whereas at higher pressures the submodel with
6 <
7 is
preferable in terms of simplicity. As no strong criterion was found
that favors one of the models over the whole range of analyzed parameters, the submodel with
6 >
7 was chosen for further analysis.
Spectra of intermediates
The only unknown parameter to calculate the absolute spectra
of intermediates is the fraction of cycling
FC. This factor was varied from 1 to 0 for a particular data set until no contribution from the initial state
and/or negative absorbance was observed. An averaged value of
FC = 0.27 was obtained, which is
almost identical to the value of FC = 0.26 obtained from the temperature-dependent measurements (Chizhov et
al., 1996
). Using the model of descending order of rate constants with
a single permutation of the constants 6 and 7 provides the absolute
spectra of intermediates at 25°C and different pressures, which are
presented in Fig. 4. For each pressure
point, the corresponding spectrum of the BR ground state at this
pressure was used for the calculation. All spectra can be fitted
simultaneously by allowing a variation of only the amplitudes of five
Gaussian peaks (Fig. 4; solid lines). The corresponding Gaussian
parameters maximal position
max, asymmetry
factor
, and half-bandwidth 
of the five spectral states are
summarized in Table 1. Only five spectrally distinct states
(K, L, M, N, and
O) can be discerned in agreement with the originally
determined number of major spectral components (Lozier et al., 1975
).
|
The fastest resolved kinetic state P1
(half time 0.7 µs) contains a major spectral component with an
absorption maximum at ~596 nm and can therefore be assigned to the
K intermediate. A smaller absorption peak at ~410 nm is
probably due to the
-band of this state. Note that the spectra with
the lowest amplitudes correspond to the pressure points 1 bar and 400 bar, which have half times smaller than 1 µs. Therefore, our
experimental time resolution results in high uncertainties in these
spectra. Besides these two spectra, P1
is essentially independent on pressure.
The next kinetic states P2 to
P5 are describing an equilibrium
between the spectral states L and M, which is
pressure dependent. At 1 bar, the equilibrium is observable from
P2 to
P5, in agreement with the work of
Chizhov et al. (1996)
. P6 shows
equilibrium between the M and the N spectral
states with an increasing amount of N at higher
temperatures. At higher pressures, the N contribution is diminishing and some contribution of L is rising,
expanding the presence of the L/M equilibrium to
the P6 kinetic state. At constant
pressure, the equilibrium is gradually shifted toward M from
P2 to
P5
(P6). It is highly pressure sensitive,
with a shift to the M state with increasing pressure in the
kinetic state P2 and a shift to
L with increasing pressure in the late kinetic states. The
P3 state is nearly pressure insensitive.
Due to its complex properties the later part of the photocycle (kinetic
states
P7-P9)
cannot be satisfactorily analyzed. A fit with skewed Gaussian functions
shows contributions from the spectral states M,
N, and O within the kinetic state
P7. With rising pressure, the
O concentration decreases while that of M increases. Because the absorption spectra of N and
O overlap substantially (O
max = 624 nm;
N
max = 569 nm), it is
difficult to quantify the exact concentration of N. The
strong decrease of O with increasing pressure indicates that
this spectral state has a significantly larger volume than both
M and N.
At lower pressures P8 can be fitted with only two Gaussian functions with maximal positions at ~410 and ~570 nm. However, at pressures above ~1500 bar, the sum of amplitudes of both peaks reach a constant nonzero value. This behavior cannot be explained by contributions of only two spectral states, as according to Eq. 2 (see below) the equilibrium should completely be shifted to one of the states at high pressures. It is, therefore, very likely that P8 also has a contribution of a third spectral state that cannot be separated from N due to highly overlapping band positions, which might be the precursor of the ground state BR'.
The kinetic state P9 shows only minor differences to the ground state, although small contributions of M and BR' cannot be excluded.
L/M equilibrium
As discussed above, the formation of M is accompanied
by successive pressure-dependent fast equilibrium between the two
spectral states L and M. This pressure dependency
allows the calculation of the volume differences between L
and M in each kinetic state. Using the relative absorbances
listed in Table 1, the relative concentrations X of the
spectral states were calculated at each pressure and particular kinetic
state. The dependence of the relative concentrations on pressure was
fitted globally for the kinetic states
P2 to
P6 using the following equation to
extract the volume differences between the two spectral states
L and M:
|
(2) |
U
U
U
U
S
V
V

V
The results of the fit are listed in Table
4 and shown together with the data in the
corresponding inserts of Fig. 5. The general trend of the gradual shift of the L/M
equilibrium from L to M state, which is
represented by the first term
U
T ×
S
10 to +20 ml/mol on this path and
can shift the equilibrium in the opposite direction if the pressure
increases. It is interesting that at the later kinetic states of the
photocycle the situation is changing again: in
P7 and
P8 states the M spectral form has a smaller volume than its partners of equilibrium N
and O. To illustrate the results, the free energy
differences at different pressures, the pressure dependence of the
L
M equilibrium, as well as the volume changes
between L and M are presented in Fig. 5.
|
|
To interpret the data, it is useful to recapitulate the effects
pressure has on the thermodynamic properties of protein solutions. In a
protein, the largest effects are to be expected to arise from hydration
changes since, e.g., covalent bonds are not likely to be broken or
formed, which would account for an increase or decrease of volume of
~10 ml/mol, respectively (for a recent review on high pressure
effects on protein structure and function, see Mozhaev et al. (1996)
.
Generally, hydrogen bonds are stabilized by high pressures, whereas a
formation of hydrophobic contact is accompanied by a volume increase
and is therefore disfavored by pressure. From functional analysis of BR
using Fourier transform infrared-spectroscopy, it is well established
that during the L-M transition the Schiff base
proton moves to Asp-85 (for review, see Balashov 2000
). Concomitantly,
a proton from a hydrogen bond network (XH) located in the extracellular
channel releases a proton to the bulk phase, probably via surface
groups (Gottschalk et al., 2001
; Brandsburg-Zabary et al., 2000
).
Furthermore, it is likely that other hydrogen bonds are broken and
formed during the L-M conversion, although the
sum of hydrogen bonds might not be altered. Because the formation of a
singly charged ion in water decreases the volume by ~10 ml/mol, it
can be expected that predominantly the proton transfer reactions
contribute to the observed volume differences between L and
M. This so called electrostriction effect is even more
pronounced in less polar solvents (Van Eldik et al., 1989
).
How can the increase of
V
). The proton transfer from the Schiff base to Asp-85 neutralizes a
pair of charges for which a volume increase of at least 20 ml/mol can
be expected to occur. (Indeed, the interior of the protein can be
expected to be less polar than an aqueous environment, resulting in a
volume change of more than ~10 ml/mol for each charge.) The release
of a proton from the XH group to the bulk can lead to a volume decrease
of approximately
20 ml/mol or smaller depending on the nature of XH.
If XH is a cationic species
(H5O2+) as
proposed by Spassov et al. (2001)
, the net charge distribution would
not change. On the other hand, the deprotonation of one of the surface
carboxylate groups (Glu-194 or Glu-204) would create two new charges
and, therefore, would be accompanied by a volume decrease of
V
20 ml/mol. Even if
the proton release to the bulk generates two charges and therefore
compensates the charge elimination due to the proton transfer from the
Schiff base to Asp-85, a total volume increase can be expected as the
less polar environment in the center of the molecule will result in a
higher amplitude of volume change (Van Eldik et al., 1989
).
With these considerations, it is now possible to assign the step
that is associated with the proton release to the extracellular surface. Obviously, the two different proton transfer processes lead to
volume changes with opposite sign. From the observation that
V
Asp-85
ion pair neutralization. This can be explained in the following way.
The proton movement itself can be considered to be much faster than the
observed half times. Even the volume decrease due to electrostriction,
which follows the proton release to the bulk, is very fast in
comparison with the time scale of the transitions from
P2 to
P6, as it is mainly determined by the
speed of reorientation of bulk water molecules (Brandsburg-Zabary et
al., 2000
; Svishchev and Zassetsky, 2000
). On the other hand, the
volume change takes much more time if the formed or eliminated charges
are situated in the center of the protein, as large conformational
changes may be necessary to accomplish this process. From the observed
change of
V
Asp-85 proton movement) takes place on the time scale
of the transitions from P2 to
P6. As the center of the molecule is
less polar than the extracellular side, it overcompensates the volume decrease due to the formation of the external ion pair. In
P2, the Schiff base/Asp-85 proton
movement can take place as well (and the position of the proton
determines if a L-like or a M-like absorption is
obtained), but the protein interior cannot follow the movements of the
proton. This means that in P2 the
volume increase in the center of the molecule is not accomplished, and only the proton release to the bulk will be observable as a volume decrease in this state.
The nature of the decay of electrostriction is not completely
clarified yet. It could take place via a multistep reaction, i.e., the
conformational changes during the transitions from
P2 to
P6 resulting in a stepwise decay of
the electrostrictive compression that was present in L. If
the relaxation is not coupled with the kinetically resolvable
transitions, the electrostriction decay may also take place in a
single-step mechanism parallel to the spectroscopically observable
transitions. In the latter case, from our experiments one could
estimate a characteristic transition time of this process in the order
of 100 µs. Both mechanisms could explain the behavior of
V
CONCLUDING REMARKS
The results presented in this work can be explained by an
unidirectional sequential scheme as was also deduced from the
temperature-dependent measurements of the BR photocycle (Chizhov et
al., 1996
). The two parts of the photocycle (M rise and
M decay) are distinguished by their pressure dependence.
Whereas the rate constants leading to M are not dependent on
pressure P7 and
P8 are strongly affected between 1 bar
and 2000 bar. On the other hand, the quasiequilibrium between the
spectral states L and M is highly sensitive to
pressure. This latter observation allows a differentiation between the
proton release step and the neutralization of the Schiff base/Asp-85 ion pair. The creation of a net charge in the release step leads to a
volume decrease, which is compensated in the later steps of the
L-M transition by positive volume changes due to
the proton transfer from the Schiff base to Asp-85.
| |
ACKNOWLEDGMENTS |
|---|
We like to thank A. Reulen for the preparation of BR. J. Woenckhaus from the University of Dortmund and K.-H. Müller are acknowledged for technical help and fruitful discussions. The BMBF and the DFG are gratefully acknowledged for financial support.
| |
FOOTNOTES |
|---|
Address reprint requests to Björn Klink, Max-Planck-Institut für Molekulare Physiologie, Otto-Hahn-Str. 11, 44227 Dortmund, Germany. Tel.: 49-231-1332376; Fax: 49-231-1332699; E-mail: bjoern.klink{at}mpi-dortmund.mpg.de.
Submitted April 16, 2002, and accepted for publication July 29, 2002.
| |
REFERENCES |
|---|
|
|
|---|
(II)- to
(I)-helical conversion in bacteriorhodopsin: an infrared spectroscopic study.
J. Phys. Chem. B.
101:9421-9424.
(II) to
(I) on the bacteriorhodopsin photocycle.
Biophys. J.
78:2031-2036
Biophys J, December 2002, p. 3490-3498, Vol. 83, No. 6
© 2002 by the Biophysical Society 0006-3495/02/12/3490/09 $2.00
This article has been cited by other articles:
![]() |
M. Esmann, N. U. Fedosova, and D. Marsh Osmotic Stress and Viscous Retardation of the Na,K-ATPase Ion Pump Biophys. J., April 1, 2008; 94(7): 2767 - 2776. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. C. Partridge, E. M. White, and R. H. Douglas The effect of elevated hydrostatic pressure on the spectral absorption of deep-sea fish visual pigments J. Exp. Biol., January 15, 2006; 209(2): 314 - 319. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Jang, P. S. Crozier, M. J. Stevens, and T. B. Woolf How Environment Supports a State: Molecular Dynamics Simulations of Two States in Bacteriorhodopsin Suggest Lipid and Water Compensation Biophys. J., July 1, 2004; 87(1): 129 - 145. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Friedman, E. Nachliel, and M. Gutman The Role of Small Intraprotein Cavities in the Catalytic Cycle of Bacteriorhodopsin Biophys. J., August 1, 2003; 85(2): 886 - 896. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |