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Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5B7, Canada
Correspondence: Address reprint requests to Nils O. Petersen, Dept. of Chemistry, The University of Western Ontario, London, ON N6A 5B7, Canada. Tel.: 519-661-3812; Fax: 519-661-3139; E-mail: petersen{at}uwo.ca.
| ABSTRACT |
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| INTRODUCTION |
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Currently, there are two theoretical approaches to explaining the diffusion of amphiphilic molecules in lipid bilayers based on the free area theory (Cohen and Turnbull, 1959
; Galla et al., 1979
) and the hydrodynamic continuum theory (Saffman and Delbrück, 1975
; Hughes et al., 1982
; Evans and Sackmann, 1988
; Tamm, 1991
). Both theoretical and experimental work indicates that the diffusion of molecules in the lipid bilayer should be considered in two regimes (Nir and Stein, 1971
). For molecules comparable in size to the solvent molecule, i.e., the phospholipid in the bilayer, the free area theory is the most appropriate model to describe the lateral movement of the diffusant (Derzko and Jacobson, 1980
; Vaz et al., 1982b
, 1984
, 1985a
,b
; Edidin, 1989
). Diffusion of molecules that are large relative to the phospholipid is best explained by the various hydrodynamic continuum models (Chang et al., 1981
; Peters and Cherry, 1982
; Vaz et al., 1982a
, 1984
).
Liu and co-workers (Liu et al., 1997
) examined the effect of size on the lateral movement of lipid analogs within a monolayer using a series of synthetic macrocyclic polyamide amphiphiles. Their data show that there is a transition between the two theoretical approaches for molecules with a cross-sectional surface area (CSA) of
1 nm2 at the bilayer surface. In contrast, the size of the molecule within the membrane interior has no effect on the diffusion (Vaz and Hallmann, 1983
, Vaz et al., 1985a
; Balcom and Petersen, 1993
). Thus, from a diffusion perspective, a membrane may be viewed as having three distinct layers: a surface layer on each side being rigid and restricting lipid movement, and a fluid interior layer (Liu et al., 1997
). This view is consistent with the gradient in sequential motion from the surface to the interior measured by order parameters or relaxation times in magnetic resonance (Seelig and Seelig, 1974
; Petersen and Chan, 1977
; Jacobs and Oldfield, 1981
; Nagle and Tristram-Nagle, 2000
) or fluorescence experiments (Demchenko, 2002
). This triple layer model implies that a transmembrane molecule, because it is impeded equally at each surface, should have a diffusion coefficient that is one-half the diffusion rate of a similarly sized molecule that only spans a single leaflet. Using a membrane-spanning phospholipid, Vaz and co-workers (Vaz et al., 1985b
) showed that diffusion is faster than expected for a transmembrane, lipid-like molecule. This is attributed to a coupling of density fluctuations between the two lipid monolayers in a membrane. The effect is also predicted to depend on the rigidity of the diffusing molecule (Nadler et al., 1985
).
In general, the diffusion behavior of lipids, natural proteins, and peptides in a variety of systems are well-understood, but some ambiguities remain. Although there have been studies on the translational diffusion of membrane protein aggregates (Criado et al., 1982
; Vaz and Criado, 1985
; Kucik et al., 1999
), there has been no analogous study involving a single transmembrane peptide. Do peptide dimers move slower relative to the monomer form? Are there differences between receptors with single or multiple transmembrane domains? We therefore reason that a systematic study of aggregate size and its effect on diffusion of a transmembrane peptide would be instructive.
To address this aim, we prepared the short hydrophobic segment of the b subunit from E. coli F1F0-ATP synthase with a histidine tag at the carbonyl terminus. The peptide forms an
-helical secondary structure with an estimated CSA of 0.5 nm2, established by both computer modeling and heterogeneous Langmuir films. The peptide was also tagged with the fluorescent probe, nitrobenzoxadiazole (NBD), at a lysine residue predicted to be at the membrane surface. Through the histidine tag, we selectively aggregated the peptide with a series of multivalent, dendritic chelating agents containing nitrilotriacetic acid (NTA) groups, to form peptide complexes ranging from monomers to hexamers. The diffusion coefficient for each complex was measured at various temperatures in giant unilamellar vesicles (GUVs) made with either palmitoyloleoylphosphatidylcholine (POPC) or dimyristoylphosphatidylcholine (DMPC).
| MATERIALS AND METHODS |
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Peptide preparation
The nucleic acid sequence encoding for the hydrophobic segment of the b subunit was isolated and amplified by polymerase chain reaction. The restriction enzymes, NdeI and XhoI, were used to cut both the appropriate DNA section for the peptide, and the pET 23b plasmid vector. This commercial vector contains the proper genetic coding for the histidine tag. Afterwards, T4 DNA ligase was used to join the two components to form the chimeric vector. The vector was collected and transformed into a mutant strain of E. coli BL21, C43 (Miroux and Walker, 1996
). The bacteria were grown in 2x YT broth (16 g tryptone, 10 g yeast, and 5 g NaCl in 1 L H2O) with 2 mL of 20 mg/mL ampicillin at 37°C for 12 h. IPTG (isopropyl-1-thio-ß-D-galactopyranoside) was added to the growth to induce the expression of the peptide and the bacteria were cultivated after another 12 h elapsed.
The procedures for the isolation and the purification of the peptide were derived from a method developed by Bligh and Dwyer (1959)
. The bacteria were homogenized in TE buffer (50 mM Tris, 1 mM EDTA, pH = 8) at a concentration of 10 mL buffer per gram of peptide. The bacteria were ruptured using a French press at 20,000 psi and the resulting solution was centrifuged at 10,000 x g for 20 min. The pellet was resuspended in 1:1 CHCl3/MeOH (chloroform/methanol) solution and centrifuged at 3000 x g for 15 min. The peptide was extracted from the solution using two washings of 1% KCl, with the purified peptide appearing as a white solid at the interface. The solid was collected and was resolubilized in a minimum amount of MeOH. The modified peptide is henceforth referred to as Htm-b.
Fluorescent derivatization of the peptide
The prescribed procedure from the FLUOREPORTER kits was used to label the peptide with FITC and RRX. The peptide was also labeled with NBD by combining 2 mL of 0.3 mg/mL purified peptide in its original solution with 1 mg of NBD-Cl. Potassium acetate (1 mg) was added to the solution and the reaction was allowed to proceed for eight hours at room temperature. Further purification of the peptide was not pursued because this led to irreversible aggregation of the peptide. The solution was stored at -20°C until the labeled peptide was required. The various derivatized forms of Htm-b are referred to as FITC-b, RRX-b, and NBD-b.
Langmuir films
Langmuir film experiments were performed on a Kibron µTROUGH S (Helsinki, Finland). The µTROUGH S was placed on a Zeiss (Oberkochen, Germany) AXIOVERT microscope with a 32x long distance lens objective for fluorescence microscopy. The AXIOVERT was also equipped with both a FITC filter set (
ex = 450DF55,
em = 535DF55) and a rhodamine filter set (
ex = 560DF40,
em = 600EFLP). Images were collected using an analog Sony (Tokyo, Japan) CCD video camera module with a CMA-02 camera adaptor and digitized into a computer. Dipalmitoylphosphatidylcholine (DPPC), NBD-labeled phosphatidylcholine (NBD-PC), and RRX-b were combined as a 90:1:9 mixture in 3:1 CHCl3/MeOH solution. The solution mixture was added to the corners of the trough, which was filled with doubly distilled and deionized water, until a surface pressure of 0.5 mN/m was attained. Ten minutes of equilibration was provided before compression of the surface film was applied at a rate of 0.5 Å2/chain/min. When a surface pressure of interest was achieved, the compression was stopped and an image of the monolayer was recorded.
Preparation of peptide aggregates
The methodology for the aggregation of histidine-tagged peptides was developed by Liu et al. (2002)
. Stock solutions of each chelating agent were prepared in millimolar concentrations using doubly distilled and deionized water. The three largest chelating agents required heating for several minutes to dissolve. Stock solutions at 1 mM of either NiCl2 or NiSO4 were used as the source for divalent cations. To coordinate the Ni2+ with the various chelators, the stock Ni2+ solutions and each chelating agent were mixed in appropriate ratios and allowed to equilibrate for one hour. The resulting aggregation agent solutions of micromolar concentrations were stored at 4°C.
The aggregation agents were used as the limiting reagent in mixtures with NBD-b in its CHCl3/MeOH solution to form each complex. The ratios of NBD-b to aggregation agent necessary for successful formation of the specific aggregates were determined in solution with a histidine-tagged hydrophilic protein, thioredoxin (Liu et al., 2002
). The resulting mixtures of NBD-b and aggregation agent, at a final volume of 2 mL, were allowed to sit overnight at 4°C before use.
Vesicle preparation
GUVs of DMPC and the peptide aggregates were prepared at 35°C by the electroformation method (Angelova and Dimitrov, 1986
; Dimitrov and Angelova, 1987
; Angelova et al., 1992
; Bagatolli and Gratton, 1999
) using a homebuilt device (Vanstone, London, ON, Canada). The device consists of two parallel platinum wires (1-mm diameter) held horizontally within a brass ring. Vacuum grease was used to seal an 18-mm diameter glass cover slip at the bottom of the ring to form the chamber floor. The brass ring was used to control the temperature of the chamber through a Cambion Bipolar temperature controller (Cambion Division of Midland Ross, Brampton, ON, Canada).
The solutions used to form the GUVs consist of 0.3 mg/mL phospholipid with either 0.5 mol% NBD labeled phosphatidylethanolamine (NBD-PE) or 0.5 mol% NBD-b in 3:1 CHCl3/MeOH. The latter peptide concentration for the mixture was also used for the formation of GUVs with peptide clusters. Using the prescribed electroformation method resulted in vesicles with a mean diameter of 30 µm.
Diffusion measurements
Diffusion measurements of NBD-b and the peptide aggregates were performed by fluorescence photobleaching recovery (FPR). The system used for this work is a homebuilt system that has been described previously (Petersen et al, 1986
; Liu et al., 1997
). With a 40x water immersion lens, a laser beam radius of 0.92 µm was measured in the focal plane by using the gold edge method in conjunction with a homebuilt microscope stage subassembly (McConnaughey, St. Louis, MO). Vesicles with a minimum diameter of 20 µm were selected for the diffusion measurements. Once a suitable GUV was found, it was aligned along the optical axis and the laser beam was focused on the surface of the vesicle. The FPR measurements and the fitting of the data were performed as reported previously (Edidin et al., 1976
; Axelrod et al., 1976
; Axelrod, 1985
; Petersen et al, 1986
).
| RESULTS |
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The sequence corresponding to the hydrophobic segment of the b subunit is underlined. Residues 4-22 (boldface type) are believed to span the hydrophobic portion of the lipid bilayer (Dmitriev et al., 1999
). Circular dichroism confirmed that, like the native species, our modified peptide adopts an
-helical conformation. The shape of the Htm-b molecule was modeled using HYPERCHEM 6.03 (Hypercube, Gainsville, FL), with the results shown in Fig. 1. From the computer model, it is apparent that Htm-b has a CSA that varies along the length of the molecule and the molecule is not cylindrical. The approximate surface area is estimated as 0.55 nm2, assuming a rotationally averaged cylindrical shape. An experimental, indirect estimate of the CSA for Htm-b was obtained by studying the mixing of phospholipid (DPPC) and fluorescently labeled Htm-b in monolayer systems as a function of pressure. Fluorescent images of a monolayer containing DPPC, RRX-b, and NBD-PC are shown in Fig. 2. In Fig. 2 A, the fluorescent emission from RRX-b shows that at low pressures, the peptide resides in the continuous, liquid expanded (LE) region of the DPPC monolayer. The dark circular regions correspond to liquid condensed (LC) DPPC domains, which exclude the dye labeled peptide and the dye labeled lipid, NBD-PC (Hollars and Dunn, 1998
). As surface pressure increases from 5 mN/m to 30 mN/m, the fluorescence in the LC domains increases relative to the fluorescence in the LE region, indicating an increased relative partition of the peptide into the LC domains (Fig. 2, BE). At 30 mN/m, the pressure estimated for biological membranes (Nagle, 1976
; Liu et al., 1997
; Feng, 1999
; Yuan et al., 2002
), the partitioning of the peptide between the two regions is nearly equal because the domains are no longer distinguishable. Note that the corresponding NBD-PC emission image (Fig. 2 F) shows that the LC domains still exclude the NBD-PC at this pressure and that their number, size, and shape are consistent with previous work. (Peters and Beck, 1983
; McConnell et al., 1984
; Hollars and Dunn, 1998
).
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0.5 nm2 at 30 mN/m (Vaz et al., 1985a
The incorporation of derivatized Htm-b into GUVs of DMPC and POPC was visualized using confocal microscopy. An example of NBD-b incorporation into a POPC GUV is shown in Fig. 3. The fluorescence is clearly confined to the membrane, which, by all accounts, is a single bilayer (Méléard et al., 1997
). The incorporation was confirmed qualitatively by observing fluorescence resonance energy transfer between derivatized phospholipid and labeled peptide at high concentration (data not shown). At Htm-b concentration levels used for the photobleaching measurements, no energy transfer was detected between donor (FITC) and acceptor (RRX) labeled Htm-b when they were mixed in the vesicles. This implies that the peptide does not self-associate at low concentration and thus, only the monomeric species were incorporated in the lipid bilayers under normal conditions.
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A diffusion coefficient interpreted by the interfacial viscosity limited free area theory may be calculated using Eq. 1 (Vaz et al., 1985a
,b
),
![]() | (1) |
is a numerical factor that accounts for free area overlap (
has values between 0.5 and 1.0), a* is the critical free area, a0 is the van der Waals area per lipid molecule,
a is the lateral thermal expansion coefficient in the liquid-crystalline phase, Tm is the main phase transition temperature for the lipid bilayer, and a0ß is the free area at the Tm (Vaz et al., 1985a
In Fig. 5, the calculations assume that
a*/a0 = 0.4, ß = 0.148,
a = 2.3 x 10-3 K-1 and Tm = 23.9°C for DMPC bilayers (Galla et al., 1979
; Vaz et al., 1985a
, 1985b
). The friction coefficient was considered to contain two terms, f = 2f1 + f2, with f1 due to the interaction at the lipid-water interface, and f2 due to the lipid tails within the interior of the membrane. A factor of two is used to account for the peptide being in contact with the aqueous phase on both sides of the bilayer. The friction coefficient at the bilayer-water interface has the form f1 = 4
µwR, where R is the radius of the diffusing particle and µw is the viscosity of water at 35°C. In contrast, f2 is difficult to estimate because it is dependent on both the viscosity within the membrane and the effective size of the phospholipid acyl chains. Thus, f2 was used in our calculation as an adjustable parameter. A value of 5 x 10-11 Ns/m was needed to match the calculations with the experimental diffusion rate. For comparison, f2 =
4 x 10-11 Ns/m for NBD-PE (Vaz et al., 1985a
) and for small lipid analogs (Liu et al., 1997
). Also, f2 for a transmembrane lipid was found to be 15% greater than the value determined for NBD-PE (Vaz et al., 1985b
), which compares favorably with the coefficient determined for our peptide monomers and dimers. Interestingly, the parameters used to describe NBD-PE diffusion could be applied equally for both NBD-b monomers and dimers. Although the interfacial viscosity limited free area theory was designed to describe the diffusion for lipid-like molecules in one leaflet of the bilayer, it appears to describe the diffusion of a transmembrane molecule equally well.
The hydrodynamic model, proposed by Saffman and Delbrück (1975)
, describes the lateral diffusion of a cylinder in a thin viscous sheet, such as a membrane-spanning protein in a lipid bilayer, using Eq. 2.
![]() | (2) |
The parameters, µw and µm, are the viscosities of the surrounding media and the membrane respectively, h is the thickness of the viscous sheet, R is the radius of the diffusant, and
is Euler's constant. The approach proposed by Evans and Sackmann (1988)
for asymmetric membrane environments yield comparable results in this and other systems (Liu et al., 1997
).
The membrane viscosity used for the theoretical calculation is estimated at 1.75 Poise, based on the viscosity of DMPC determined at 32°C (Peters and Cherry, 1982
). As seen in Fig. 5, the results from the Saffman and Delbrück model compares favorably with the experimental data provided a membrane thickness of 3.0 nm is used rather than the 5 nm typically assumed for this calculation (Clegg and Vaz, 1985
; Saxton, 1999
). This suggests that the region(s) of the bilayer that resists movement is thinner than the entire membrane.
The lateral diffusion coefficients of NBD-PE, NBD-b, and the tetramer aggregate were also studied in POPC GUVs at temperatures between 9°C and 35°C. The apparent activation energy for each of the complexes were determined from the resulting linear Arrhenius plots and are listed in Table 1.
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| DISCUSSIONS |
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The general trend in diffusive behavior observed here for a transmembrane peptide and its selectively aggregated complexes parallels that observed by Liu et al. (1997)
with macrocyclic polyamide amphiphiles in monolayers. A discontinuity is observed in both experimental data sets, suggesting that the transition between the two diffusion regimes occurs for molecules with cross-sectional surface areas from 0.8 nm2 to 1 nm2. Interestingly, the results for the trimeric complex appear to be in the transition region, suggesting that both solvent density fluctuations and viscous drag affect the diffusion rate.
Correspondingly, lipid analogs with a 1-nm2 CSA also exhibit intermediate behavior and may therefore also be in the middle of the transition region (Liu et al., 1997
). The difference in activation energy between small and large molecular systems supports the idea that the diffusion is controlled by a different physical process in each of the two size regimes. It is particularly reassuring that corresponding differences are seen with both the monolayer (Liu et al., 1997
) and the transmembrane probes (Vaz et al., 1985b
).
To compare the diffusion of a molecule in a monolayer with one in a bilayer, we examine the ratio of their diffusion coefficients with the predicted ratio, assuming that a simple additive effect predicted by the triple layer model is applicable. Fig. 6 A shows the average diffusion coefficients for small lipid analogs (Liu et al., 1997
) and for peptide monomers and dimers relative to NBD-PE. The lipid analogs diffuse as fast as the lipid, but the transmembrane peptides move at 80% of this rate, rather than at 50% as predicted if the two bilayer leaflets acted independently. Similarly, a higher than expected diffusion coefficient has been observed for a transmembrane lipid probe, which was reported to move at
65% of the lipid rate (Vaz et al., 1985b
).
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Fig. 6 B shows the average diffusion coefficients of large lipid analogs (Liu et al., 1997
) and for the peptide tetramers, pentamers, and hexamers relative to the NBD-PE diffusion rate. The data emphasize that the larger molecules move more slowly, but once again, the transmembrane clusters diffuse more rapidly than predicted if viscosity effects within the membrane were simply additive. This effect, which is less pronounced for these complexes than for the monomers or the dimers, has not been observed before. There are two possible rationales. First, it is possible that the large lipid analogs are moving relatively slower because of interactions between the two monolayers, leading to the lower predicted value for the transmembrane unit. Second, the transmembrane peptide complexes may be sufficiently flexible and porous to allow lipids to diffuse in and out of their molecular structures.
In summary, the diffusion of a molecule with CSA comparable to the lipid solvent is governed by density fluctuations, whether it resides in a single monolayer only or traverses the entire bilayer. The activation energies are comparable, suggesting that the same fundamental physical forces control the diffusion. The relatively fast diffusion of the transmembrane peptide monomer and dimer suggests that the density fluctuations in one monolayer induce fluctuations in the other, enhancing the probability for a diffusive hop. Correspondingly, a molecule with CSA above
1 nm2 moves more slowly than the lipid, whether they reside in a monolayer only or span the bilayer. The activation energies are smaller for these molecules, confirming that different physical forces regulate their diffusion rates.
This work raises several biologically relevant issues. Membrane proteins often have either one transmembrane domain, as in tyrosine kinase receptors, or seven transmembrane domains, as in G-protein coupled receptors. Our data suggest that this difference in tertiary structure alone will segregate these membrane proteins into two different diffusion classes as well. The importance of having a single transmembrane domain versus seven transmembrane domains could therefore relate to the speed with which proteins can interact and initiate a signal transduction event. The diffusion rates for monomers and dimers of single transmembrane proteins are the same. Correspondingly, the diffusion rates for monomers and dimers of the larger multiple transmembrane proteins would be the same. This implies that simple dimerization of receptors of either type during signal transduction would not alter their diffusion rate and hence, should not be a rate limiting factor for subsequent diffusion dependent processes.
Although the relation between degree of aggregation and diffusion rate is clear in these model membranes, it remains true that cell membranes are structurally heterogeneous. Protein-protein (Duband et al., 1988
; Jans, 1997
; Colledge and Scott, 1999
; Garner et al., 2000
) and protein-lipid interactions (Pierce, 2002
; Zacharias et al., 2002
), confinement due to the cytoskeleton (Tsuji and Ohnishi, 1986
; Tsuji et al., 1988
; Kusumi et al., 1993
; Kusumi and Sako, 1996
; Sako and Kusumi, 1994
, 1995
), and lipid rafts (Glaser, 1993
; Brown and London, 1998a
,b
; Ikonen, 2001
) are all examples of membrane heterogeneity which may affect the long distance diffusion dynamics within the lipid bilayer. Nevertheless, it is possible that the dynamics of protein-protein interactions over short distances within domains is controlled by the diffusion processes described in this work.
| ACKNOWLEDGEMENTS |
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The work was supported by an operating grant from the Natural Sciences and Engineering Research Council, Canada (NOP).
| FOOTNOTES |
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Submitted on July 26, 2002; accepted for publication September 23, 2002.
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