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* Biophysics Research Division,
Institute of Gerontology, and
Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109
Correspondence: Address reprint requests to Dr. Ari Gafni, Biophysics Research Div., University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109-1055. Tel.: 734-936-2156; Fax: 34-936-2116; E-mail: arigafni{at}umich.edu.
| ABSTRACT |
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| INTRODUCTION |
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HIAPP is one of a growing number of proteins and peptides that are classified as amyloidogenic, referring to the amyloid plaques formed by their deposition as highly ordered aggregates in the tissues of persons affected by one of a variety of diseases. The mechanism of fibril formation and the general structure of the fibrils are thought to be common to all amyloidogenic proteins. The initial aggregates formed are slender, unbranched fibers that range from 3- to 8-nm in diameter and up to several 100-nm in length (Goldsbury et al., 1997
; Harper et al., 1997b
). Atomic force and electron microscopies have been used to follow the self-assembly of the elementary fibrils to form a variety of differently structured mature fibrils, dependent upon such factors as solvent conditions and the particular amyloidogenic protein involved (Charge et al., 1995
; Goldsbury et al., 2000
; 1997
; Harper et al., 1997a
,b
). The mature fibrils are characterized by intermolecular antiparallel ß-sheets, oriented roughly perpendicular to the axis of the fibers, as seen with circular dichroism, nuclear magnetic resonance, and x-ray diffraction (Blake and Serpell, 1996
; Cohen and Calkins, 1959
; Cort et al., 1994
; Griffiths et al., 1995
; Kirschner et al., 1986
; Sunde et al., 1997
).
To gain a full understanding of the process of amyloid formation, it is crucial not only to characterize the structure of the fibrils, but also to develop a kinetic model that describes how these fibrils are formed. There is significant evidence that amyloid fibril formation is a nucleation-dependent process (Ashburn et al., 1992
; Jarrett and Lansbury, 1992
, 1993
; Lomakin et al., 1996
) (depicted in Fig. 1 A) and thereby resembles other ordered protein aggregation processes such as protein crystallization (Blow et al., 1994
), sickle cell hemoglobin polymerization (Mirchev and Ferrone, 1997
), and viral coat protein assembly (Schuster et al., 1979
). The nucleation-dependent aggregation process is initiated by the forming of a nucleus, defined as the smallest, marginally stable, structured aggregate created by the concerted association of monomers. Because there is a high entropic barrier to nucleation, it is the rate-limiting step in the aggregation process, giving rise to a distinct lag time before aggregation is initiated. However, once a nucleus is formed, the addition of monomers to the growing aggregate is favorable (in Fig. 1 A, Kb >> Ka) and aggregation proceeds rapidly. Since nucleation is a high-order reaction, it is expected to depend strongly upon the concentration of the protein. More precisely, for a nucleus consisting of j-monomers, the lag time is expected to be inversely proportional to the total protein concentration to the (j + 1)th power (Oosawa and Kasai, 1962
). Thus, small changes in the total protein concentration result in dramatic changes in the aggregation lag time, even for nuclei consisting of only three or four monomers. A striking example is the initiation of sickle cell hemoglobin polymerization, which is highly concentration-dependent, so that a twofold dilution of the protein concentration prolongs the lag time some 10-billionfold (Ferrone et al., 1985
). The lag phase can be eliminated by the addition of preformed nuclei, or seeds, to a monomeric protein solution.
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In our previous work, we focused on characterizing the initiation of aggregation of a fragment of hIAPP in terms of its lag time before detectable aggregation occurs (Rhoades et al., 2000
). We found that for a wide range of peptide concentrations,
5 µM150 µM, under conditions where we were confident that our initial solutions contained only monomeric peptide, the lag time was independent of the total concentration of the peptide, in direct contradiction to what is predicted for nucleation dependent aggregation. To explain our observations, we developed a modified model of nucleation-dependent aggregation, shown in Fig. 1 B. In this model, off-aggregation-pathway peptide micelles are formed at peptide concentrations greater than the critical micelle concentration (CMC). The formation of micelles helps maintain the monomer concentration at the CMC since whenever the total peptide concentration exceeds the CMC, all excess peptide is incorporated into micelles. Nuclei are formed only from monomeric peptide interactions, as in the classic nucleation-dependent aggregation model (Fig. 1 A), and thus nucleation depends only on the concentration of monomeric peptide. Therefore, for concentrations greater than the CMC, the lag time does not exhibit a dependence upon the total protein concentration. If the micelles were on-pathway (i.e., they give rise to nuclei), then we would expect to see some dependence of the lag time upon the peptide concentration, as explained in the following. An increase in the peptide concentration results in an increase in the number of micelles in solution. A higher concentration of micelles results in more rapid nucleus formation, and a consequent decrease in the lag time to aggregation. However, as we do not see a dependence of the lag time upon the concentration of peptide, then the micelles must be off-pathway. Further evidence that our model may serve as the basis for a general one describing amyloid aggregation comes from recent kinetic studies which show that the aggregation of full-length hIAPP (Padrick and Miranker 2002
), as well as prion protein Sup 35 (Serio et al., 2000
), are concentration-independent.
The presence of off-pathway peptide micelles is a key, but hitherto unproven, component of our hIAPP aggregation model (Fig. 1 B). Thus, the aim of this study was to experimentally test for the presence of hIAPP micelles in solution using approaches that have been previously applied for the characterization of conventional micelle-forming solutions. It is well established that many physiochemical properties of such solutions change abruptly at the CMC (Hiemenz and Rajogopalan, 1997
), including but not limited to: light scattering, viscosity, surface tension, absorption, fluorescence, conductivity, and pH. To determine the CMC of a micelle-forming substance, one of these properties is monitored as a function of concentration and a change in the slope of the plot made from the data marks the CMC.
In the study presented here, we confirm the presence of micelles formed by hIAPP fragments in solution, and determine the CMC with three independent techniques: conductivity, pH, and fluorescence intensity. Three fragments of hIAPP were used: amino acids 2030 (hIAPP 2030), 2029 with a tryptophan (Trp) at the carboxyl terminus (hIAPP 2029-Trp), and 2029 with a fluorescein at the amino terminus (hIAPP fluo-2029). Previous studies have established that hIAPP fragments containing residues 2029 may serve as suitable model systems for in vitro amyloid formation since these fragments are capable of forming amyloid fibrils in vitro that are indistinguishable from (and exhibit many of the amyloidogenic characteristics of) fibers formed by the full-length peptide (Fig. 1 C) (Ashburn et al., 1992
; Charge et al., 1995
; Glenner et al., 1988
; Westermark et al., 1990
). The tryptophan and fluorescein groups were added to two of the fragments to serve as fluorescent probes of the carboxyl and amino termini, respectively.
| MATERIALS AND METHODS |
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5 and 150 µM, and characterized by a lag phase of
40 h before detectable aggregation. This behavior corresponds to our previously published data (not shown) (Rhoades et al., 2000The hIAPP fragments were dissolved in 100% dimethyl sulfoxide (DMSO) to create stock solutions of 20 mM. The stock solutions were stored at -20 C. When needed, the necessary amount of peptide was removed from the DMSO stock and diluted into 25 µM KCl. The concentration of DMSO is 0.1% throughout all the experiments, which did not affect the aggregation of the fragments (data not shown). The solutions were filtered through a 0.2-µm Acrodisc syringe filter (Pall Gelman Sciences, Ann Arbor, MI) to remove dust and other particulate matter.
Conductivity measurements were made using a Cole-Parmer Digital conductivity meter, with a gold-plated dip cell with a built-in thermistor (Vernon Hills, IL). The pH of the solutions was measured indirectly by using a pH-sensitive dye, Bromcresol Purple (BP), from Sigma Chemical Company (St. Louis, MO). The absorption spectrum of BP changes over a range of pH 5.26.8 which we found to be suitable for our experiments. Absorption measurements of the BP/hIAPP fragment solutions were made with a Shimadzu UV-Vis spectrophotometer and the ratio Abs587/Abs430, which is particularly sensitive to pH changes, was used. Fluorescence emission measurements of hIAPP 2029-Trp and hIAPP fluo-2029 were made with a Spex model Fluorolog II fluorimeter. The hIAPP 2029-Trp was excited at 290 nm and the emission from 300 to 400 nm was recorded. The hIAPP fluo-2029 was excited at 465 nm and the emission collected from 475 to 600 nm. All measurements were made at room temperature.
A 20-µM solution of the appropriate hIAPP fragment was prepared by diluting 1 µl of the 20-mM stock solution into 1 mL of 25 µM KCl. As we mention in the Introduction, our previous work characterized the aggregation of hIAPP fragment solutions over a range of concentrations for 5 µM to 150 µM, finding that these solutions remained kinetically soluble for a period of
40 h. However, these solutions were prepared by diluting the stock solutions of hIAPP fragments in DMSO into 10 mM sodium phosphate buffer pH 7, with 10 mM NaCl. For the studies presented here, we use ddH2O rather than buffer, as buffer interferes with both the conductivity and pH measurements. Thus we chose 20 µM as the highest peptide concentration because it was determined that this value represents the solubility limit of the hIAPP fragments in pure ddH2O. Higher concentrations of peptide diluted into ddH2O resulted in irreproducible behavior, and often in rapid, visible, insolubilization of the peptide. The measurements of conductivity, absorption, and fluorescence were carried out in one of the following two ways: 1), A measurement of the signal from a peptide solution was made, then the sample was diluted to the next desired concentration with 25 µM KCl/0.1% DMSO. And 2), Each concentration was prepared by direct dilution of the initial 20 µM peptide solution to the desired concentration and each sample was then measured. Both methods gave comparable, reproducible results. The dilutions were repeated until the concentration was too low for reproducible measurements to be obtained. For the absorption studies, 2 µL of a 5-mM stock of BP were added to 1 mL of the 20-µM peptide solution, for a final dye concentration of 10 µM. These samples were diluted with 25 µM KCl/0.1% DMSO/10 µM BP. We observe that solutions of 20 µM hIAPP in ddH2O or 25 µM KCl are kinetically soluble (i.e., no detectable seeds or aggregates form) for close to 40 h. As all measurements were made within an hour after diluting the peptide stocks into aqueous solution, we do not expect seed formation or aggregation to be an issue for either serially diluted or directly diluted solutions.
| RESULTS |
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40 h for the hIAPP fragment, confirming that the solutions were initially free from nuclei and other amyloidogenic material.
Fig. 2 shows the conductivity of hIAPP 2030 solutions as a function of peptide concentration. The CMC, which is particularly clearly marked by a change in slope from positive to negative (see Discussion), is
3.5 µM. As will be discussed later, the shape of the conductivity curve of hIAPP 2030 in 25 µM KCl resembles the conductivity curve of sodium dodecyl sulfate (SDS), a well-characterized micellar system, in 6 mM HCl. The conductivity of solutions of rIAPP 2029 (which does not aggregate) was measured as a control, with no evidence of micelles observed (data not shown).
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3 µM, in very good agreement with the conductivity data. Although the data is plotted as absorbance ratio of BP, these values correspond to the changing pH of the solutions, i.e., an increase in the absorbance ratio corresponds to a decrease in solution pH. It is clear from Fig. 3 that the slope of the absorption ratio versus peptide concentration is larger above the CMC than below this value. This indicates that the pH decreases more rapidly at concentrations above the CMC, where the micelle concentration increases with increasing peptide concentration while the monomer concentration remains constant. The micellization, therefore, is associated with an increase in H+ ions released into solution. If the change in pH observed for hIAPP 2030 solutions were merely due to a change in the ionic strength of the unbuffered solution (due to, for example, an increase in the amount of salt from the lyophilized peptide, proportional to the increasing amount of peptide), then one would expect the relationship between concentration and pH to be a simple linear one.
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3 µM peptide, also in very good agreement with both the conductivity and pH measurements. Furthermore, as the fluorescein serves as a probe of the amino terminus of the peptide, this data indicates that this terminus experiences a change in its environment upon micellization.
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| DISCUSSION |
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3.5 µM for hIAPP 2030 in 25 µM KCl. As mentioned in Results, the shape of the curve closely resembles that of SDS in 6 mM HCl, for which equations have been derived and presented by Dominguez and co-workers (Dominguez et al., 1997
It is also important to mention that due to the nature of the hIAPP fragments, we were limited in the parameters we could vary in our conductivity measurements. As described in Materials and Methods, the solubility limit of hIAPP 2030 in 25 µM KCl is
20 µM. Thus we were not able to measure the conductivity of solutions at higher concentrations, although we expect that the value should resume its increase. Additionally, we were unable to vary the KCl concentration substantially. At higher concentrations of KCl, the conductivity of this salt overwhelms that of the hIAPP fragments. We did attempt to measure the conductivity of hIAPP 2030 in solutions with very low (5 µM) or no KCl. Though we found that these measurements were somewhat irreproducible (most likely due to the low concentrations of ions), the overall shape of the plots resembled conductivity plots of SDS in the absence of HCl: a line with a positive slope that changes at the CMC, to a line with a slightly lower, but still positive, slope (data not shown). Thus, the behavior of hIAPP 2030, as measured by conductivity, in the absence and presence of KCl appears to be very similar to that of SDS in the absence and presence of HCl. This confirms that our conductivity measurements indeed report on the presence of hIAPP micelles in solution.
Though in Fig. 1 B we depict the micelles as resembling traditional amphipathic structures, at present we do not have a physical model for the overall shape or size of the micelles. We thus use the term "micelle" to loosely describe the structures formed by rapid, reversible, nonfibrillar oligomerization of the hIAPP fragment. During amyloid formation, as monomer peptide is depleted by being incorporated first into nuclei and then into growing fibrils, the micelles disassemble. The term "micelle" has been used to describe oligomeric structures formed by other amyloidogenic peptides. Before our work, Lomakin and co-workers used the term "micelle" to describe on-pathway oligomeric intermediates formed by the Alzheimer's Aß peptide that give rise to nuclei and then fibrils (Lomakin et al., 1996
, 1997
). More recently, Serio and co-workers describe off-pathway oligomeric structures formed by the prion protein Sup35 as "micellelike" in their kinetics (Serio et al., 2000
). Initial studies by both Harper et al. (1997b)
and Walsh et al. (1997)
proposed that one possible role for the oligomeric structures formed by Aß, termed protofibrils, is to serve as off-pathway peptide reservoirs, kinetic entities much like our micelles. Thus, we use the term as a useful kinetic description and not necessarily to imply that the hIAPP 2029 forms traditional micellar structures. We also use the term to emphasize the difference between off-pathway oligomers (the micelles) and other small oligomers, such as seeds or small aggregates that are found on-pathway.
The CMC we measured with conductivity was confirmed by pH/absorbance and fluorescence intensity measurements, both showing the CMC to be
3 µM. In addition to corroborating the conductivity measurements, these two techniques also yield some information about the structure of the micelles. From the pH/absorption we can determine that solutions of hIAPP 2030 (pKa
5.5) in 25 µM KCl are increasingly more acidic with increasing peptide fragment concentration. Above the CMC, the pH decreases more sharply, as indicated by an increase in the slope of the plot of BP absorbance versus hIAPP 2030 concentration (Fig. 3). The increasing acidity indicates that enhanced release of H+ ions into solution occurs upon micellization, an effect that has been previously observed with other micelle-forming peptides (Kumar et al., 1996
; Mandal and Jayakumar, 1994
). Because the fragment hIAPP 2030 does not contain any titratable side groups (see Fig. 1 C for the amino acid sequence of hIAPP), the only likely candidates for deprotonation are the terminal amino and carboxyl groups. At neutral pH, the carboxyl groups (pKa
3.1) are fully deprotonated, making the amino terminus the likely proton donor. A plausible explanation of this observation is that upon micellization, the amino termini of the peptide fragments come into close proximity with each other, resulting in a decrease of the pKa of the NH3+ groups with consequent partial deprotonation of these groups, and a decrease in the pH of the solution.
The fluorescently-labeled peptides provide further evidence for the involvement of the amino terminus in the micellization. hIAPP fluo-2029 and hIAPP 2029-Trp were used to probe the environments of the amino and carboxyl termini, respectively, of the peptide. The linear relationship between the Trp fluorescence intensity and the peptide concentration indicates that the environment of the carboxyl terminus does not change significantly upon micellization. Time-resolved fluorescence anisotropy data of hIAPP 2029-Trp (data not shown) displays an extremely rapid decay, indicating that the Trp has free rotational movement in solution, and therefore that the carboxyl terminus is solvent-exposed. Conversely, the fluorescence of hIAPP fluo-2029 indicates that the amino terminus does undergo a change of environment upon micellization. It is well known that fluorescein emission intensity sharply decreases upon removal from aqueous to less polar solvents. The data in Fig. 4 show that the fluorescence intensity per unit of hIAPP fluo-2029 decreases above the CMC, as evidenced by a decrease in the slope of the plot. An explanation for this decrease is that the environment of the amino terminus in the micelle is not as polar as the environment of the amino terminus free in solution. This is expected if the amino terminus is internalized into the micelle. Thus, the model we propose for hIAPP fragment micelles based on our pH and fluorescence data has the amino terminus incorporated into the interior of the micelle, bringing the amino termini of adjacent peptides into proximity of each other, as well as into a hydrophobic environment, thus resulting in deprotonation of the NH3+ groups.
One major area of interest is the characterization of the size of the micelles; however, this has proven to be challenging primarily due to the heterogeneity and small size of these structures and the need to work with low concentrations of the small peptide. Thus, although we were able to visualize the fibrils formed by the hIAPP fragments (by electron microscopy), we were not able to visualize the micelles, which are dynamic, polydisperse structures in rapid equilibrium with monomeric peptide. By their nature, the micelles are sensitive to changes in their environment and may disassemble upon contact with the electron microscopy substrate, due to changes in local monomer concentration. Another classical method for characterizing protein self-association, dynamic light scattering, has also proven inadequate for characterizing the structures formed by hIAPP 2030. Even at a concentration of
200 µM hIAPP 2030 (
0.22 mg/mL; this concentration is used because, as noted in our previous workRhoades et al. (2000)
it is close to highest concentration at which we observe reproducible aggregation and represents the solubility limit of hIAPP 2030 diluted from DMSO into a neutral aqueous solution) we were unable to obtain a correlation signal for the micelles, indicating that the maximum concentration is still far too low to be detected by light scattering. Additionally, we hypothesize, based on the detection limit of our turbidity studies, that the micelles are composed of not more than 50 monomers, and thus their diffusion may be too rapid to be detected by the correlator.
We show in this work that are able to measure the CMC of hIAPP fragment micelles using techniques well-established for characterizing micellar systems, indicating the potential to use such methods for the study of peptidal systems. It is particularly noteworthy that the CMC value of 33.5 µM that we have measured by three independent techniques is in agreement with two of our original observations regarding hIAPP fragment aggregation (Rhoades et al., 2000
). First, reproducible, concentration-independent aggregation occurs at concentrations greater than
5 µM peptide. Second, the critical concentration for hIAPP 2029 aggregation, Cc, was measured by us to be
1 µM. Thus, we expect that the CMC should fall in between these measured values, which is indeed where it is found. Current efforts in our lab are being made to characterize the concentration-dependence of hIAPP fragments at sub-CMC concentrations.
References to the in vitro nonfibrillar oligomerization of amyloidogenic proteins have long been found in the literature, describing species ranging in size from dimers to large, amorphous structures (Garzon-Rodriguez et al., 1997
; Harper et al., 1997b
; Huang et al., 2000
; Levine, 1995
; Lomakin et al., 1996
; Tjernberg et al., 1999
; Walsh et al., 1997
). However, it is only relatively recently that a possible functional role for amyloid oligomers in amyloid disease pathology has been proposed based on growing evidence from in vivo studies. In particular, these studies have revealed that the toxic forms of several amyloidogenic peptides (including hIAPP) are oligomeric structures, rather than the fully aggregated amyloid fibrils as originally thought (Bhatia et al., 2000
; Johnson et al., 1988
; Lambert et al., 1998
; Zhu et al., 2000
). The studies showed that freshly prepared peptide solutions are cytotoxic, indicating the immediate presence of oligomeric species in solution. Earlier studies indicated that the fibrils themselves were the cytotoxic form of amyloid peptides (Fraser et al., 1994
; Lorenzo et al., 1994
). However, as the importance of nonfibrillar oligomeric species was not recognized at the time, no care was taken to separate this material from the fibrils, and the cytotoxic preparations probably contained a mixture of fibrillar and nonfibrillar oligomers.
Also of interest is a recent study of two mutants of the amyloidogenic protein,
-synuclein, that are linked to early-onset Parkinson's disease (Conway et al., 2000
). This study compared the aggregation of these two mutants with the wild-type protein and found that the common property of the mutants was not the rate of fibrillization, but the rate of nonfibrillar oligomerization, which was more rapid for both of the mutants than the wild-type. The studies mentioned above raise the possibility that amyloid fibrils and plaques are relatively harmless products, while the nonfibrillar oligomers cause most of the damage to the cells. If this idea is borne out, therapeutic techniques, which have thus far been aimed at the prevention of fibril formation, may instead focus on preventing the formation of micelles by amyloidogenic peptides.
The present study utilized an amyloidogenic fragment of hIAPP and the question of the biological relevance of a model based on this fragment is an important one. We thus use caution in drawing any conclusions of biological significance based on our simplified in vitro model. As noted in the Introduction, fibrils formed by hIAPP 2029, as well as shorter hIAPP fragments within the 2029 region, are indistinguishable from those formed by full-length hIAPP 137 (Ashburn et al., 1992
; Azriel and Gazit, 2001
; Charge et al., 1995
; Glenner et al., 1988
; Westermark et al., 1990
). Additionally, it was recently shown that preparations of these shorter sequences, hIAPP 22-27 and hIAPP 20-27, as well as hIAPP 20-29, are cytotoxic to rat insulimona cells (Tenidis et al., 2000
). Based on these observations, we cannot state with certainty that the aggregation behavior of the fragment is the same as the full-length peptide, but it is clear that it can serve as a useful model in understanding the mechanism underlying amyloidogenesis. It is interesting to note that a number of recent studies of hIAPP and Aß aimed at inhibiting their aggregation used short, 512 amino acid, regions of these peptides with great success (Ghanta et al., 1996
; Hughes et al., 2000
; Scrocchi et al., 2002
; Soto et al., 1996
). While evidence accumulates pointing toward nonfibrillar oligomers rather than fibrils as the cytotoxic culprits, raising the question whether preventing amyloid formation is the ultimate goal of therapeutics, all these studies nevertheless demonstrate that the short peptides do provide good target sequences for any studies aimed at understanding, or controlling, the aggregation process.
Despite the great effort put into characterizing the aggregation of amyloidogenic proteins, the process is still not well understood and no kinetic model exists which can serve as a general description of amyloidogenesis. In the present study we present experimental evidence for the formation of micelles by fragments of hIAPP, an observation that strongly supports our previously proposed model for the aggregation of these peptides, which postulates off-pathway peptide micelles. Current efforts in our laboratory aim at further characterization of the micelles as well as obtaining deeper insight into hIAPP fragment aggregation.
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Submitted on September 10, 2002; accepted for publication December 9, 2002.
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