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* Department of Physics and Astronomy, Rice University, Houston, Texas;
Department of Nuclear Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts; and
Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois
Correspondence: Address reprint requests to Dr. Huey W. Huang, Dept. of Physics and Astronomy, Rice University, Houston, TX 77251-1892. Tel.: 713-348-4899; Fax: 713-348-4150; E-mail: hwhuang{at}rice.edu.
| ABSTRACT |
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) which is the space-time Fourier transform of the electron density correlation function of the measured system. For a multiatomic system, the analysis of S(q,
) is usually complicated. But for multiple bilayers of lipid, S(q,
) is dominated by chain-chain correlations within individual bilayers. Thus IXS provides a unique probe for the collective dynamics of lipid chains in a bilayer that cannot be obtained by any other method. IXS of dimyristoyl phosphatidylcholine and dimyristoyl phosphatidylcholine + cholesterol at two different concentrations were measured. S(q,
) was analyzed by three-mode hydrodynamic equations, including a thermal diffusive mode and two propagating acoustic modes. We obtained the dispersion curves for the phonons that represent the collective in-plane excitations of lipid chains. The effect of cholesterol on chain dynamics was detected. Our analysis shows the importance of having a high instrument resolution as well as the requirement of sufficient signal-to-noise ratio to obtain meaningful results from such an IXS experiment. The requirement on signal-to-noise also applies to molecular dynamics simulations. | INTRODUCTION |
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), which is the space-time Fourier transform of the electron density-density correlation function of the measured system. The technique is complementary to the long-existing inelastic neutron scattering (INS) that measures the coherent scattering-length density correlations (Bacon, 1975
In this article we report and discuss the collective chain dynamics in lipid bilayers measured by IXS. As it will become clear below, the interpretation of data is complicated for multiatomic systems, but lipid bilayers turn out to be an ideal system for IXS for two reasons. The first reason is that phospholipids in water spontaneously form multilamellae, but there are no correlations between lipid molecules residing in different bilayers. This was rigorously demonstrated first by Smith et al. (1990)
on dimyristoyl phosphatidylcholine (DMPC). Let the momentum transfer of x-ray scattering be q. qz is along the bilayer normal and qr is the in-plane component. Smith's group measured the diffraction intensities of freely suspended DMPC multilayers around the chain-chain (paraffin) peaks near qr
14 nm-1. They found that the qz-dependence of the chain-chain peaks was that of a single bilayer, containing no interference from neighboring bilayers. Even in the gel phase, the individual chains are positionally uncorrelated from one bilayer to the next. The second reason that lipid bilayers are ideal for IXS studies is that in the same study by Smith's group, it was found that headgroup of the lipid did not contribute to the chain-chain peaks. This means that although the chains of neighboring lipid molecules in the same bilayer were correlated, their headgroups were not. The experiment of Smith et al. (1990)
was repeated in our laboratory (Yang et al., unpublished results) with substrate-supported multilayers of various lipids, and the same conclusions were reached. A simple demonstration of the fact that the chains are not correlated between bilayers is the observation that the chain-chain diffraction pattern obtained by in-plane scattering from oriented multilayers (He et al., 1993
) is the same as obtained from a powder (i.e., multilayered vesicles) sample. This is an important point because it allows us to measure in-plane chain dynamics using powder samples that are much easier to prepare than a large oriented sample.
Since lipid chains are hydrocarbons and hydrogen has negligible contribution to x-ray diffraction, coherent x-ray scattering in the q-region beyond the lamellar peaks is dominated by carbon-carbon correlations from the lipid chains. In this region of q, IXS measures the dynamic carbon-carbon in-plane correlation functions. From the measured S(q,
), we will deduce the collective dynamics of lipid chains, including a thermal diffusive mode and propagating acoustic modes. In particular, we will analyze the dispersion curves of the phonons that represent the collective in-plane excitations of lipid chains (a brief report was published in Chen et al., 2001
, and Liao and Chen, 2001
). Thus IXS provides a unique probe for the collective dynamics of lipid chains in bilayers that cannot be obtained by any other method. DMPC and DMPC + cholesterol at two different concentrations were measured for this experiment. The effect of cholesterol on chain dynamics was observed.
As the synchrotron radiation instrument continues to improve, IXS will undoubtedly become a common technique. One of the strongest incentives for such experiments is that the dynamic range of IXS is comparable to the current molecular dynamics (MD) simulations. IXS is one experiment with which MD can make direct comparison. Indeed MD can also generate S(q,
) at a comparable quality of the current IXS instruments (Tarek et al., 2001
). Thus the analysis presented here is applicable to both IXS and the MD results.
Although the theoretical basis of IXS analysis is quite well-known (Boon and Yip, 1980
; Alley and Alder, 1983
; de Schepper et al., 1988
; Balucani and Zoppi, 1994
), we believe it is useful to recapitulate it here at the level of this journal so as to make our results transparent. We found the data analysis for the bilayer experiments highly nontrivial, mainly due to the limitations of the signal-to-noise ratio and the instrumental resolution that could be achieved in practice today. Our analysis points to an important requirement on the instrument resolution and the signal-to-noise ratios. The requirement on the signal-to-noise ratio should also apply to MD simulations.
We believe that the chain dynamics revealed by IXS are closely related to molecular transport across lipid bilayers. It has long been established that the permeabilities of lipid bilayers to various molecules and ions are significant (e.g., Paula et al., 1996
; Haines, 2001
), yet the cell must maintain molecular gradients across the plasma membrane for its vital functions. Interesting ideas, including MD simulations, have been proposed to relate chain dynamics to permeabilities (Nagle and Scott, 1978
; McKinnon et al., 1992
; Marrink and Berendsen, 1994
; Jansen and Blume, 1995
; Paula et al., 1996
; Haines, 1994
, 2001
). Some of these ideas should be correlated with IXS analysis.
In the following, this article will be divided into a brief description of the IXS spectrometer, data collection, theory of collective dynamics, method of data analysis, error treatment, and results and discussion.
| EXPERIMENT |
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The spectrometer works in a reverse mode, which means that the energy of the incident beam is changed while the scattered radiation is being detected at constant energy. The photon flux at the sample was
5 x 108 photons/s at a current of 100 mA in the storage ring. The q resolution ± 0.3 nm-1 was determined by the acceptance angle of the analyzer. The spectra were typically taken in the range of
from -25 meV to +25 meV with a step size of 0.25 meV at a scan rate of 20 s per point. Thus a full energy scan lasted
70 min. For each q, 68 energy scans were collected and subsequently averaged for analysis. The background signal of the empty sample chamber was also measured and subtracted from the sample data.
The energy resolution of the spectrometer was measured using a Plexiglas cylinder as a sample. Plexiglas acts as a purely elastic scatterer with a negligible width in the elastic peak, thus its spectrum represents the energy resolution function of the instrument. In the case of the IXS spectrometer at the APS, this spectrum can be well-approximated with a mixture of a Gaussian and a Lorentzian lineshape, sometimes called the Pseudo-Voigt function:
![]() | (1) |
= 1.90 and
= 0.50. In the following we will call this spectrum R(
), the instrument resolution function.
1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) was purchased from Avanti Polar Lipids (Alabaster, AL). Cholesterol was purchased from Sigma Chemicals (St. Louis, MO). The hydrated multilamellar lipid samples were made following the protocol given in Olah et al. (1991)
. Each sample contained
50 mg pure lipid. Cholesterol was added at the desired molar ratio to the lipid dissolved in chloroform. The chloroform was blown off under a stream of dry nitrogen and the sample was subsequently dried under vacuum at
10 µm Hg for 24 h, to remove all residual solvent. Then 23 ml of distilled water was added and the suspension was vortexed vigorously for
5 min, and then homogenized using a sonicator for
15 min to break up larger aggregates. Afterwards the suspension was quick-frozen using dry ice. The frozen suspension was dried again under vacuum for 24 h. This resulted in a fluffy white powder. The powder samples were then kept at 35°C inside a sealed jar, which had water at the bottom to keep the air inside at 100% relative humidity. The hydration process took 12 weeks. The fully hydrated samples had the appearance of a soft transparent gel.
For IXS measurement, the sample was held on a small glass slide put inside a sample chamber with beryllium windows. The sealed chamber contained a small water reservoir to keep the sample fully hydrated during the course of measurement. Its temperature was controlled using a temperature controller (LFI-3500, Wavelength Electronics, Bozeman, MT). The chamber was mounted on a positioning stage to accurately center the sample into the beam. The pathlength through the sample was
10 mm, which corresponds approximately to the absorption length of the lipids for the x-ray energy (21.657 KeV) used.
| THEORY FOR IXS OF LIPID BILAYERS |
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![]() | (2) |
and
are, respectively, the momentum, energy, and polarization of the incident and the scattered photon, (q,
) are defined as
, and r
(t) is the position of the
th electron at time t. The bracket
implies a thermal ensemble average. The sum over electrons labeled by
can be written as a sum over atoms labeled by
by introducing the atomic form factor f
(q):
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As explained in the Introduction, we anticipate the coherent scattering being dominated by the carbon atoms of the lipid chains. Let fc(q) be the atomic form factor of carbon and N the total number of carbon atoms in the sample. We define the dynamic structure factor, S(q,
), by
![]() | (3) |
![]() | (4) |
is the number density of carbon atoms at position r and time t. We propose that the dynamics governing
can be described by hydrodynamic equations generalized to large values of q (Boon and Yip, 1980
, where
is the particle size. However, it has been argued (Boon and Yip, 1980
<< 1, where
is the mean free path, rather than q
<< 1. In fluids,
is considerably smaller than
, so the hydrodynamic description can be extended to q-values much higher than what is expected from intuitive considerations. The validity of generalized hydrodynamics has been demonstrated by the simulation results of hard spheres (Alley and Alder, 1983
For the sake of clarity, we briefly recapitulate the basis of the generalized hydrodynamic equations. This is most comprehensible by considering first the case of no energy dissipation. We will consistently keep only the linear terms and start with three equations: Eq. 5.1, the equation of continuity,
![]() | (5.1) |
![]() | (5.2) |
![]() | (5.3) |
is the momentum density, p the pressure, s the entropy, and T the temperature. In the absence of dissipation, ds is zero. If we expand dp in Eq. 5.2 by
, we now have three equations in three variables, i.e., n,
, and T.
We define the thermal energy per unit volume as
and transform the three equations to the q-space:
,
, and
, where j is the longitudinal component of momentum, flux J. We then introduce the normalized variables:
,
, and
. The normalization factors are given as follows.
![]() | (6) |
![]() | (7) |
![]() | (8) |
![]() | (9) |
The three equations (Eqs. 5.15.3) become
![]() | (10.1) |
![]() | (10.2) |
![]() | (10.3) |
becomes
![]() | (11) |
Therefore, the thermodynamic coefficient
becomes q-dependent and is related to S(q) by
![]() | (12) |
![]() | (13) |
![]() | (14) |
to a q-dependent quantity
![]() | (15) |
The most important point of Eq. 13 is the symmetry of the matrix that leaves only two parameters in the nondissipative hydrodynamic equations. To complete the generalized hydrodynamic equations, we must include a viscosity term in Eq. 5.2 to make it the Navier-Stokes equation (Landau and Lifshitz, 1969
), and include a dissipative term in Eq. 5.3 so ds/dt is positive (Landau and Lifshitz, 1959
). The dissipative coefficients are also assumed to be q-dependent:
![]() | (16) |
| METHOD OF DATA ANALYSIS |
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![]() | (17) |
)/S(q) is a function of the quantities in the matrix of Eq. 16. If one defines
, it is straightforward to show
![]() | 22 |
![]() | (18) |
The second equation of Eq. 18 is the solution of Eq. 16. This solution can be expressed in the form of hydrodynamic modes:
![]() | (19) |
) as a sum of three Lorentzians centered at
= 0, ±
s. This is essentially a Rayleigh-Brillouin triplet as seen in light scattering (Landau and Lifshitz, 1969
h to the heat diffusion damping, and the inelastic side peaks to the sound frequency
s and damping
s. The Lorentzian parameters,
h,
s, and
s, in Eq. 19 are functions of the four fitting parameters given in Eqs. 16 and 18. In fact, the number of fitting parameters can be further reduced, if the static structure factor, S(q), is measured independently and is used to predetermine fun according to Eq. 14. In that case, the three-mode hydrodynamic theory has only three free parameters. Alternatively, Eq. 14 can be used as a check of self-consistency for a four-parameter fit. The latter approach was taken in the present analysis.
A representative data spectrum S(q,
)/S(q) is shown in Fig. 1, where the measured S(q,
) was normalized by adjusting the amplitude such that the integration over
is equal to 1 (see Eq. 7). The spectrum is dominated by the elastic line at
= 0 where the spectrum is barely wider than the instrument resolution. Important signals are contained in the side wings, which are two orders-of-magnitude smaller than the central peak. A weighted least-square fit to the data was calculated according to Eq. 18, using a downhill gradient search (Press et al., 1992
) to minimize the
2 function defined as
in the four-dimensional parameter (fun, fuT, zu, and zT) space, where yi is the data point, f(xi) the calculated value for the fit, and wi the statistical weight of the point i. The number N stands for the degrees of freedom, i.e., the number of the data points minus the number of parameters. For each value of q, the calculated dynamic structure factor, Eq. 18, was multiplied by a Boltzmann term
corresponding to the temperature used in the experiment, so as to satisfy the quantum mechanical detailed balancing condition (Bée, 1988
). The model equation for the least-square fitting was obtained by the convolution of the resolution function, R(
), of Eq. 1, and the normalized theoretical structure factor
denoted as
:
![]() | (20) |
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2 fitting. In the least-square fit, the data points are usually weighted according to their statistical errors. Using Poisson statistics for the photon counts, this implies that the dominant central peak will have the largest relative weight in the fit and its importance will dominate the wings, that is, the deviations of the model from the data in the central peak region will be more important in the
2 than those in the wings. However, as the central peak of the theoretical model (Stheo in Eq. 20) is extremely narrow, the width of the measured S(q,
) in the central region (
= 0) is dominated by the instrument resolution. With the large statistical weight for this peak, the fit algorithm tends to adjust the fit parameters for inaccuracies in the resolution function while allowing a decrease in the fit quality for the less weighted side wings. These wings, on the other hand, are less sensitive to the exact shape of the resolution function R(w), since their widths are much larger, and thus the model parameters are more directly expressed there. To better determine the model parameters, we somewhat arbitrarily decreased the statistical weight given to the central peak; for example, reducing the weight of five data points 
= 0, each by a factor of 10. This did not alter the results of the fit to the spectra of the three lowest q-values (see below). | ERROR TREATMENT |
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2 function at the minimum (Press et al., 1992
h,
s, and
s. This procedure is however cumbersome and not trustworthy in a four-dimensional parameter space where there are numerous local minima. Therefore, we use a different method to estimate the error by direct numerical trials. We first produced three model data sets with assumed parameters that have the same energy resolution and step size as the spectra recorded in the experiment. The data sets are exemplary of three different experimental situations encountered as shown in Fig. 2: Model A has well-separated side peaks; in Model B the side peaks are
3 meV from the central peak; and in Model C the side peaks are within the instrumental resolution (
1.8 meV) of the central peak. Then we used the least-squares fitting algorithm described above to find the best values for the fitting parameters. The results are listed in Table 1 in the column labeled fit 1. For all three models the fitted values coincide with the true values rather well, and we took this as a proof for the correctness of the implemented algorithm. (To exclude the possibility of a circular argument, the model data sets were produced by an independent algorithm. The fitting algorithm was written in the C programming language, whereas the model data sets were produced using the Mathematica program.) The observed deviations from the exact values are the results of truncation errors in the calculation of the convolution. Next, to simulate the real experimental data, we added random noise to the model data sets comparable to the statistical errors encountered in the experiment. Two noise levels corresponding to 15,000 counts/s (fit 2) and 5000 counts/s (fit 3) at the elastic peak were added, and subsequently fitted. The results are listed in Table 1.
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3 meV away from the central line, the errors in all three Lorentzian parameters increased in comparison to Model A. At low noise level the deviation for the width and position of the side peaks is roughly 10%, but it increased to
25% for the high noise level. In the case of Model C, where the side peaks are close to
= 0, the results show that the determination of the parameters is rather unreliable. Primarily, we found that varying the initial parameter values could be very hazardous and often caused the fit to end in a completely different minimum of
2. Even at the low noise level (fit 2), the fitted
s is more than twice the true position. This is partly a problem of the instrument resolution. It can be shown by the same method that a higher instrument resolution would solve this problem. Another way to remedy the problem of Model C is to increase the measurement time to reduce the statistical errors. This is impractical, however, as the error would need to be improved by
2 orders of magnitude, which would require an enormous measurement time. | RESULTS AND DISCUSSION |
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14.5 nm-1 is the well-known paraffin peak originated from chain-chain correlations (Warren, 1933
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2 was reached. In the event that different minima were reached for the same data set, the fit with the lowest
2 was used. Subsequently the fitting parameters were used to calculate the Lorentzian parameters
h,
s, and
s. For all the samples, the spectra of the lowest four q-values were fitted well with a final
2 value being less than 2 (Fig. 4). The spectra of q > 10 nm-1 are of the type of Model C discussed in the last section, for which we could not obtain reliable fits. However, we have no doubt that since the IXS instruments continue to improve, we will be able to obtain analyzable lipid data at the high q-region in the near future.
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h,
s, and
s. It is well-known that in the hydrodynamic limit of q
0, the peak widths
h and
s are proportional to q2, whereas the sound energy,
s, is proportional to q (Landau and Lifshitz, 1959
h is inversely proportional to the static structure factor S(q) (Cohen et al., 1987
14.5 nm-1 corresponding to the size of the chain cross section 2
/14.5
0.43 nm. At this and larger values of q, all local conservation laws expressed in terms of molecular densities disappear, except for the conservation of mass. Thus, near q = qG, the heat mode is expected to coincide with the self-diffusion mode of the chains.
The extended sound (Brillouin) mode gives two parameters,
s and
s. As we see in Fig. 4, the sound peaks do not always appear as separate maxima. They might overlap with the central Rayleigh peak. For liquid argon and neon (De Schepper et al., 1983
; Van Well and de Graaf, 1985
), and high-density hard-sphere or Lennard-Jones fluids (Cohen et al., 1984
), the dispersion curves show a propagation gap for a certain range of q, where
s = 0 and the modes do not propagate. In such a region there are two purely damped modes. The location of this region is q
qG. For liquid cesium near its melting point (Bodensteiner et al., 1992
) and low-density hard-sphere fluids, the dispersion curves show a minimum, rather than a gap, also at q = qG. Physically, a gap or a dip in
s versus q can be understood as caused by the competition between the elastic (restoring) force and the dissipative process, which for small q, are proportional to q and q2, respectively. Thus in the hydrodynamic (small q-) region, the elastic force prevails and the sound propagates. For larger q, however, the dissipative force may become comparable to or dominating over the elastic force, so that sound barely propagates or no propagation is possible. For still larger q-values, the molecules behave like an ideal gas (De Gennes, 1959
), thus the propagating mode appears again, according to the study on hard-sphere fluids (Cohen et al., 1984
).
The pure DMPC sample was measured at two different temperatures, T = 290 K and T = 308 K, corresponding to the gel (Lß') phase and the fluid (L
) phase of the lipid, respectively. The data and the final fit function for S(q,
)/S(q) are shown in Fig. 4. All spectra in this q-range were fitted quite well. The q-dependence of the fitting parameter fun(q) agrees with the measured
as a check of self-consistency (Eq. 14).
In the gel phase the sound modes are most clearly distinguishable. They appear in the raw data as pronounced shoulders to the dominant central peak. Each final theoretical fit function (before the convolution with the instrument resolution) consists of a central (or Rayleigh) peak and two side peaks shifting in frequency with q that correspond to the Stokes and anti-Stokes components of the Brillouin doublet. The dispersion relation for the sound mode
s versus q is shown in Fig. 5, and the width of the Brillouin peak
s in Fig. 6. We stress that these were modes of sound propagating in the plane of individual bilayers. At the lowest measurable point in q (
4.5 nm-1), the sound frequency is
7 meV, and width
s
2.5 meV. With increasing q, the sound frequency first increases to
8.5 meV at q
7.5 nm-1, and then decreases. In the meantime, the width steadily increases with q. At q = 10 nm-1, the width becomes comparable to the frequency. The spectra beyond q = 10 nm-1 could not be analyzed reliably as explained in the last section. The same general behavior can be seen in the fluid phase of DMPC, although the Brillouin peaks are less obvious. The reason is that the sound frequencies are lower than the gel phase whereas the peak widths are larger (see Figs. 5 and 6). On the other hand, the measured width of the heat mode
h (Fig. 6) did not show any systematic behavior, indicating large uncertainties. Of the three Lorentzian parameters, this is the least accurate because the central peaks were barely larger than the instrumental resolution (Figs. 1 and 4).
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7.5 nm-1, then decreases. As mentioned above, this is the general feature of high-frequency sounds in liquids, as seen by inelastic neutron scattering of liquid argon (De Schepper et al., 1983
Two samples of DMPC with cholesterol at 40 mol % and 20 mol % were measured at T = 308 K, the same temperature at which the fluid phase DMPC was measured. As shown in Figs. 5 and 6, their dispersion curves and damping width
s fall in between the gel phase and the fluid phase of pure DMPC. The in-plane sound velocities were calculated to be
1730 m/s for DMPC with 40 mol % cholesterol and 1540 m/s for DMPC with 20 mol % cholesterol. The effect of cholesterol on the properties of phospholipid bilayers is one of the most studied membrane problems (see review in Gennis, 1989
). X-ray and neutron diffraction show that cholesterol inserts normal to the bilayer with the OH group located near the ester carbonyl of the lipid (Worcester and Franks, 1976
). Infrared spectroscopic experiments showed that above the main (gel-fluid) transition, cholesterol decreases the fraction of the gauche rotamers in the lipid chains, whereas below the transition the effect is opposite (Cortijo et al., 1982
). The result is that lipid-cholesterol mixtures behave roughly as intermediate between the gel and fluid states of pure phospholipids. Our result here shows that this is also true for the collective chain dynamics. This might be connected to the ability of cholesterol to reduce ion leakage across the membrane (Haines, 2001
) as the collective modes have previously suggested to play a role in the transport of small molecules and ions across the membrane (Paula et al., 1996
).
The work presented above demonstrates that IXS provides a unique probe for high-frequency (
1012 s-1) collective in-plane chain dynamics. It is highly desirable to measure
h,
s, and
s accurately and up to q
15 nm-1. As was found in hard-sphere fluids (Cohen et al., 1984
), the high q-region is rich in dynamics information. It would be interesting to see whether the collective dynamics of lipid bilayers are similar or significantly different from ordinary fluids. One of the outstanding membrane problems has been: which property of lipid bilayer is directly related to transbilayer molecular permeability? Since the original solubility-diffusion theory (Findelstein, 1976
) was found to deviate from experiments (Deamer and Bramhall, 1986
), it has been argued that some features of lateral chain motion are responsible for the molecular transport across the bilayer, such as transient defects, transient pores, or gauche-trans-gauche kinks (Nagle and Scott, 1978
; Deamer and Bramhall, 1986
; Paula et al., 1996
; Haines, 1994
; 2001
). Essentially the lipid chains must separate just enough at some discrete frequency to allow molecules to pass through the membrane (Haines, 1994
). But it has been difficult to relate these theoretical ideas to experiment. We suggest a combination of collective chain dynamics by IXS, MD, and permeability measurements to gain insight into the permeability problem that has recently gained importance in applications to drug delivery.
As noted in the Introduction, this frequency domain is ideal for MD simulations. Indeed we would like to stress that the measurement of IXS provides the most direct comparisons with MD, because both techniques probe the same frequency domain. Our IXS experiment performed at the APS revealed an important criterion for data analysis. At the resolution of the current instrument and at the currently achievable photons statistics, only the spectra <q
10 nm-1 were analyzable. The dispersion curves indicate a low-energy region (soft modes) >q
10 nm-1 (Chen et al., 2001
; Liao and Chen, 2001
) that could be important because they would be the prevalent modes of chain excitations. To measure this region, both the instrument resolution and photon statistics need to be improved. Obviously a similar criterion applies to the simulated S(q,
) produced by MD.
| ACKNOWLEDGEMENTS |
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Submitted on December 11, 2002; accepted for publication February 10, 2003.
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