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* Department of Geosciences, Princeton University, Princeton, New Jersey;
Laboratory of Atomic and Solid State Physics, Cornell University, Ithaca, New York; and
Cornell High-Energy Synchrotron Source, Ithaca, New York
Correspondence: Address reprint requests to S. Speziale, Dept. of Geosciences, Guyot Hall, Princeton University, Princeton, NJ 08544. Tel.: 609-258-3261; Fax: 609-258-1274; speziale{at}princeton.edu.
| ABSTRACT |
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C13 to 2.99 ± 0.05 GPa. Further constraints on the elastic tensor are obtained by combining the Brillouin quasilongitudinal results with axial compressibilities determined from high-pressure x-ray diffraction. We constrain the adiabatic bulk modulus to the range 2.75.3 GPa. | INTRODUCTION |
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The elastic properties of proteins in solution have been explored by ultrasound velocimetry (Sarvazyan, 1991
; Kharakoz, 2000). This technique yields information about the compressibility of protein molecules and their surrounding hydration layer. This in turn indirectly yields information about their hydration state and the amplitude of their structural fluctuations, although separating these contributions is difficult. Since the orientation of the protein molecules in solution is random, this technique yields only the protein's bulk modulus, which is insensitive to intrinsic molecular anisotropy and by itself provides limited information about the protein's physical state (Kharakoz, 2000).
The orientation averaging that occurs in solution studies can be eliminated by studying proteins in crystalline form. Crystal elasticity is determined by the anisotropic elasticity of the individual molecules and of the crystal contacts between molecules. Studies on a wide array of organic and inorganic materials demonstrate that the elastic tensor and associated damping constants can provide detailed information about both static structure and dynamical processes (e.g., Krüger et al., 1989
; Lee et al., 1987
; Tao et al., 1988
). The elastic tensor determines the energetics of cracks, dislocations, vacancies, and other defects responsible for crystal mosaicity. It is essential to understanding how protein crystals respond to mechanical stresses associated with postgrowth treatments such as soaking in solutions containing heavy atom compounds, ligands, drugs, and cryoprotectants, to stresses caused by radiation damage, and to stresses that occur during flash cooling procedures. The elastic tensor is also essential in understanding the structural stability of catalysts based on cross-linked enzyme crystals.
Protein crystal elasticity has been explored using mechanical resonance techniques (Morozov and Morozova, 1981
, 1993
; Morozov et al., 1988
). Young's modulus of selected protein crystals decreases with increasing hydration and with increasing temperature up to the denaturation temperature. Analysis of this data using highly simplified models yields estimates of the molecular and intermolecular elasticity, and of the amplitude of rigid body molecular translations and librations consistent with those obtained by other techniques (Morozov and Morozova, 1986
).
The mechanical properties of protein crystals have also been studied using ultrasonic techniques (Edwards et al., 1990
; Tachibana et al., 2000
), and x-ray diffraction under hydrostatic pressure (Kundrot and Richards, 1987
; Katrusiak and Dauter, 1996
; Fourme et al., 2001
). Both ultrasound and resonance measurements in crystals are very demanding in terms of sample size and preparation requirements. Extensive sample manipulations such as crosslinking, cutting, and gluing can modify crystal properties (Morozov and Morozova, 1981
; Edwards et al., 1990
). Ultrasound measurements require crystals a few millimeters thick, limiting their applicability to the handful of proteins that yield crystals of such size. The existing results from all of these techniques are fragmentary.
Brillouin spectroscopy (Brillouin, 1922
) is a noncontact method that has the potential to give a more complete picture of protein crystal elasticity. It allows direct measurement of the sound velocity along general directions in a transparent medium and hence the determination of the elastic tensor of anisotropic materials. Brillouin spectroscopy has been widely used for the study of inorganic crystals (Zha et al., 1993
), polymers (Krüger, 1989
) and biological materials (Vaughan and Randall, 1980
; Lee et al., 1993
).
Here we report results of the first extensive Brillouin scattering study of protein crystal elasticity. Some preliminary results have been published elsewhere (Caylor et al., 2001
).
| SAMPLES AND EXPERIMENTAL METHODS |
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Crystals were dehydrated to different RH by equilibration, at T = 295 ± 1 K, with vapors of saturated salt solutions of KNO3 (93% RH), KCl (86%), KBr (83%), (NH4)2SO4 (79%), NaCl (75%), and CuCl2 (67%). The values of RH are based on those reported in Rockland (1960)
. A small drop of the appropriate salt solution was placed in the capillary at a distance of
1 cm from the crystal. X-ray topography and x-ray diffraction peak shape analysis (Dobrianov et al., 2001
) show evidence of fine scale heterogeneities and dislocations in tetragonal lysozyme crystals dehydrated below 88% RH. However, we did not observe any evidence of Brillouin signal degradation even in highly dehydrated crystals.
Using Brillouin scattering, acoustic velocities can be determined in a transparent medium from the frequency shift of laser light inelastically scattered by thermal vibrations. For an optically isotropic medium, conservation of energy and momentum require that the frequency of the scattered light be shifted from that of the incident light by (Brillouin, 1922
):
![]() | (1) |
is the angle between the incident and scattered wave vectors. Three Brillouin peaks will in general be produced by the three polarizations (quasilongitudinal, and two quasitransverse) of the scattering phonon along a general direction in crystalline solids. Due to its extremely low bi-refringence (
n = 0.005; Cervelle et al., 1974
Brillouin scattering is performed using standard scattering geometries characterized by different angles between the directions of the incident and scattered light outside the sample that are shown in Fig. 1, bd. These geometries prevent overlap of sample scattering with the unshifted incident light and can enhance peak intensities by exploiting selection rules imposed by the elasto-optic coupling in the examined material (e.g., Cummins and Schoen, 1972
).
|
![]() | (2) |
is the density of the material, v is the velocity of the phonon, and
il is the Kronecker delta. Eq. 2 is a set of three homogeneous equations, which have nontrivial solutions only if
![]() | (3) |
v2 with three real positive roots.
A vertically polarized neodymium vanadate laser (
= 532.15 nm) operated at 1.59 W and filtered to 1.59 mW was used as an excitation source. X-ray topography and diffraction resolution measurements performed at the Cornell High-Energy Synchrotron Source on crystals after extended laser illumination verified that these small powers caused no heating damage. Brillouin spectra were acquired using a six-pass Sandercock tandem Fabry-Perot interferometer (Lindsay et al., 1981
) and a solid-state photon detector with 70% quantum efficiency. Experiments were performed with and without polarization control in the incident and scattered light path. A diagram of the setup of the Brillouin system used in this study is outlined in Fig. 2. Selected crystals were mounted in square cross-section capillaries or sandwiched between parallel glass slides (Fig. 1 a). The typical size of the analyzed crystals was
400 x 500 x 100 µm but Brillouin signal was obtained from crystals as small as
200 x 300 x 60 µm. The setup that we used is capable of producing intense Brillouin signal from high-quality crystals as small as 60 x 60 x 20 µm.
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| RESULTS |
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![]() | (4) |
Typical Brillouin spectra are shown in Fig. 3. Comparison of the frequency shift measured in the [110] direction in backscattering (180), forward symmetric (90A), and reflected symmetric (90R) geometries yield a refractive index of 1.51 ± 0.07 in good agreement with the value of 1.56 ± 0.01 obtained by oil immersion and with the value reported by Cervelle et al. (1974)
of 1.5381.575.
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| DISCUSSION |
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![]() | (5) |
is the density of crystalline lysozyme (taken from the isothermal dehydration data of Gevorkyan and Morozov, 1983
![]() | (6) |
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![]() | (7) |
is Poisson's ratio.
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After correction for instrumental broadening, we calculated the normalized attenuation of the quasilongitudinal phonons in the [110] and [001] directions (e.g., Lee et al., 1993
),
![]() | (8) |
is the phonon's energy decay constant,
S is the phonon wavelength,
1/2 is the half-width at half-maximum of the Brillouin peak, and 
B is the Brillouin frequency shift.
The phonon attenuation decreases with dehydration, and it does not show any discontinuity in the 9386% RH range (Fig. 8). The value of the phonon attenuation for both the [001] and [110] directions ranges between 0.3 and 0.9, and it is comparable to hypersonic attenuation of plastic crystalline and amorphous organic solids, which ranges between 0.4 and 0.7 (e.g., Folland et al., 1975
; Huang and Wang, 1975
). However, other factors including static disorder and the effect of coupling with the relaxation mode of the hydration shell (Tao et al., 1988
; Lee et al., 1993
) could contribute to the observed peak width.
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According to the fluctuation-dissipation theorem, the Brillouin spectral profile S(
) is proportional to the imaginary part of the dynamic susceptibility (Lee et al., 1993
),
![]() | (9) |
is expressed as
![]() | (10) |
p(
) = 1/(
-
2 - i
) is the uncoupled phonon susceptibility;
r(
) = 1/(1 - i
) is the susceptibility of the Debye relaxational mode of the hydration water;
is the coupling constant, proportional to the coupling strength (Lee et al., 1993
0 and
are the frequency and linewidth of the uncoupled phonon; and
is the (single) relaxation time of the water of hydration. Twenty Brillouin spectra collected along [110] and [001] at different relative humidities were fit to Eq. 9. Representative results of application of this model are shown in Fig. 8.
From Fig. 8, the hydration shell coupling is responsible for 2985% of the observed acoustic attenuation, but no systematic differences in this coupling along the [110] and [001] directions is observed. The lifetime of the relaxation mode is 55 ± 5 ps, comparable to the value observed in Na-DNA and hyaluronic acids (Tao et al., 1988
; Lee et al., 1993
). The coupling effect increases with decreasing RH, with a maximum at 79% RH, and
-ranges between 1.9 and 3.6 GHz. The coupling also slightly affects the apparent Brillouin peak position: the coupled frequency shifts are systematically 1% lower than the uncoupled shifts for both the [110] and [001] phonons at all relative humidities, which translates into a 2% stiffening of the retrieved elastic moduli. The coupling between acoustic phonons and water relaxation in tetragonal lysozyme is unaffected by the structural transition at 88% RH. This suggests that the structural transition is related to processes not involving the hydration shell, either within the protein framework and/or involving water outside the hydration shell.
X-ray diffraction data and our Brillouin data suggest a strong difference between the elastic behavior along [110] and [001] with decreasing dehydration. However, the effect of hydration water appears to be the same in the two directions. Estimates of the stress associated with dehydration from 98% to 70% RH (Morozov et al., 1988
) are on the order of 0.04 GPa. Based on available constraints on the intrinsic compressibility of lysozyme in solution (0.1 GPa-1; Gavish et al., 1983
; Paci and Marchi, 1996
) this stress would correspond to an average 0.4% linear compression of the molecule, which is negligible compared with the observed decrease of unit cell parameters upon dehydration from 98% to 79% RH (
a/a = 0.03,
c/c = 0.11; Dobrianov et al., 2001
). This suggests that the main effect of dehydration in tetragonal lysozyme is a change in protein packing density associated with loss of water and not with molecular compression. This process is anisotropic because of the relatively loose packing along [001] (e.g., Nadarajah and Pusey, 1996
).
The observed longitudinal moduli of tetragonal lysozyme can be modeled as a weighted combination of three independent components: 1), an intramolecular component (the stiffness of the protein molecule itself, which we treat as constant for the entire RH range); 2), a component related to the intermolecular water, equal to the bulk modulus of water; and 3), a separation-dependent intermolecular interaction component that accounts for all the direct and water-mediated interactions (Coulombic, van der Waals, hydrophobic, and hydrogen bonds) between pairs of protein molecules in the crystal. This approach is a variation on that applied by Lee et al. (1987)
to DNA films.
We assume that the elastic moduli can be expressed as
![]() | (11) |
is the measured modulus along [hkl],
is the intrinsic modulus of the molecule, and
is the component arising from intermolecular interactions. Cw is the elastic modulus of water (2.1 GPa). X is a volumetric weighting factor for water and protein at any degree of hydration,
![]() | (12) |
In a preliminary test of this model we have assumed that intermolecular interactions are limited to a combination of repulsive Coulombic and short-range attractive van der Waals forces. Increasing hydration weakens
through volume expansion of the crystal. The interaction component of the longitudinal elastic modulus is assumed to have the form (Lee et al., 1987
),
![]() | (13) |
is a constant, d[hkl] is the intermolecular distance determined from crystallographic data, and d0[hkl] is an effective molecular size, fixed to have d[hkl] - d0[hkl] = 3.5 Å at 67% RH. The exponent N is subject to the constraint 3.9
N
4.1. Equation 13 is consistent with the form of empirical potentials for lysozyme in moderately dilute salt solutions (NaCl 200 mM; Tardieu et al., 1999
For our analysis, packing densities, intermolecular distances and their dependence on dehydration were determined from x-ray structural models (Sauter et al., 2001
), from morphological and growth models (Nadarajah and Pusey, 1996
), and from dehydration isotherms (Gevorkyan and Morozov, 1983
). Values of d0[hkl], N,
, and
were obtained by requiring the model to agree with experimental data at 67% RH and by adjusting the parameters to obtain a good fit to the data at higher relative humidities (Fig. 5). The best fit parameters are reported in Table 2. Although the model is not unique, it provides a useful starting point for discussing the contribution of different structural components to the observed elasticity and elastic anisotropy. The best fit moduli of the molecule in the [110] and [001] directions are equal within uncertainties (
,
). At 67% RH the "stiff framework" components of the moduli (
) along [110] and [001] are 12.3 ± 0.6 and 11.9 ± 0.4 GPa, but at 98% RH they are equal to 7.9 ± 0.6 and 6.5 ± 0.4 GPa, the [110] value decreasing more strongly than the [001] value. By testing a wider range of models using a larger data set, we should be able to better constrain the relative contributions of the different components to the elastic properties of tetragonal lysozyme and other protein crystals.
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| ADDITIONAL CONSTRAINTS ON THE ELASTIC TENSOR OF LYSOZYME |
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![]() | (14) |
![]() | (15) |
is the angular direction of the phonon wave vector with respect to the [001] direction,
is the crystal density, and
![]() |
![]() |
![]() |
![]() |
![]() |
The longitudinal acoustic mode velocities measured along the (110) plane in crystals at 98%, 79%, and 67% RH were fitted to the Christoffel's equation to obtain a subset of the second-order elastic tensor. The absence of observed transverse acoustic phonon velocities restricts our ability to recover the complete elastic tensor (Castagnede et al., 1992
), and allows us only to give constraints on the combination of C44 and C13 in addition to the combination C11 + C12 + 2C66 and C33. Additional constraints on the elastic constants derive from the strain energy stability requirement that the elastic tensor is positive definite (Born's criteria), which for a tetragonal crystal translates into (e.g., Fedorov, 1958
):
![]() | (16) |
The same two-stage procedure was also applied to invert the velocity data for the lysozyme crystals at 98%, 79%, and 67% relative humidity. The inversion of the longitudinal velocities allowed us to constrain the combination C44 + 1/2C13. The high linear correlation between these two constants is clearly visible in Fig. 9, which provides an illustration of the "goodness of fit" in the case of 98% RH for a wide range of C13 and C44 values when the other constants are fixed to the best model values. The best solutions are not distinguishable at the 70% confidence level at all the RH conditions. The best-fit constants for the examined degrees of dehydration are reported in Table 3. The calculated and observed sound velocities are compared in Fig. 7.
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In the case of 98% RH, the direct measurement of the longitudinal acoustic velocity along the [100] direction allows us to fix the value of C11 to 5.49 ± 0.01 GPa. The values of the axial compressibilities determined from high-pressure diffraction (Kundrot and Richards, 1987
; Fourme et al., 2001
) can be used to provide additional constraints on the elastic constants and bulk modulus, if we neglect the difference between the isothermal and isentropic moduli. The logarithmic ratio of the axial compressibilities along the c- and a-axes (Nye, 1985
) is
![]() | (17) |
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The combined constraints from Brillouin scattering and high-pressure x-ray diffraction measurements restrict the range of values of the shear modulus to 0.171.38 G GPa (Fig. 10 b). The "isotropic" Poisson's ratio is not well-constrained, and it can range between the value of 0.48 (for C44 = 0.35 GPa) and 0.28 when C44 = 1.45 GPa. This wide range corresponds to values going from those of rigid polymers to those of soft rubbers. A value similar to our upper bound (0.47) was obtained from ultrasonic measurements for crystals of ribonuclease-A and human hemoglobin (Edwards et al., 1990
).
Upper and lower bounds to the Young's moduli along the [110] and [001] directions (see for instance, Nye, 1985
, p. 145) are 0.58 and 0.17 GPa (lower bound) and 3.20 and 2.04 GPa (upper bound), respectively (Fig. 9 b, Table 4). The values of the two moduli are constrained to 2.9 ± 0.3 GPa and 1.6 ± 0.3 GPa, respectively, when C44 is >0.8 GPa. These higher bounds of the two moduli are comparable to the Young's moduli calculated assuming elastic isotropy and a Poisson's ratio of 0.33 (Table 1), and support the existence of a frequency dependence of the elastic moduli (Fig. 7). The average logarithmic frequency derivative,
E/
log
, calculated by combining the results of this study with the range of the available data from different techniques (see Fig. 7), ranges between 0.2 and 0.4 GPa/decade over the range from 1 Hz to 109 Hz. These values are in good agreement with the available data for the frequency dependence of the bulk modulus in polymers (0.040.5 GPa/decade; Lagakos et al., 1986
), and indicate that protein crystals exhibit a viscoelastic response.
| CONCLUSIONS |
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The linewidths of the Brillouin peaks were described using a mechanical model in which the phonon mode couples to a (single) relaxational mode of the hydration water. The relaxation time (55 ps) is similar to that found for DNA films. Another simple model illustrated how information about intermolecular and intramolecular contributions to protein crystal elasticity can be extracted from the humidity dependence of sound velocities. A preliminary test of this model suggests that the anisotropy of tetragonal lysozyme is controlled by crystal packing and not by intrinsic molecular anisotropy.
The dependence of velocity on scattering direction places constraints on the elastic tensor. The inverted elastic moduli provide a more detailed picture of lysozyme elasticity as a function of hydration than has been possible using other techniques.
Our results demonstrate that Brillouin spectroscopy is a powerful probe of elastic and structural properties of protein crystals. It is a nondestructive, noncontact technique, which can be applied to protein crystals of ordinary size. The direct determination of the elastic tensor, when combined with structural data from x-ray crystallography, will allow a more detailed analysis and understanding of protein structure and dynamics.
| ACKNOWLEDGEMENTS |
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This work was supported by the National Aeronautics and Space Administration (NAG8-1357 and NAG8-1831); the National Science Foundation (EAR-9725395); and the David and Lucille Packard Foundation (to T.S.D.). The Cornell High-Energy Synchrotron Source is supported by the National Science Foundation (DMR 9713424).
Submitted on October 7, 2002; accepted for publication July 7, 2003.
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