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*Center for Hearing and Communication Research and Department of Otolaryngology, Karolinska Institutet, Stockholm, Sweden and **Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden
Correspondence: Address reprint requests to Anders Fridberger, Gustav V. Research Institute, Karolinska Sjukhuset M1, SE-171 76 Stockholm, Sweden. Tel.: 46-85-177-3215; Fax: 46-834-8546; E-mail: anders.fridberger{at}cfh.ki.se.
| ABSTRACT |
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| INTRODUCTION |
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| METHODS |
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Implementation
In principle, pulsed illumination may be accomplished either through the use of external modulation of a continuous wave laser or through the use of a laser with pulsed output. The laser wavelength should match the absorption spectra of commonly used fluorophores. This precluded the use of diode lasers since these lasers emit light at wavelengths where many physiologically interesting dyes are not effectively excited. Second, it was desirable to be able to vary both the pulse width and repetition rate. This excluded pulsed Nd:YAG and dye lasers since they typically have fixed pulse widths and repetition rates.
The technique that seemed capable of fulfilling all of the above demands was to use external modulation of the 15 mW Kr/Ar laser originally delivered with the confocal microscope. This was accomplished by an acousto-optic modulator (model M080-1B-GH2, Gooch and Housego Ltd., Ilminster, UK, 80-MHz driving frequency), that functioned as a very fast shutter that received the light from the Kr/Ar laser and, depending on the status of a transistor-transistor-logic (TTL) control signal, the beam was either stopped or sent to a single mode polarization-preserving optical fiber. The collimated output of the optical fiber was coupled into the scan head of the confocal microscope, allowing its illumination to be managed by the TTL signal that controlled the acousto-optic modulator (AOM).
Since this imaging mode meant that each pixel would receive an unknown number of pulses, a system for counting the number of pulses in each pixel of the final image was developed. Using a Keithley Metrabyte DAS 1802ST analog-to-digital (A/D) board in a standard Pentium II computer, the TTL pulses controlling the AOM were sampled into a two-dimensional array with dimensions equal to that of the confocal image. Sampling was controlled by custom software running under the freeware 32-bit data acquisition program Viewdac (version 2.2, Keithley Metrabyte Inc., Cleveland, OH; these programs could be implemented on any data acquisition system capable of 330 kHz sampling and calculations involving large multidimensional arrays).
TTL pulses from the system controller of the confocal microscope triggered the A/D board, to ensure synchronization with the pixels of the image. No logic output corresponding to each pixel in the image was available. Instead, we used the "scan active" signal from the system controller. This TTL signal went to logic zero 12 µs before acquisition of the first pixel in each line of the image; it was used to trigger a Hewlett-Packard 33120A function generator outputting a burst of TTL pulses. TTL pulses within the burst were synchronized with the pixels in each line of the confocal image, and used as an external clock for the A/D board. Since the A/D board had a maximum sample frequency of 333 kHz, the number of pixels per line was limited to 400. Synchronization between the A/D board and the confocal image was confirmed by imaging test samples as described below. The array containing the pulse counts was saved to disk and subsequently used in further processing by dividing each image with the corresponding array. This enabled comparison of fluorescence levels between different images and different regions of the same image. A schematic diagram of the system is given in Fig. 1.
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Computational methods
Image sequences from the inner ear generated by the system described above showed subtle structural alterations that were difficult to quantify using simple methods. To assess these motion patterns in a quantitative and reliable way, we used an optical flow computation technique as described below. Another issue was to reduce the level of random noise present in the images. This level was usually significant, the amount of light received by each pixel being limited both in space (through the confocal aperture of the microscope) and time (due to the pulsed-illumination). We dealt with this problem by applying the wavelet denoising technique to the image sequences (Boutet de Monvel et al., 2001
). The optical flow computation and all further processing were then performed on the denoised images.
Optical flow computation
The basis of all differential techniques for optical flow computation is the use of a brightness constancy constraint equation (Horn and Schunck, 1981
), relating the image motion v (x, t) = (v1(x, t), v2(x, t)) at each position x = (x1, x2) and time t, to the spatial and temporal gradients of the image sequence It(x),
![]() | (1) |
t =
/
t,
i =
/
xi, i = 1,2. This equation expresses the assumption that the intensity of a given structure remains constant along its trajectory. In practice, noise will always influence the measured pixel values. Consequently, this assumption can only be approximately true for any physically realizable system. Nonetheless, the approximation was found to be good enough to allow reliable motion estimation even under conditions with noise more severe than that typically found in our image sequences (see results). The assumption holds for all positions and times of the sequence, but it determines only the component of v(x,t) along the spatial gradient
It. No information on the component perpendicular to
It can be deduced from Eq. 1 alone. This is the so-called aperture problem. To overcome this problem, we follow the approach of Bernard (2001)
Different filtered versions of the image sequence will have nearly the same motion, but different gradients, allowing one to a large extent to avoid the aperture problem (see below). The transform we use here is a nondecimated real DWT. We provide only a short account of this DWT, referring to Boutet de Monvel et al. (2001)
for more details.
For each scale j of the transform, the frame It at time t is convolved with four filters (for a two-dimensional sequence), i.e., a low-pass scaling filter
j, and three high-pass wavelet filters
j,1,
j,2,
j,3, as
![]() | (2) |
j and
j,a have a pixel size proportional to 2j, and they are constructed so that Eq. 2 can be inverted (cf. Eq. 9 in Boutet de Monvel et al., 2001
In a second step, we apply a discretized version of Eq. 1 to each of the components Ij,t and wj,a,t. To this end we approximate the temporal and spatial derivatives of the image sequence by simple and central differences, respectively:
t It
t It and
It
(
1 It,
2 It) where
t It = It+1 - It,
1 It (x1, x2) = (It(x1 + 1,x2) - It(x1 - 1, x2))/2, and
2 It (x1, x2) = (It(x1, x2 + 1) - It(x1, x2 - 1))/2. We therefore obtain a system of linear equations of the form
![]() | (3) |
![]() | (4) |
,ß take the values 1 and 2. The estimated optical flow for the given sequence is then obtained by inversion of the matrix equation Mv = X. In practice, the condition number of the matrix M varies significantly even in regions where one would not expect the aperture problem to occur, causing local irregularities in the estimated image motion. To reduce such irregularities, we applied a Gaussian smoothing to the vector field v(x,t) as a final filtering step. We used Gaussians with spatial standard deviations between 8 and 16 pixels. As a method of assessing the performance of the method, artificial displacements were introduced in real confocal images, as described below. By computing the smallest eigenvalue of the 2 x 2 matrix M, a useful measure of the reliability of the motion estimate for each pixel was obtained. By disregarding pixels with small eigenvalues, flow fields that closely matched high-contrast structures, such as cell membranes, were generated. Regions of the images that lacked defined structures, such as the fluid spaces of the scala media, were not assigned vectors. An example of this effect is seen in Fig. 6 b (see Results).
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denotes the Euclidean norm of a two-dimensional vector v.
The angular error (Barron et al., 1994
) is defined to be the angle made by the three-dimensional unit vectors
= (c,1)/(1+
and ê = (e,1)/(
It is given by the formula
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Finally, the error normal to gradient is defined as the absolute value of the component of c-e normal to the image gradient, relative to the full displacement magnitude, or in equation
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is the unit vector (defined up to sign) perpendicular to g. We used the full displacement magnitude
to normalize this error, rather than the normal component
, since the latter component is close to 0 in places where c and g are nearly perpendicular, leading to a singular normalization.
For comparison, we also implemented another optical flow algorithm (Lucas and Kanade, 1981
). This differential algorithm was previously determined to be one of the best performing methods for calculating optical flow (Barron et al., 1994
). In line with Barron et al., our implementation of the Lucas-Kanade algorithm used a Gaussian kernel with 1.5 pixels standard deviation for smoothing the input image sequence. Derivatives of the filtered sequences were estimated with simple differences for temporal derivatives, and with four-point central differences for spatial derivatives (using kernel coefficients (-1, 8, 0, -8, 1)/12 as in Barron et al., 1994
). The window function defining the neighborhood used in the estimation was also a Gaussian kernel with standard deviation of 1.5 pixels. Iteration could have improved the results of both the Lucas-Kanade algorithm and our own wavelet-based method, but it would have been computationally more costly, and was therefore avoided.
| RESULTS |
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Fig. 2 A shows the sample of cellulose fibers imaged with a free-running TTL pulse at 140 Hz controlling the AOM. The pulse length was set to 143 µs. In this case, it was apparent that pulsed illumination resulted in image distortion due to the fact that different pixels of the confocal image were exposed to a variable number of pulses. To compensate for this, the image was divided with the array generated by the pulse counting program. The result (Fig. 2 B) was an elimination of distortion.
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Application of the system to rapidly moving biological specimens
Fig. 3, B and C, shows two confocal images from the apical, low frequency region of the cochlea. Anatomical structures are depicted schematically in Fig. 3 A. The image in Fig. 3 B was acquired with regular, continuous illumination during sound stimulation. The motion of the organ caused image distortion, evident as blurring and horizontal streaks that made it impossible to discern structural details. When using pulsed illumination (Fig. 3 C), resolution was drastically improved, and it was now possible to see clearly several previously unresolved structures. Note the clarity of the cell membranes of outer hair cells and the lipid droplets inside Hensen cells. In many images, tiny details such as hair cell stereocilia were imaged at high resolution. In this image, 114-µs light pulses were used at a repetition frequency of 160 Hz. Pulses were phase-locked to the sinusoidal voltage command driving the loudspeaker that delivered the sound stimulation. Thus, this method of confocal imaging enabled us to study the two-dimensional vibration of structures inside the organ of Corti (see below).
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In a sense, these motion patterns are ideal and unrealistic. Although real images were used, the motion imposed on the images lack noise. In real experimental data, shot noise, as well as noise internal to detectors and electronics, will alter pixel values even if the structures under study show perfect conservation of intensity. Using the Monte Carlo rejection method (Press et al., 1994
), Poisson-distributed noise was added to each frame of the image sequence before performing the motion estimation, to achieve a more rigorous and realistic test. The magnitude of the added noise was related to the intensity in each pixel; it resulted in obvious image degradation, as shown in Fig. 4 E. To maximize the effect, noise was added after wavelet denoising of the image, making this an even more stringent test.
Again, contours corresponding to different error levels were superimposed. Note that error levels for the degraded image still remain <0.1 in several areas of the image; parts of the image showing distinct structural features consistently showed the lowest error. Fig. 4 F shows the average magnitude error for the boxed area in the image. Note that magnitude errors <0.1 were achieved for all displacements in the range between 1 and 4 pixels. The Lucas-Kanade method appeared to be more sensitive to noise. For all of the three error measures given in Fig. 4, FH, error levels typically showed more variation and errors were frequently more severe than the wavelet-based motion estimation.
Another important characteristic is the density of correct motion estimates. To obtain a measure of this, we computed the fraction of pixels with a magnitude error <0.1. Under noise-free conditions, both algorithms performed very well for small displacements, but the wavelet-based algorithm appeared more stable, showing less variation in the fraction of correct estimates (Fig. 5 A). When using noisy data (Fig. 5 B), the wavelet-based algorithm outperformed Lucas-Kanade for 86% of the displacement magnitudes.
Inner ear motion patterns
By acquiring images with different temporal relation between the sound stimulus and the laser pulses, the motion of inner ear structures during sound stimulation were studied. Fig. 6 A shows an image where laser pulses were locked approximately to peak rarefaction at the eardrum. Many important structures can be seen. Notable are the inner hair cells with their associated nerve endings, cell membranes of outer hair cells, and pillar cells, as well as the reticular lamina and basilar membrane. Another image was acquired after moving laser pulses 180° with respect to the stimulus. Fig. 6 B shows these two images subtracted from each other, so moving regions are either black or white whereas stationary regions appear in a neutral gray color. The optical flow pattern has been superimposed, the length of each arrow corresponding to displacement. The frames were also assembled into a movie, available for downloading (0920a14a15.avi) at http://ki.se/cfh/research/movie_en.html. For pixels showing large enough motion, basic features of the optical flow map in Fig. 6 B can be verified simply by comparing it to the motion seen in the video file.
A consistent feature in our experiments was that displacements were small in the region of the inner hair cells, but gradually increased along the reticular lamina. Motion vectors for the reticular lamina were oriented nearly perpendicular to its long axis, meaning that radial motion components were close to absent. A similar pattern was seen for the segment of the basilar membrane that we could visualize. Displacements of both the basilar membrane and the reticular lamina increased linearly along their length (data not shown). However, vector directions for these structures were not compatible with rigid rotation around a single point.
Close to the reticular lamina, outer hair cell vectors had the same orientation as vectors of the reticular lamina, but vectors from parts of the outer hair cells closer to the basilar membrane had a different orientation. This implies that outer hair cells deformed. Outer pillar cells behaved differently. Vectors for these cells were oriented along the long axis of the cell, with similar direction regardless of position along the cell, suggesting that their motion was rigid. This is in agreement with studies showing that outer pillar cells are quite stiff (Tolomeo and Holley, 1997
). These data imply that structural relations within the organ of Corti were dynamically changing during sound stimulation, a fact that directly contradicts classical models of organ of Corti vibration.
We also exposed the isolated temporal bone preparation to acoustic overstimulation at 138146 dB SPL and 160 Hz. These levels are high, but the effective level is reduced by immersion of the preparation and opening of the apical turn (see Methods). As previously described (Fridberger et al., 1998
), such stimulation causes a slow contraction of supporting cells. This slow contraction is intimately linked to the temporary loss of sensitivity that occurs immediately after loud sound exposure, and when the contraction subsides, cochlear sensitivity is frequently restored (Flock et al., 1999
; Wang et al., 2002
). Permanent hearing loss induced by loud sound may involve other mechanisms. Previous studies could only assess this structural change through images acquired before and after overstimulation. Methods described here permitted us to follow the development of this structural change by acquiring constant-phase images at regular intervals during continuous overstimulation lasting for 15 to 20 min. Small structural changes could be accurately quantified using the optical flow algorithm. Fig. 7 A is the result of subtracting the first and last image in a series of eight, acquired during the course of an overstimulation run that lasted 17 min. Again, overlapping structures are displayed in a neutral gray color and moving structures are either white or black. Computed trajectories for three different points on the supporting cells (Deiter 13) and the outer hair cells (OHC 12) are shown, together with trajectories from the basilar membrane (BM) and the inner hair cell apex (IHC). For the two latter locations, no significant motion was seen, whereas supporting cells showed motion directed at the outer hair cells. In Fig. 7 B, the Euclidean distance between the point labeled "Deiter 2" and the BM point is given as a function of duration of the overstimulation. Evidently, the contraction developed gradually during the course of the traumatic stimulus, at an approximate rate of 0.29 µm/min. Similar responses were elicited from four out of six preparations; however, contraction speed was highly variable. Outer hair cells also showed a slow structural change, most evident for the point OHC2. However, this change was hard to interpret since the optical section was slightly oblique.
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| DISCUSSION |
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Laser scanning confocal microscopy was developed to circumvent the problem of image distortion caused by out-of-focus light. Typical confocal microscopes are inherently slow due to the requirement for scanning the focused laser beam across the preparation. Using the method described here, we collected confocal images of a rapidly moving thick structure, the organ of Corti. The system performed reliably, with only minor adjustments, during several months of experiments. This required relatively small modifications that did not involve any of the more sensitive parts (such as the scanning mechanism itself). The original microscope control software was used and, by turning the AOM constantly on, the system again functioned as a standard confocal microscope.
Our method resulted in images where each pixel was acquired during a time window equal to the width of the laser pulse. Inevitably, this meant that the total acquisition time increased. For the system to work properly, the response of the system under study obviously has to be stably repeatable at least during the time it takes to acquire one image. If this were not the case, severe image distortion would result. Such image degradation was never seen in images of the organ of Corti.
An alternative way of achieving high-speed confocal imaging would be to increase the scanning speed (for review, see Tsien and Bacskai, 1995
). Apart from the technical difficulties, this approach would probably require enhanced detectors and the use of relatively high laser powers (due to the short pixel dwell times). In contrast, the system described here scans at the normal speed of the microscope, with pixel dwell times on the order of 4 µssufficiently long for effective imaging even of faint specimens.
Computing the optical flow
Several authors have made use of the discrete wavelet transform for computation of optical flow (e.g., Magarey and Kingsbury, 1998
; Bernard, 2001
). The general idea is to produce several filtered versions of the original sequence with modified gradients but nearly the same image motion. The constraint in Eq. 1 then leads to an overdetermined system for the image motion, which is solved by least-square inversion. It is necessary to use filter banks that preserve most of the information in the original sequence. However, for computational efficiency, redundancy must be minimized. It has proven very effective to use a multiscale approach where filters of various sizes are applied, such as Gabor filters agenced in a multiscale pyramid (Weber and Malik, 1995
). The DWT appears as a very natural tool in this context, as it produces a multiscale representation of an image that is complete (no information lost), essentially nonredundant, and implemented with fast algorithms. Our method is inspired by the one developed by Bernard (2001)
, although there are substantial differences, the main one being that we apply a nondecimated real DWT to the images, whereas both Bernard (2001)
and Magarey and Kingsbury (1998)
used a decimated complex DWT.
Another important difference lies in the combination of different scales of our DWT to produce an image flow estimate. The least-squares matrix M defined in Eq. 4 combines all the scales at the same time. A more standard approach would consist of building a least-squares matrix Mj for each scale j, and performing the estimation step by step in a coarse-to-fine process (Bernard, 2001
). The point is that for a real, nondecimated DWT, the matrices Mj are typically singular, leading to a poor estimation. However, the full matrix M, taking all scales into account, behaves much better. This means that the support of the wavelets used should not be too large, which puts a limit to the resolution of the computation. In practice, however, the method is robust and performs very well quantitatively, as detailed under Results.
Recently, Cai et al. (2003)
described a novel method for optical flow computation. Their method also performed better than the Lucas-Kanade algorithm, at least when using noise-free artificial displacements. Since noise has an important effect on the accuracy of the optical flow estimation, it is difficult to compare the performance of their algorithm against our own.
Motion pattern of the hearing organ
The two-dimensional motion pattern of the hearing organ is a crucial component in auditory transduction, since relative motion between different structures leads to gating of mechanically sensitive channels and ultimately to perception. Frequently, the organ of Corti has been assumed to vibrate as a single rigid body around a pivot point located close to the attachment of the basilar membrane to the bony core of the cochlea (ter Kuile, 1900
; Rhode and Geisler, 1967
; see also Fig. 8). This kinematic model, which is supported by indirect data (Hu et al., 1999
; Hemmert et al., 2000
), leads to certain predictions. Since the putative pivot point is located under the inner hair cells, the inner hair cell apex should move radially, an ideal condition for deflecting stereocilia. Since rigid vibration is assumed, only a single degree of freedom exists, and structural relations within the organ of Corti should remain static during motion. Although this model has attractive features, it is difficult to explain how outer hair cell motility can have such a profound influence on hearing sensitivity, since the rigidity of the motion entails absence of structural alterations. Therefore, some recent models include deformation of the organ of Corti as an important part of the transduction mechanism (e.g., Markin and Hudspeth, 1995
; Neely and Stover, 1993
). These models have also received indirect support (Mammano and Ashmore, 1993
; Nilsen and Russell, 1999
; Nuttall et al., 1999
).
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In the current study, parts of the outer hair cells moved in a direction different from that of the reticular lamina. Such motion was also seen in recent experiments that used slow pressure changes to produce organ of Corti motion (Fridberger et al., 2002
). These features are obviously incompatible with rigid vibration, demonstrating that structural relations within the organ of Corti are highly dynamic, at least during sound stimulation at the levels used here. Additional work is required to clarify the vibration pattern for lower stimulus intensities. However, we note that the passive mechanics of the organ are important for sound-evoked responses at all stimulus intensities and that no previous data exists on the internal sound-evoked vibration of the organ of Corti.
Images acquired during overstimulation allowed us to investigate the development of slow supporting cell contractions. These new data show that the contraction develops gradually during the course of the stimulation. This morphological change represents one of the earliest detectable alterations in organ structure during overstimulation. Recent studies have implied it as an important correlate of temporary threshold shifts, occurring before the development of other structural changes, such as outer hair cell swelling and stereocilia damage (Flock et al., 1999
; Wang et al., 2002
).
In summary, the system described in this article provides a means to capture very fast repeating events by relatively minor modifications to a standard confocal microscope. Such repeating events occur not only in the organ of Corti, but are also common during electrophysiological experiments, where isolated cells are typically subjected to repeated current or voltage steps. If small cells are studied, frame sizes can be kept small, and consequently, acquisition times can be relatively brief. For the case where a confocal microscope is already available, the method is also economical since the only new components needed are the acousto-optic modulator, laser fiber, and a computer with an A/D board and software (the necessary custom software is available on request from the first author). These are all standard components that can be purchased at relatively low cost.
Techniques for reliable motion detection are useful not only in auditory biophysics. A few other examples include monitoring the growth of cells, plants, growth cones, and the measurement of animal motion during behavioral studies. Thus, in several areas of physiology and neuroscience, methods described in this article should prove to be highly useful.
| ACKNOWLEDGEMENTS |
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This work was supported by the Swedish Research Council, Stiftelsen Tysta Skolan, Hörselskadades Riksförbund, Svenska Sällskapet för Medicinsk forskning, Tore Nilsons stiftelse, Astrid och Gustav Kaleens fond, Åke Wibergs stiftelse, Bergvalls stiftelse, and the funds of the Karolinska Institute.
| FOOTNOTES |
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Submitted on April 14, 2003; accepted for publication October 10, 2003.
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M. P. Scherer and A. W. Gummer Vibration pattern of the organ of Corti up to 50 kHz: Evidence for resonant electromechanical force PNAS, December 21, 2004; 101(51): 17652 - 17657. [Abstract] [Full Text] [PDF] |
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