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* Biology Department, Oberlin College, Oberlin, Ohio;
Pennsylvania Muscle Institute and Department of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, Pennsylvania; and
Oklahoma Medical Research Foundation, Program in Molecular Biology, Oklahoma City, Oklahoma
Correspondence: Address reprint requests to Taylor Allen, Biology Department, Oberlin College, 119 Woodland St., Oberlin, OH 44074-1097. Tel.: 440-775-8324; Fax: 440-775-8960; E-mail: taylor.allen{at}oberlin.edu.
| ABSTRACT |
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| INTRODUCTION |
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Recent structural analysis of crystalline human cardiac troponin (Takeda et al., 2003
) complements extensive biochemical work (comprehensively reviewed by Perry, 1999
), and both provide the framework of current understanding of the protein switch. The core of crystalline troponin, bound with calcium, appears to comprise an arm flexibly linked to a regulatory head. The so-called IT-arm is formed from the first two of four
-helices of TnI, the C-terminal half of troponin C (TnC), and a portion of the C-terminal half of troponin T (TnT). The head is built from the third
-helix of TnI and the N-terminal half of TnC. Toggling of the troponin switch from on, as represented by the crystalline structure, to off is envisaged to involve dissociation of TnI's third helix from the N-lobe of TnC and the subsequent association of the C-terminal half of TnI with actin-tropomyosin (Takeda et al., 2003
).
Experiments with model genetic organisms expressing troponin mutations allow testing of the proposed function of troponin within intact muscle in vivo, and the extraordinary conservation of muscle composition, organization, and function suggests that such studies can yield information broadly applicable. The nematode C. elegans moves through the use of four strips, or quadrants, of obliquely striated muscle (termed body-wall muscle) running the length of the worm and operating in conjunction with a hydrostatic skeleton (C. elegans muscle development, organization, and function are comprehensively reviewed by Moerman and Fire, 1997
). Body-wall muscle contracts at 0.12 Hz during the worm's locomotion, and tension development is regulated by troponin, although some evidence (Harris et al., 1977
) exists for myosin-linked regulation or modulation, as well. Among existing C. elegans mutants, the unc-27 class drew our attention, because its phenotype (rigidity, sluggishness, and sarcomeric disorganization; Brenner, 1974
; Zengel and Epstein, 1980
) suggested defects in the troponin switch. Moreover, the position of unc-27 on the mutation-based genetic map correlates well with the position of DNA potentially encoding TnI on the clone-based physical map. Allowing a rare opportunity to examine the role of particular TnI domains in vivo, the experiments reported here identify unc-27 as a TnI gene and examine the functional and structural impairment caused to body-wall muscle by the three available mutant alleles.
| METHODS |
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Transformation rescue
Cosmid ZK721, which spans a TnI gene predicted to lie in the vicinity of unc-27 on the genetic map, was injected into a strain carrying the temperature-sensitive genetic marker pha-1(e2123). The injected DNA included a cloned copy of the wild-type pha-1 gene to allow selection of transformants. For both of the stably transformed lines recovered, PCR with primers matching sequences unique to ZK721 was used to confirm the presence of ZK721 in the transformed lines. Standard genetic crossing enabled introduction of the transformed copy of the TnI gene into a strain carrying unc-27(e155). The chromosomal genotype of the resulting strains was pha-1(e2123)III; unc-27(e155)X. In addition, the resulting strains carried one of the two extrachromosomal elements containing transformed copies of the pha-1 gene and of ZK721. As assayed by motility and muscle organization, the transformed copies of ZK721 rescued the unc-27 mutant phenotype. Further, as expected, the unc-27 mutant phenotype reappeared when the extrachromosomal element was allowed to segregate away.
Analysis of TnI sequences
Four genomic regions potentially encoding TnI were identified by a search with BLAST (Altschul et al., 1990
), using default settings, of GenBank (url: www.ncbi.nlm.nih.gov) for sequences similar to rabbit fast twitch TnI. The activity of the four loci as bona fide genes was confirmed by amplification of wild-type cDNA for each, and the exon-intron boundaries of the genes followed from comparison of the genomic sequences deposited in Genbank with cDNA sequences. The cDNA was prepared from total RNA isolated from
0.1 g N2 worms with Trizol per its accompanying protocol (Invitrogen, Carlsbad, CA), and sequencing was done with the Silver Sequencing Kit (Promega, Madison, WI). Sites of mutation were identified through sequencing of genomic DNA isolated from single mutant worms (Williams et al., 1992
) and amplified under conditions promoting high fidelity (either with
25 µM of each nucleotide or with the proofreading polymerase pfu (Stratagene, La Jolla, CA)) using primers specific to locus ZK721.2. Mutations were verified by sequencing multiple independent genomic DNA clones, as well as ZK721.2 cDNA that had been prepared from mutant strains.
Accession numbers of TnI sequences used to determine the evolutionary relationships among TnI isoforms follow: C. elegans F42E11.4 (Z66562), C. elegans unc-27/ZK721.2 (U40951), C. elegans T20B3.2 (Z81593), C. elegans W03F8.1 (AF039041), Chlamys nipponensis (Japanese scallop) (JE0233), Drosophila melanogaster heldup (P36188), Astacus astacus (broad-fingered crayfish) (A31484), Homo sapiens cardiac (P19429), H. sapiens slow (P19237), H. sapiens fast (AJ245761), Oryctolagus cuniculus (rabbit) cardiac (P02646), O. cuniculus slow (P02645), O. cuniculus fast (P02643), Coturnix coturnix (quail) cardiac (A41030), C. coturnix slow (U37118), C. coturnix fast (A23569), and Salmo salar (salmon) fast (U83878). Sequences were aligned using ClustalX at default settings (Thompson et al., 1997
), followed by minor adjustment by eye to ensure proper alignment of characteristic TnI protein motifs. Phylogenetic analysis to identify evolutionary relationships was performed in PAUP v4.0b8 (Swofford, 2000
) using the branch and bound search analysis followed by a full heuristic bootstrap analysis using 1000 replicates. The Gibbs and Motif algorithms (url: www.blocks.fhcrc.edu) were used to define conserved blocks within aligned sequences (Henikoff et al., 1995
).
Localization of mRNA
TnI RNA was localized in larvae and adults with digoxigenin-labeled single-stranded DNA probes complementary to 3'UTR by the procedure of Kolmerer et al. (2000)
. The signal generated in this procedure is a stable, dark precipitate at sites with probes, and the anatomical location of this signal is readily identified via differential interference microscopy. Probes were reacted with embryos in the manner of Greenstein et al. (1994)
and detected by the procedure of Kolmerer et al. (2000)
.
RNA interference
T7 RNA polymerase promoter sites were incorporated at the 5' end of primers specific to the TnI isoforms, and PCR was used to generate sufficient double-stranded DNA template, purified on agarose gels, for transcription with the AmpliScribe T7 Kit (Epicentre, Madison, WI). The transcription product was denatured and reannealed to ensure a high percentage of double-stranded RNA by heating for 10 min at 75°C and cooling to 37°C over 30 min. Elimination of F42E11.4 transcripts from embryos, by RNA interference (RNAi) with fourth-stage larvae (L4) and recovery of progeny, caused significant embryonic lethality (of 266 progeny produced within 24 h by 6 treated wild-type hermaphrodites, 160 arrested as early embryos). Thus, RNAi was performed by soaking first-stage larvae (L1) for 24 h in solution containing 12 µg/µl RNA in the manner of Maeda et al. (2001)
, and worms were examined
72 h later, by which time they had attained adulthood.
Electron microscopy
Adult worms were fixed in 3% glutaraldehyde in 0.1 M Na cacodylate buffer, pH 7.27.4, on ice for 3 h, cut transversely in half in glutaraldehyde, and left in the fixative at room temperature overnight. Next day, the worms were washed in buffer, postfixed in 2% OsO4 in cacodylate buffer for 1 h, washed in water and en-block stained in saturated aqueous uranyl acetate for 1 h, all at room temperature. All material was dehydrated in graded concentrations of ethyl alcohol (EtOH; 15 min each in 70% and 90%) followed by three changes each of absolute EtOH and acetone; material was then embedded in Epon. Ultrathin sections were stained with 3% uranyl acetate in 50% EtOH and with lead salts (Sato, 1968
), and they were photographed in a Philips 410 EM.
Immunofluorescence and polarized light microscopy
Worms were labeled with mouse antivinculin (MH24, a kind gift of M. Coutu Hresko, Washington University, St. Louis, MO) at a dilution of 1:200 by the procedure described by Finney and Ruvkin (1990)
, as modified by Miller and Shakes (1995)
. The fixative contained 2% formaldehyde and 25% v/v methanol. The secondary antibody was goat antimouse conjugated with fluorescein (AP181F, Chemicon International, Temecula, CA). Polarized light microscopy with live worms was achieved by inserting between the ocular and plan apochromat objective a sheet polarizer crossed in orientation with a polarizer between the condenser and light source of an Eclipse TE300 (Nikon,Tokyo, Japan).
Tests of locomotion and measurements of sizes
For dimensional analysis, worms were synchronized in growth and photographed at defined ages via a camera attached to a stereomicroscope (MZFlIII, Leica, Bannockburn, IL). Negatives were digitized, magnified, and printed, allowing measurement of the length and diameter. For swimming assays, worms were transferred from agar plates to liquid (unless specified otherwise in text, solution was 0.1 M NaCl, 50 mM potassium-phosphate, pH 6) and were given 30 s to recover from the transfer before commencement of the measurement, which involved counting the contractile waves propagating along the length of worms during 60 s. The creeping behavior of worms was assessed in the manner of Epstein et al. (1976)
, who used a chemotaxis assay to resolve differences in crawling capability among strains. C. elegans move toward and feed on bacteria. In the assay, a drop of 10100 age-synchronized adults in a minimal volume of liquid (<2 µl) was placed at the center of a ring of bacteria, and the chemotaxis of worms from the center toward the ring was monitored. Statistical significance was evaluated with Student's t-test and the Wilcoxon-Mann-Whitney test for comparison of two populations; for multiple comparisons, ANOVA was used and followed when appropriate with a post hoc test (Tukey's honestly significant difference test and Games-Howell test, both within SPSS version 11.5).
| RESULTS |
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0.3 for F42E11.4; it was
0.1 for T20B3.2 with su142sd and e155 worms, but
0.5 with su195sd worms. Expression of body-wall isoforms of TnT (Fig. 4, K and L) and TnC (Fig. 4 M) in the mutants resembled the wild-type patterns (Allen et al., 1997
Extent of paralysis of unc-27 mutants
The locomotion of mutants was clearly compromised, indicative of deficits in the activation and relaxation of muscle. In the swimming assay, a comparatively low-force/high-velocity test, impairment was apparent as early as the first larval stage and grew worse as the worms developed (Table 1). Additionally, the severity of the mutations ("allelic strength") differed: adults homozygous for e155 operated their body-wall muscle in this assay at one-third of the wild-type frequency, whereas mutants homozygous for su142sd or for su195sd operated at about one-ninth. The somewhat compromised swimming behavior of su142sd and su195sd heterozygotes, with one wild-type and one mutant copy of unc-27, confirms the designation of these mutations as semidominant. Moreover, given the absence of haploinsufficiency (i.e., given that heterozygotes with one wild-type allele and one null allele, e155, are indistinguishable from wild-type homozygotes), the semidominance of these mutations offers strong evidence that they are manifested at the protein level. Performance of the mutants in the chemotaxis assay, a comparatively low-velocity/high-force test, also differed from that of wild-types. Fig. 5 displays the results, showing a rapid migration of wild-types to food (t1/2 = 3.29 ± 0.48 min, n =7 trials) and slower movement of mutants (t1/2 = 24.35 ± 4.56 min for e155, 25.07 ± 5.62 min for su195sd, and 59.72 ± 5.17 min for su142sd; n = 4 trials with each).
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Following interference of F42E11.4, a high percentage of su142sd and e155 animals became completely immobile (e.g., 100% immobility in two of four trials; these worms still could move their heads to forage, presumably because of expression of T20B3.2 in the anteriormost body-wall muscle cells). Wild types and, to a lesser extent, su195sd worms subjected to RNAi of F42E11.4 remained mobile. Wave frequency was 1.48 ± 0.27 Hz (n = 12) for wild-type (compare with 1.56 ± 0.19 Hz, n = 12, for "negative control" wild-types soaked in buffer lacking dsRNA; P > 0.40 by nondirectional t-test) and 0.28 ± 0.14 Hz (n = 10) for the mutant. The degree of rigid paralysis within the mutants was consequently gauged from dimensions of the worms, because hypercontracted worms have previously been shown to take on a "dumpy" appearance, due to diminution of both the body length and the length/width ratio (Reiner et al., 1995
). Results following interference of F42E11.4 are given in Table 2, with column two (labeled immobile subset) giving mean length of worms from the two trials in which complete immobility was displayed by su142sd and e155 worms, and with column three summarizing results pooled from all four trials. In both the subset and the pooled data, treated su142sd worms were shorter than the e155 ones (for the subset data P = 0.011 with Tukey's honestly significant difference test and 0.004 with the Games-Howell test; for the pooled data, P << 0.001 with both tests). Although exhibiting some ability to move, the su195sd worms also were short, with a length indistinguishable from that of su142sd worms (P > 0.15 in both cases).
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Structure of unc-27 mutant muscle
Structural analyses were undertaken to gain insight on the mechanism by which the mutations compromise muscular activity. Both polarized light microscopy with living worms and antivinculin labeling of fixed worms revealed a distortion of sarcomeric organization in the body-wall muscle of the mutants (Fig. 6). The wild-type pattern of obliquely arranged, alternating isotropic and anisotropic bands that is seen in wild-type worms (Fig. 6 B) was absent in mutants (exemplified with su142sd, shown in Fig. 6 D). Dense bodies, marking the ends of the sarcomeres and equivalent to Z-lines, were evenly spaced along parallel rows in wild-type worms, as indicated by the position of vinculin foci (Fig. 6 A), but their disposition was greatly distorted in the mutants (Fig. 6 C).
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| DISCUSSION |
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Paralysis caused by e155
Adult e155 animals showed a surprising degree of swimming and crawling capability, contrary to predictions based on previous work with vertebrate troponins. Biochemical studies show that in the absence of TnI vertebrate thin filaments are disinhibited (reviewed by Perry, 1999
). Extending this finding, extraction of TnI from permeabilized ventricular muscle leads to calcium-independent tension (Strauss et al., 1992
), and myocardium from mice in which the cardiac TnI gene had been deleted exhibited abnormally shortened sarcomeres and elevated resting tension (Huang et al., 1999
). The e155 mutation eliminates all but 9 of the 242 residues of ZK721.2, including all of the hallmarks of TnI, and therefore it is unlikely that the truncated protein could fulfill any roles of wild-type TnI. One possible explanation for the residual locomotion of e155 animals is redundancy within the activation process due to potential presence of thick- and thin-filament regulation, whereas another is overlapping expression of TnI isoforms.
Dual-regulation is prevalent throughout the animal kingdom (Lehman and Szent-Gyorgyi, 1975
), and early evidence suggested existence in C. elegans of thick-filament-based regulation or modulation (Harris et al., 1977
). Little is known about the specific roles of thick- and thin-filament regulatory proteins in dually regulated muscle, but available data, from studies with Limulus muscle, suggest that both regulatory systems need to be switched on before activation of actomyosin MgATPase and tension development can occur (Wang et al., 1993
). If dually regulated in the same manner as Limulus muscle, C. elegans body-wall muscle depleted of TnI should be capable of contracting and relaxing: thin filaments would be persistently disinhibited, and the thick-filament-based system would toggle on and off. The complete immobility of e155 worms depleted of the embryonic-larval TnI (F42E11.4) conflicts with this prediction and suggests that body-wall muscle is regulated solely by troponin, a possibility which does not exclude thick-filament-based modulation by a protein such as twitchin/UNC-22 (Benian et al., 1989
). Additionally, the loss of mobility, as well as diminution of body length, of e155 worms subjected to RNAi offers clear evidence that the embryonic-larval isoform can compensate for loss of the larval-adult isoform (ZK721.2/unc-27) and account for regulated contraction in body-wall muscle of e155 animals.
Paralysis caused by su142sd
An interesting question arising from the data is why su142sd, which eliminates the inhibitory region of TnI, is more deleterious than e155, a presumed null. The disparity likely reflects differing extents of compensation for the two alleles by other TnI isoforms, as well as true difference in effects of the mutant alleles. At a qualitative level, both mutations are associated with comparable alterations of the expression pattern of troponin isoforms, e.g., persistence of embryonic-larval TnI (F42E11.4) and TnT (mup-2/tnt-1/T22E5.5) transcripts in body-wall muscle in a minority of adults. Yet, the semidominance of su142sd, in the absence of haploinsufficiency, indicates that this mutant TnI can compete with wild-type TnI and hence that compensation by wild-type TnI should be less in su142sd animals than in e155 ones.
Although fully supportive of differing extents of compensation for su142sd and e155, the data are also compatible with a true difference between effects of the mutations. When depleted of the embryonic-larval body-wall TnI (F42E11.4), the su142sd worms were shorter than the e155 ones, an observation compatible with a greater degree of hypercontraction in the former. It remains possible that RNAi did not remove all traces of compensation by F42E11.4; however, the complete immobility of both e155 and su142sd worms following RNAi of F42E11.4 suggests at the functional level absence of significant compensation. This immobility likewise argues against meaningful compensation afforded by T20B3.2, transcripts of which were detected in the middle and posterior body-wall muscle of a minority of adult mutants.
Thus, the fragment encoded by su142sd, terminating at a position equivalent to Lys87 of rabbit fast TnI and Lys120 of human cardiac TnI, both competes with wild-type TnI and likely wreaks more damage than does the absence of TnI. The fragment's ability to compete in vivo agrees well with the structure of crystalline human cardiac troponin, in which TnI residues 42136 associate with TnT residues 203271 and TnC residues 93161 to form the IT-arm (Takeda et al., 2003
). Biochemical work substantiates an interaction in vitro between vertebrate TnT and the N-terminal half of TnI (Farah et al., 1994
; Van Eyk et al., 1997
).
The greater severity of the su142sd mutation in comparison with the null following RNAi may reflect participation of the N-terminal half of TnI in activation, i.e., the enhancement of actomyosin MgATPase in the presence of activating calcium to an activity exceeding that observed with actin-tropomyosin-myosin in vitro (Malnic et al., 1998
). In this sense, a parallel may be drawn between the severity of su142sd and the muscle degeneration caused by the Drosophila TnI heldup2 mutation, which replaces with valine an invariant alanine falling within the IT-arm and aligning with rabbit fast residue 25 and human cardiac residue 57 (Beall and Fyrberg, 1991
). The degeneration can be ameliorated by elimination of myosin filaments, as well as by other myosin mutations, suggesting that heldup2 promotes excessive actin-myosin interaction and force production (Beall and Fyrberg, 1991
; Kronert et al., 1999
).
Paralysis caused by su195sd
The most striking aspect of sarcomeric disarray and paralysis caused by su195sd is the extent to which the phenotype resembles that of the presumed null, e155, even though the su195sd mutation leaves intact all but the extreme C-terminus. Loss of TnI function caused by su195sd could suggest that the mutant protein simply fails to associate with the thin filament, but both the semidominance of the mutation and the mobility of su195sd worms subjected to RNAi of F42E11.4 argue against this view. Another possibility is that the extreme C-terminus is needed for the full inhibitory potential of TnI to be manifested. This view is supported by work with vertebrate TnI, even though the extreme C-termini of vertebrate and invertebrate isoforms differ in length and composition. For example, removal of the C-terminal 17 residues from cardiac TnI leads to diminished calcium sensitivity of force, and removal of 23 residues leads to increased sensitivity, as well as impaired ability of the truncated TnI to inhibit (Rarick et al., 1997
). Elimination of as few as 18 residues from the C-terminus of chicken fast skeletal TnI compromises inhibition of actomyosin MgATPase (Ramos, 1999
).
Biological relevance of the extreme C-terminus of TnI is reflected in several observations. Four missense mutations and an eight-residue deletion near the C-terminus of human cardiac TnI have been linked to cardiomyopathy (Kimura et al., 1997
; Morner et al., 2000
; Morgensen et al., 2003
). Cleavage of the C-terminal 17 residues from cardiac TnI ensues ischemia and reperfusion injury (McDonough et al., 1999
), and the steady-state force-calcium relation obtained with myocardium regulated by the truncated TnI exhibits both diminished peak force and depressed calcium sensitivity (Murphy et al., 2000
). The ability of the C-terminus to modulate TnI's inhibitory strength potentially is tapped in nature. Encoding the C-terminus of Drosophila TnI are two exons (exons 9 and 10) that are spliced in a mutually exclusive manner (Barbas et al., 1991
). The sequence encoded by exon 9 is detected only in adult isoforms and differs in two obvious respects from that of exon 10. The terminus generated by exon 9 is shorter by nine residues, and it lacks a motif (P/GD/EWR/SK) found in almost all other TnI isoforms of invertebrates and vertebrates, with notable exceptions being C. elegans isoform W03F8.1, expressed exclusively in the pharynx, and TnI of crayfish and scallop.
In summary, the rigid paralysis and sarcomeric disarray of the three mutants are consistent with unregulated contraction of the mutant sarcomeres, in which small portions of each myofibril shorten irregularly and independently from one another, thereby distorting the filament disposition. Semidominance of two of the alleles, in the absence of haploinsufficiency, highlights that mutant protein is synthesized and competes with wild-type isoforms. The exacerbated deficits exhibited by su142sd (Gln122stop) mutants strengthen the view that in vivo the N-terminal portion of TnI enhances force production. The deleterious effects of the su195sd (Glu207stop) allele point strongly to a role of the extreme C-terminus in TnI's inhibitory function.
| ACKNOWLEDGEMENTS |
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We gratefully acknowledge funding from National Institutes of Health grant 5-PO1-HL15835 to the Pennsylvania Muscle Institute (C.F.-A.), as well as from the Templeton Medical Research Foundation and the National Science Foundation (IBN 9985315) (T.A.). Nematode strains used in this work were provided by the Caenorhabditis Genetics Center, which is funded by the National Center for Research Resources of the National Institutes of Health.
Submitted on February 21, 2003; accepted for publication September 24, 2003.
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