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* Division of Infection and Immunity, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow, Scotland, United Kingdom;
Division of Structural Biology, Wellcome Trust Centre for Human Genetics, and
Oxford Centre for Molecular Sciences, Central Chemistry Laboratory, University of Oxford, Oxford, United Kingdom; and
Department of Physics, University of Surrey, Guildford, United Kingdom
Correspondence: Address reprint requests to Olwyn Byron, Tel.: 44-0-141-330-3752; Fax: 44-0-141-330-4600; E-mail: o.byron{at}bio.gla.ac.uk.
| ABSTRACT |
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| INTRODUCTION |
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An atomic structure of PLY is not yet available, although Kelly and Jedrzejas (2000a)
recently reported the successful crystallization of PLY complexed with a cholesterol analog. Electron microscopy (Morgan et al., 1994
), cryoelectron microscopy (Gilbert et al., 1999b
), and homology models (Rossjohn et al., 1998
) have provided the only structural information hitherto available. On the basis of its homology with PFO (48% sequence identity and 60% sequence similarity), PLY is thought to be a long rod-shaped molecule comprising four domains with overall dimensions of 110 Å x 50 Å x 30 Å. Its secondary structure is mainly composed of ß-sheet motifs (Rossjohn et al., 1998
), although domain 3 is thought to contain several short
-helices.
The most conserved region of the CBTs is a sequence of 11 amino acids (ECTGLAWEWWR, also referred to as the Trp-rich loop) at the base of the fourth domain, which is thought to be responsible for membrane binding (Watson et al., 1972
). Biological and biophysical studies have shed light on the specific mechanisms used by these toxins to bind to (Jacobs et al., 1998
, 1999
; Nakamura et al., 1995
; Tweten et al., 1991
) and further insert into (Palmer et al., 1996
; Shepard et al., 1998
; Shatursky et al., 1999
; Nakamura et al., 1995
; Heuck et al., 2000
) cell membranes, and on their cooperative self-organizing oligomerization (Morgan et al., 1995
, 1994
) fostering pore formation and subsequent cell lysis (Paton et al., 1993
).
Two distinguishable but dependent processes, membrane binding and protein oligomerization, collaborate in the pore-formation process. A mechanism for CBT pore formation consistent with accumulated biochemical and biophysical data was proposed by Gilbert (2002)
as follows: soluble monomeric toxin binds to the membrane in a cholesterol-dependent manner via the carboxy-terminal fourth domain. Dimerization of bound toxin is the first stage of either uni- or bidirectional oligomerization which can terminate with as many as 50 monomers forming a large (
350 Å diameter; Morgan et al., 1994
) assembly on the cell surface. The PFO prepore inserts into the membrane in a concerted action when two groups of three small
-helices in domain 3 refold to form two ß-hairpins capable of forming the lumen of the pore (Hotze et al., 2002
). An alternative model for PFO pore formation has been proposed by Rossjohn et al. (1997)
, in which toxin insertion precedes pore formation. As yet, equivalent data for PLY remain to be acquired.
The inhibition of thiol-activated pore-forming toxins by preincubation with cholesterol reported in the early 1970s by Watson et al. (1972)
provided the first evidence that this major constituent of eukaryotic cell membranes could be the receptor for this family of toxins (see Duncan and Schlegel, 1975
; Prigent and Alouf, 1976
; Johnson et al., 1980
, or for a more recent article, Morgan et al., 1996
). Preincubation with cholesterol was thought to saturate all available binding sites on the toxin, thwarting the further binding of the protein with the cell membrane. That these CBTs do not attack bacterial cell membranes (which contain ergosterol rather than cholesterol in their membranes) was also evidence in support of the above hypothesis. More recent studies focusing on the effects triggered by membrane binding (for example, monitoring cytokine expression and release of IL-1) of LLO preincubated with cholesterol have suggested that membrane association of the protein toxin-cholesterol complex takes place but without any sign of cell lysis or pore formation (Nishibori et al., 1996
; Yoshikawa et al., 1993
; Sibelius et al., 1996
). Further evidence supporting these results has been provided by Jacobs et al. (1998)
, who used immunoblot analysis and flow cytometry to study the binding and pore formation of LLO, demonstrating that preincubation of LLO with cholesterol does not influence the binding of this toxin to the cell membrane, but does affect the polymerization process leading to pore formation. In this article we present new results that further clarify the role played by cholesterol as the putative receptor for cholesterol-binding toxins in general and PLY in particular.
The lack of hydrophobic patches identifiable on either the PLY homology model surface or its domain interfaces was at first surprising, since they constitute a common mechanism for membrane disruption (Tweten, 1995
; Alouf and Geoffroy, 1991
). Instead a novel mechanism was proposed by Rossjohn and colleagues (Rossjohn et al., 1997
, 1998
; Gilbert et al., 1999b
). According to this mechanism, binding to cholesterol displaces the Trp-rich motif from its original position, which results in the formation of a hydrophobic dagger that inserts into the membrane and may contribute to membrane disruption. Alternatively, it has been suggested that monomeric PLY would just sit on the cell membrane (Ramachandran et al., 2002
), triggering its destabilization, and that the cooperative effect of further protein oligomerization may finally foster membrane disruption, after pore formation (Bonev et al., 2001
).
Several fluorescence studies with liposomes as model membranes have been carried out in order to gain understanding of the binding-insertion mechanisms used by CBTs. Nakamura et al. (1995)
found that the tryptophan fluorescence intensity of PFO changed when the toxin inserted into cholesterol-containing liposomes. In a more recent article, Shepard et al. (1998)
have monitored the changes in the PFO Trp fluorescence maximum upon membrane binding and insertion, and have found a fluorescence blue shift which indicates (Vivian and Callis, 2001
) that the environments of the Trp residues becomes more nonpolar. If the overall Trp fluorescence emission is attributed to the Trp residues in the Trp-rich loop, this indicates that this loop is moving from a polar to a hydrophobic environment upon binding/insertion. In addition, Heuck et al. (2000)
have studied the changes in PFO Trp fluorescence upon binding to cholesterol-containing liposomes as a function of cholesterol concentration. Based on these measurements, the authors propose a pore-formation mechanism which comprises the following steps: 1), domain 4 superficially binds to the membrane and finds its final position without being deeply embedded into the membrane core; 2), in response to the binding of domain 4, domain 3 undergoes a conformational change and inserts into the membrane; and 3), it then acts to foster oligomerization and further pore-formation. Interactions of domains 3 and 4 with the membrane are reported to be strongly dependent on the concentration of cholesterol in the liposome membrane.
More recently, Kelly and Jedrzejas (2000b)
investigated the characteristics of binding between a water-soluble cholesterol analog (ws-chol) and PLY in solution, and found differences in the CD spectra, hydrodynamic properties, and Trp fluorescence of the ws-chol-PLY complex with respect to monomeric PLY. However, the interaction of ws-chol with PLY may be completely different from that of true cholesterol because of significant structural differences (Fig. 1) between the two ligands. Therefore the results of Kelly and Jedrzejas might not be truly relevant to the understanding of the role of cholesterol in CBT pore-formation mechanisms.
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The surface of phosphatidylcholine/cholesterol/dicetyl phosphate liposomes has been shown to thicken after addition of PLY-TNB, which has been interpreted as being due to the binding of PLY-TNB monomers to the liposomal surface without forming any pores (Gilbert et al., 1999a
). In contrast, the surface of the liposomes thins when attacked by wild-type (WT) PLY, clear evidence of the pore-formation process taking place. The same thinning was observed after addition of DTT to the sample containing liposomes and PLY-TNB, which demonstrated that the thinning was due to pore formation.
| MATERIALS AND METHODS |
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-phosphatidylcholine from frozen egg yolk, purity by TLC: 99%), dicetyl phosphate, cholesterol, ergosterol, lanosterol, and deuterated water (99.9%) were from Sigma. Deuterated cholesterol (24, 24, 25, 25, 26, and 26-D, 95% deuteration) was from Medical Isotopes (Pelham, NH).
Protein expression, purification, and derivatization
PLY was overexpressed in M15 E. coli, using a protocol described elsewhere (Gilbert et al., 1998
). Protein purification was performed using hydrophobic and ion-exchange columns on a BioCAD perfusion chromatography workstation (Applied Biosystems). Protein purity (>90%) was assessed by SDS PAGE under reducing conditions. The protein was immediately derivatized after purification using Ellman's reaction in which the only free thiol group in PLY at residue C428 is reacted with dithio(bis)nitrobenzoate to produce pneumolysin-thionitrobenzoate, i.e., PLY-TNB (Gilbert et al., 1998
).
Liposome manufacture
Liposomes were prepared using a modification of a procedure described earlier (Gilbert et al., 1998
). The liposome mixture (phosphatidylcholine/sterol/dicetyl phosphate in a molar ratio 10:x:1, where sterol is either cholesterol or ergosterol and x ranges from 0 to 10) was firstly dissolved in a 1:1 (v/v) chloroform/methanol solution. For neutron reflectivity experiments the molar concentration of cholesterol was the same as that of phosphatidylcholine (i.e., x was 10). The absolute molar concentration was such that when dissolved in the final volume of aqueous buffer the solution had a total lipid plus cholesterol molarity of 2 mM. The solution was then dried under nitrogen and resuspended in CHB (50 mM NaH2PO4 and 200 mM NaCl, pH 4.8). Finally, the lipid solution was vortexed, sonicated (using a bath sonicator at 45°C for 45 min), repeatedly extruded through 0.2 µm filters and centrifuged for 20 min at 3000 g. The liposomes were determined to be spherical with an average size of 50 ± 10 nm by dynamic light scattering using a DynaPro MS800 single-angle detector instrument (Protein Solutions, Lakewood, NJ). Two different types of cholesterol were employed: standard hydrogenated and deuterated cholesterol (24, 24, 25, 25, 26, and 26-D; from Medical Isotopes, Pelham, NH).
Activity assays
PLY activity was assayed using a hemolytic assay (Walker et al., 1987
). 50 ml of PBS buffer (125 mM NaCl, 1.5 mM KH2PO4, 8 mM Na2HPO4 and 2.5 mM KCl, pH 7.6) were loaded into the cells of a 96-well plate. Cholesterol/PLY solutions were prepared using a 7 µM PLY stock solution in PBS and stock cholesterol, ergosterol and lanosterol solutions in 100% ethanol. The samples were then vortexed and incubated for 5 min. Samples to be assayed were loaded into the first cell of each row and double-diluted across the plate so that the first column contained the more concentrated sample and the last column contained the most dilute. 1 ml of whole sheep blood was centrifuged and its pellet resuspended in 20 ml of PBS buffer and then loaded (50 µl) into each well. Lastly, the plate was incubated at 37°C for 30 min. The red blood cells that are not lysed sink to the bottom of the well and form a clear red dot in an otherwise transparent solution. On the other hand, the lysed cells release their hemoglobin, giving the solution a red color that provides a way of monitoring the protein lysing activity. Hemolytic units (HU) were expressed as the reciprocal of the dilution at which 50% lysis was observed.
Fluorescence
Fluorescence spectra were taken at room temperature (20°C) using a SpectraMax (Molecular Devices, Sunnyvale, CA) fluorimeter. Tryptophan residues were excited at a wavelength of 290 nm, and their fluorescence emission scanned from 300 to 520 nm. The fluorescence emission intensity was taken from the maximum of the spectra recorded for the different cholesterol/PLY ratios (between 350 and 340 nm). The protein was used at an initial concentration of 7 µM in PBS.
Neutron reflectivity experiments
Specular neutron reflectivity studies were performed on the SURF reflectometer at the ISIS spallation neutron source, Rutherford Appleton Laboratory (Didcot, UK). A standard instrument configuration was used and data collection and reduction proceeded as described by Penfold (1991)
and Penfold et al. (1987)
. Samples were housed in a solid/liquid cell (fully described by Marsh et al., 1999
). The silicon block through which the neutrons travel is a single polished crystal of size 25 mm x 51 mm x 127 mm, presenting a [111] plane to the adsorbed liquid. The silicon block surface facing down into the trough was cleaned by immersion into a mixture of 90% (v/v) sulphuric acid and 10% hydrogen peroxide heated to 100°C for 10 min. This procedure generated an extremely hydrophilic SiO2 layer on the surface of the block that was assessed by its ability to retain a layer of water when inclined vertically.
Solvents of three different neutron scattering length densities (or contrasts) were used. The contrast is the result of the large difference in neutron scattering length density between deuterium and hydrogen (see above). Using a combination of deuterated and protonated solvent, different contrasts can be obtained that give different reflectivity profiles whereas the interface remains unchanged. The contrast solvents used were: PBS buffer made with 100% D20; PBS buffer made with 100% H20; and PBS buffer made with 42.3% (w/v) D20, which has the same neutron scattering length density as the silicon substrate. The calculated scattering length densities of the three solvents are 6.35 x 106 Å2, 0.56 x 106 Å2, and 2.07 x 106 Å2, respectively.
| RESULTS |
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-OH group on the sterol C-3 atom (Fig. 1) is essential for its inhibiting activity, whereas other compositional changes have been shown to reduce its effectiveness (see Smyth and Duncan, 1978
-OH, and a hydrogen atom missing from C-8) whereas lanosterol differs more in its ring structure. More different still is water-soluble cholesterol (Kelly and Jedrzejas, 2000a
The inhibition of PLY by these sterols was investigated using a hemolytic assay (Walker et al., 1987
), the results of which are summarized in Table 1. Derivatization of PLY with TNB abolished its measurable activity. Twenty-five percent of WT activity could be restored by the addition of DTT. The sterols in this assay were solubilized in 10% (v/v) ethanol (EtOH). Neither EtOH nor EtOH plus cholesterol lysed red blood cells. The activity of PLY was unaffected by EtOH but was completely abolished by cholesterol. Ergosterol reduced the toxin activity by 50%, whereas lanosterol was a completely ineffective inhibitor.
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-helix at the base of domain 3 and the eighth is positioned at the top of domain 1, although neither of these tryptophans is solvent-exposed in the model. The fluorescence maximum in Fig. 3 at 350 nm suggests that the fluorescence is mainly produced by Trp residues in a polar environment (see Vivian and Callis, 2001
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50% ß-structure (the rest being random coil apart from 7% helix; Epand et al., 2001
-helices in domain 3 to refold to form two ß-hairpins upon membrane insertion (Shatursky et al., 1999
Interestingly, Epand et al. (2001
, 2002
) based their identification of a putative cholesterol-binding motif on earlier work by Li and Papadopoulos (1998)
, who postulated a universal cholesterol-binding motif of the form -L/V-(X)15-Y-(X)15-R/K-. This motif occurs four times in PLY (residues1117, 144152, 240244, and 327337; see Table 2 and Fig. 6), and in fact is not found in the position homologous with the putative cholesterol receptor in NAP-22. The four motifs are differentially conserved across the sequences of 16 cholesterol-binding toxins (Table 2), PLY being the only toxin in the list with all four motifs. PFO has two of the four motifs. In fact, a total of 17 such motifs can be identified in the list of 16 CBT sequences: some motifs are found only in one protein (e.g., Motif 2 in Table 2 occurs in only one of the six sequences, PLY), whereas others are found in many (e.g., Motif 1 in Table 2 occurs in nine of the 16 sequences).
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Neutron reflectivity experiments
Small-angle neutron scattering studies of the effect of PLY on model membranes, in the form of liposomes, have been described by Gilbert et al. (1999a)
. The liposome surface was shown to thicken after addition of PLY-TNB, which has been interpreted as being due to the binding of PLY-TNB monomers. By contrast, addition of WT PLY was shown to thin the liposomal surface, providing clear evidence of the pore-formation process that was taking place. The same thinning was observed upon addition of DTT to the sample containing liposomes and PLY-TNB, which accordingly confirmed that the thinning was due to pore formation. The authors proposed that changes in the structure of the membrane upon binding of monomeric PLY increase the efficiency of oligomerizationwhich, accordingly, triggers pore formation.
In this article we report a specular neutron reflectivity (NR) experiment performed to obtain additional information on the mechanism of interaction of PLY with model membranes. Specular reflectivity experiments are sensitive to the difference in neutron scattering density between regions of sample in the direction perpendicular to the surface of the sample, and therefore should be sensitive to changes in the structure of the bilayer due to the presence of the PLY. The wavelength of the cold neutrons used in the NR study (a few tenths of a nanometer) determines the length scales probed by the experiment. Typically NR is sensitive to structural features perpendicular to the plane of the sample with length scales ranging from a few Å to 500 Å. Neutrons are particularly suited to studying organic films because their penetration power is larger than, for example, x rays, and so they are able to provide data on buried interfaces.
Below the adsorbing block surface is a PFTE base block from which a section has been cut to act as a trough containing the liquid (in this case, solutions of liposomes). The neutrons enter through one of the block faces and are reflected from the silicon/liquid interface. If the difference in neutron scattering length density at successive interfaces is sufficient, the technique will be sensitive to the thickness and composition of the layers comprising the sample. First, the silicon-oxide layer was characterized by measuring the reflectivity profile of the silicon block with the three contrast-matched liquids (see Materials and Methods). Using a one-layer model, the thickness of the silicon oxide was found to be 8 ± 3 Å with a scattering length density (SLD) of 3.41 x 106 Å2 and a roughness of 5 Å. This was then fixed for all the fits subsequently performed for the more complex reflectivity data.
We were interested in characterizing the main features of the bilayer and in particular, differences in the bilayer structure due to the presence of PLY. After characterization of the SiO2 layer, a 2 mM SH liposome solution (
50 ml) was poured into the trough. Once in contact with the hydrophilic SiO2 layer, the liposomes collapse and give rise to a unilamellar phospholipid bilayer. This bilayer was characterized by measuring the neutron reflectivity profiles at three contrasts. We fitted first the profiles with a one-layer model. At the three contrasts used (the case of D2O is shown in Fig. 7) we measured the bilayer thickness to be 36 ± 5 Å, with an SLD that changes depending on the contrasts used. For the D2O case shown in Fig. 7, the SLD of the layer was 2.12 x 106 Å2. This value is compatible with the value found by Johnson et al. (1991)
. The roughness of the layer was
6 Å. The values of the SLDs for the three contrast-matched liquids are consistent in all three cases with 30% of the liquids penetrating the bilayer, considering that the SLD of the bilayer is 0.2 x 106 Å2. This is compatible with findings of others (Charitat et al., 1999
; Johnson et al., 1991
). An 8 Å-thick layer of water was included in the fit with SLD depending on the percentage of D2O in the buffer. We also performed a more refined fit to the data with a more complicated model to take into account the slightly different SLD of tail and head layers. Although we could obtain higher quality fits in some cases, these did not change the main results of our fits: the total thickness of the bilayer and the amount of water in it. To properly discern the different structures (water, tails, and heads) we will need to perform more experiments. The goal of our experiment was to determine the structure of the bilayer after the insertion of the toxin, so we have used a one-layer model for the bilayer in our fit (Fig. 8). When the bilayer contained deuterated cholesterol we observed that the total thickness of the bilayer was 42 ± 4 Å with a higher SLD owing to the deuteration.
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More experiments are needed to confirm these observations, and to further investigate the interaction of the toxin with bilayer, its level of penetration, and the formation of pores. Moreover, additional work is required to determine whether the deuterated cholesterol layer inside the lipid bilayer changes position after toxin insertion.
| DISCUSSION |
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1:3000, far in excess of the saturation point we have measured for standard cholesterol.
In addition, we employed tryptophan emission fluorescence spectroscopy to confirm the 1:1 stoichiometry of the cholesterol-PLY complex. In the same experiments we estimated the binding constant to be 400 ± 100 nM, in agreement with value measured previously by Ohno-Iwashita and colleagues for PFO (Ohno-Iwashita et al., 1988
). That the tryptophan environment becomes more nonpolar upon binding cholesterol, reinforces the hypothesis that cholesterol interacts with PLY by specifically binding to the highly conserved Trp-rich loop. However, Ohno-Iwashita and colleagues determined that there are two cholesterol-containing binding sites for PFO in the membranes of sheep and human erythrocytes (Ohno-Iwashita et al., 1988
). The high-affinity (Kd
2 nM) site comprises
3% of the total binding sites, whereas the majority have a 100-fold lower affinity (Kd
220 nM). Are we measuring an average of these affinities for PLY? What is it about the binding sites for PFO that modulates the apparent binding affinity? Ohno-Iwashita et al. speculated that the accessibility of the toxin to the cholesterol in the high-affinity binding sites must not be restricted in the same way as for the low-affinity sites. Perhaps the high-affinity binding site is outer-leaflet cholesterol, whereas inner-leaflet cholesterol forms the low-affinity sitethe asymmetry of the leaflets accounting for the difference in number of high- and low-affinity sites. Alternatively, the preferential localization of glycosphingolipids and sphingomyelin within the outer leaflet of lipid rafts could perturb access to cholesterol within raft domains: the high- and low-affinity sites may correspond to free and lipid-raft cholesterol, respectively. A further alternative model (Gilbert, 2002
) ascribes the low-affinity binding site to cholesterol monomers dissolved in the membrane, whereas the high-affinity site is a tail-to-tail transbilayer cholesterol dimer. In the titration experiments reported here we observed essentially a low-affinity binding event, consistent with binding to cholesterol monomers.
Finally, we used neutron reflectivity to investigate the interaction of PLY with a phospholipid bilayer. PLY was shown to interact with the membrane by producing an effective change in the overall membrane thickness, by altering its neutron scattering length density and by forming a further layer of different scattering length density atop the phospholipid bilayer.
| ACKNOWLEDGEMENTS |
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The authors acknowledge support for neutron beam time from the Council for the Central Laboratory of the Research Councils (grants 11606 and 11607). Marcelo Nöllmann is the recipient of a Wellcome Trust Studentship.
Submitted on May 29, 2003; accepted for publication October 10, 2003.
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