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Department of Molecular Physiology and Biophysics, University of Vermont, College of Medicine, Burlington, Vermont 05405-0068
Correspondence: Address reprint requests to Christopher L. Berger, Tel.: 802-656-0832; Fax: 802-656-0747; E-mail: christopher.berger{at}uvm.edu.
| ABSTRACT |
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| INTRODUCTION |
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![]() | SCHEME 1 |
Of particular importance to the current work is the enhancement of intrinsic tryptophan fluorescence in myosin upon nucleotide binding (*) and hydrolysis of ATP (**), which have been exploited to examine the rates of the reaction steps in skeletal and smooth muscle myosin in both the absence and presence of actin (Lymn and Taylor, 1971
; Bagshaw and Trentham, 1974
; Bagshaw et al., 1974
; Marston and Taylor, 1980
; Rosenfeld and Taylor, 1984
; Cremo and Geeves, 1998
). In this scheme, myosin initially binds ATP, resulting in the first level of intrinsic tryptophan fluorescence enhancement (*). Next, the rapid and reversible hydrolysis of ATP results in an additional enhancement of intrinsic tryptophan fluorescence (**). After hydrolysis, inorganic phosphate and ADP are sequentially released, with an associated decrease in intrinsic tryptophan fluorescence at each step. The phosphate-release step is rate-limiting and shifts myosin from a weak to strong actin binding conformation. It is this step that is believed to be associated with force generation during muscle contraction. The nucleotide-free complex (the "rigor" state) remains strongly bound to actin until dissociated by the binding of ATP to start a new contractile cycle. Therefore, although shown in linear form, Scheme 1 describes the cyclic process of nucleotide binding, hydrolysis, and product release by myosin.
The structural basis of these nucleotide-dependent intrinsic fluorescence changes in myosin II has been previously investigated in skeletal muscle (Park et al., 1997
), smooth muscle (Yengo et al., 1998
, 2000
), and the slime-mold Dictyostelium discoideum (Batra and Manstein, 1999
; Kovács et al., 2002
; Málnási-Csizmadia et al., 2000
). In all three isoforms, a single tryptophan residue (W501 in D. discoideum nonmuscle myosin II, W510 in skeletal muscle myosin, and W512 in smooth muscle myosin) has been shown to be the largest contributor to the observed intrinsic fluorescence enhancement associated with nucleotide binding and/or hydrolysis. This conserved tryptophan is located in the relay loop, a region of myosin thought to be critically involved in the conduction and amplification of structural changes at myosin's active site to the lever arm and actin-binding interface (reviewed by Houdusse and Sweeney, 2001
). W501 has been shown to be the only tryptophan residue to participate in the intrinsic fluorescence enhancement associated with the ATPase cycle in D. discoideum nonmuscle myosin II (Batra and Manstein, 1999
; Málnási-Csizmadia et al., 2000
). The situation has been demonstrated to be more complicated in skeletal muscle myosin, with two tryptophans unique to this isoform (W113 and W131) potentially contributing to the overall enhancement of intrinsic fluorescence as well as W510 (Park and Burghardt, 2000
; Kovács et al., 2002
). It remains to be shown that W512 is uniquely sensitive to nucleotide binding and hydrolysis in smooth muscle myosin.
In addition to W512's sensitivity to nucleotide, we have previously demonstrated that, although not responsive to nucleotide binding, W546 is sensitive to actin binding (Yengo et al., 1998
), whereas tryptophans 441, 597, and 625 are all insensitive to both nucleotide and actin binding (Yengo et al., 2000
, 1998
).The catalytic motor domain of smooth muscle myosin (Fig. 1) contains seven tryptophan residues (29, 36, 441, 512, 546, 597, and 625). Thus the potential contributions of W29 and W36 to the observed intrinsic fluorescence changes in smooth muscle myosin upon nucleotide binding and hydrolysis are as of yet uncharacterized. In this study, we have generated a W512 knockout construct of smooth muscle myosin (W512 KO-MDE) that contains the six endogenous tryptophans other than W512, which was conservatively mutated to phenylalanine. We also constructed two mutants, W29-MDE and W36-MDE, each of which contains a single endogenous tryptophan at residue 29 or 36, respectively. The W512 KO-MDE demonstrates a small quench in the presence of nucleotide. Therefore, the intrinsic fluorescence enhancement of smooth muscle myosin is not solely due to the conserved tryptophan residue (W512) that resides in the relay loop. Subsequently, we investigated the possible contributions to the intrinsic fluorescence enhancement of smooth muscle myosin by W29 and W36, which have not been examined directly before. Both residues, which reside near the SH3 domain at the N-terminus of the smooth muscle myosin heavy chain and are unique to this isoform, are sensitive to nucleotide binding, albeit less than W512 in the relay loop.
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| METHODS |
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Protein expression and purification
MDE cDNA was cloned into the pVL-1392-NE baculovirus transfer vector (Invitrogen, Carlsbad, CA) containing a FLAG affinity tag (DYKDDDDK), transfected into Sf9 cells with Baculo-Gold (BD Biosciences Pharmingen, Boston, MA), amplified, then expressed and purified on a FLAG affinity column (Sigma, St. Louis, MO) to yields of 13 mg per 1 x 109 Sf9 cells. The final product was stored in MDE buffer containing 10 mM MOPS, 20 mM KCl, 1 mM EGTA, 1 mM NaN3, and 1 mM DTT, pH 7.4, RT.
Functional assays
Actin-activated ATPase rates were determined by an enzyme-linked assay as previously described (Furch et al., 1998
; De la Cruz et al., 2000
) in a modified ATPase buffer (10 mM MOPS, 25 mM KCl, 2 mM MgCl2, 1 mM EGTA, 1 mM DTT, pH 7.0, 25°C). Purified MDE was assayed at a concentration of 14 µM in the presence of 0120 µM actin. The average actin-activated ATPase rates of the MDE preparation were plotted as a function of actin concentration and fit with a nonlinear least-squares method using OriginLab software (Northampton, MA). Values of Vmax and KM were calculated using Michaelis-Menton kinetics.
Fluorescence measurements
Steady-state tryptophan fluorescence measurements were made essentially as described (Yengo et al., 2000
) using a Quantamaster fluorometer (Photon Technology International, South Brunswick, NJ) equipped with a 75 or 150 W Xenon arc lamp as an excitation source, excitation/emission monochrometers, and a WG320 cutoff emission filter. Tryptophan emission spectra were measured by exciting the sample at 295 nm and collecting the emitted fluorescence at 305400 nm. Slit widths were set at a resolution of 12 nm for excitation and 45 nm for emission. Fluorescence emission spectra were measured for each of the purified proteins in MDE buffer (10 mM MOPS, 20 mM KCl, 1 mM EGTA, 1 mM NaN3, 1 mM DTT, pH 7.4, RT) in the presence of saturating amounts of ADP (20200 µM) or ATP (2 mM) as well as in the absence of nucleotide. All fluorescence spectra were corrected for Raman scatter and background fluorescence.
Acrylamide quenching was used to determine the degree of solvent exposure of W29 and W36 in the presence and absence of 2 mM ATP as previously described (Yengo et al., 2000
). The decrease in fluorescence intensity at the emission maximum (
max) of the steady-state emission spectrum was measured as a function of increasing acrylamide concentrations ([Q]). The fluorescence intensity in the absence of quencher (F0) divided by the fluorescence intensity in the presence of quencher (F) was used to quantify the relative change in fluorescence from acrylamide quenching (F0/F). F0/F was plotted as a function of [Q] and fit to the Stern-Volmer relationship, taking into account both static (V) and dynamic (KSV) quenching constants: F0/F = (1 + KSV[Q])(expV[Q])(Eftink and Ghiron, 1976
). The static quenching value, which determines the upward curvature of the Stern-Volmer plot, was previously determined to be V = 3.0 M1 (Yengo et al., 2000
). Therefore, the dynamic quenching constant was determined by fitting the Stern-Volmer plots by a nonlinear least squares method using OriginLab software. The bimolecular quenching constant was calculated by normalizing the measured dynamic quenching constant to the observed tryptophan average lifetime (kq = Ksv/
avg).
Tryptophan lifetime measurements in the presence and absence of 0.2 mM ADP or 2 mM ATP were measured with a Photon Technology International (London, Canada) Laserstrobe system with a nitrogen-pumped dye laser emitting at 590 nm and frequency doubled to 295 nm. Total fluorescence emission was detected through a WG320 cutoff filter using a stroboscopic detection system with a time-delay gated photomultiplier tube. The instrument response function was collected by determining the peak time delay of light scattered at 295 nm by nonfat dry milk solids and used to deconvolute the experimental time-resolved emission decays using proprietary software from Photon Technology International. The data were best fit to a two-exponential decay. The time-resolved quantum yield was calculated relative to the natural tryptophan lifetime (16 ns). Quantum yield and bimolecular quenching constant calculations were made using an amplitude weighted average lifetime value (
avg = (
1 x ampl1)/(ampl1 + ampl2) + (
2 x ampl2)/(ampl1 + ampl2)).
Analysis of protein crystal structures
The three-dimensional structures of smooth muscle myosin MDE in the presence of
(1BR1.pdb) and ADP · BeFx (1BR4.pdb) were visualized and analyzed in terms of intramolecular distances and B-factor values in Swiss-PDB Viewer (GalaxoSmithKline, Middlesex, UK). The solvent-accessible surface areas of W29 and W36 were calculated using a script in XPLOR (Molecular Simulations, San Diego, CA), which describes the center of a spherical solvent molecule of radius 1.6 Å rolling along the protein surface.
| RESULTS |
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As seen above, the steady-state response of W29-MDE to nucleotide binding exhibits both a decrease in fluorescence intensity and a blue shift in its emission maximum. The presence of these two characteristics together is paradoxical, since a blue shift is often indicative of a change in conformation resulting in a more hydrophobic environment, whereas a decrease in fluorescence is often indicative of a conformational change resulting in a more hydrophilic environment, around the tryptophan residue. Acrylamide quenching is dependent upon the number of collisions between the tryptophan and acrylamide molecules in the surrounding solvent. Thus the more solvent accessible the tryptophan, the more easily it is quenched by interactions with acrylamide. We examined the solvent exposure of W29 and W36 in different nucleotide states by acrylamide quenching experiments. The Stern-Volmer relationship was used to quantitatively assess the amount of acrylamide quenching (Fig. 3). The Stern-Volmer constant of W36-MDE was not dependent on nucleotide as KSV = 2.04 M1 in the absence of nucleotide and KSV = 2.17 M1 in the presence of 2 mM ATP. In contrast, the Stern-Volmer constant of W29-MDE decreased 32% from 6.79 M1 in the absence of nucleotide to 4.63 M1 in the presence of 2 mM ATP. When normalized to the average excited-state lifetime (
avg) (Fig. 4, Table 3), the dynamic Stern-Volmer constant can be used to calculate the underlying bimolecular quenching constant (kq = KSV/
avg), a measure of the collisional rate between the fluorophore and solvent quencher molecules. The bimolecular quenching constants were determined to be 8.0 x 108 M1s1 and 4.8 x 108 M1s1 for W29-MDE in the absence and presence of ATP, respectively, and 2.8 x 108 M1s1 and 2.6 x 108 M1s1 for W36-MDE in the absence and presence of ATP, respectively (Table 3). These data are consistent with the conclusion that W29 becomes less accessible to solvent in the presence of ATP, whereas the accessibility of W36 is largely unchanged. Thus, in agreement with the observed steady-state fluorescence emission maxima data, the acrylamide quenching results suggest that W29 is in a less polar, less solvent-exposed environment in the nucleotide states that bind weakly to actin (M·ATP and M·ADP·Pi) relative to the strongly bound nucleotide free state of the ATPase cycle.
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avg/
0), where the intrinsic lifetime (
0) is assumed to be 16 ns (Lakowicz, 1983| DISCUSSION |
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Functional properties of WT-, W512 KO-, W29-, and W36-MDE
Michaelis-Menton kinetic constants for the actin-activated ATPase activity of WT-MDE were previously reported (Yengo et al., 2000
) and repeated for this study. The W512 KO-MDE and W29-MDE constructs show reduced values of Vmax relative to the WT-MDE molecule, whereas W36-MDE shows an increased value of Vmax relative to WT-MDE (Table 1). However, all four constructs (WT-MDE, W512 KO-MDE, W29-MDE, and W36-MDE) demonstrate a significant actin-activated ATPase activity, and all three mutants show decreased KM values relative to WT-MDE. Although the Vmax and KM values vary between the constructs (Table 1), the catalytic efficiencies of WT-MDE, W512 KO-MDE, and W29-MDE are comparable, whereas the W36-MDE is
10-fold more efficient than even the WT-MDE. Likewise, Pi release is the rate-limiting step of the ATPase for all of the smooth muscle myosin constructs used in our studies (manuscript submitted). Thus, although the mutant proteins may have small variations in rate or equilibrium constants between specific states of the ATPase cycle (M. van Duffeler, L. R. Chrin, and C. L. Berger, unpublished), the overall catalytic cycle is quite similar for all the constructs of smooth muscle myosin used in this study.
Contribution of W29 and W36 to the overall intrinsic fluorescence changes in smooth muscle myosin
As demonstrated previously (Yengo et al., 2000
) and in this work, W512 is one of the major contributors to changes in intrinsic fluorescence during the ATPase cycle of smooth muscle myosin. The corresponding residues in the relay loops of myosin II from skeletal muscle (W510, (Park and Burghardt, 2000
)) and the slime mold D. discoideum (W501, (Batra and Manstein, 1999
; Málnási-Csizmadia et al., 2000
)) have also been shown to be the primary contributors to the nucleotide-dependent changes in intrinsic tryptophan fluorescence in these isoforms, and in the case of myosin II from D. discoideum, W501 has been shown to be the only endogenous tryptophan in the motor domain that is sensitive to nucleotide binding (Málnási-Csizmadia et al., 2000
). Likewise, W510 has been proposed to be the sole contributor to the nucleotide-dependent changes in tryptophan fluorescence for skeletal muscle myosin (Park and Burghardt, 2000
). However, when two tryptophans are introduced into the D. discoideum motor domain at positions 113 and 131, which correspond to those uniquely present in vertebrate skeletal muscle myosin, these residues also contribute to the observed nucleotide dependent changes in intrinsic fluorescence for that isoform, albeit to a lesser extent than W510 (Kovács et al., 2002
). Thus, whereas the conserved tryptophan residue at position 512 of the relay loop in smooth muscle myosin appears to be a major contributor to nucleotide-dependent changes in intrinsic fluorescence as in all isoforms of myosin, isoform-specific differences also exist resulting from the presence of unique nonconserved tryptophans in other conformationally sensitive regions of the myosin molecule. Such isoform-specific tryptophan residues may play a role in the response of smooth muscle myosin in nucleotide binding and hydrolysis, and provide new information regarding structural changes associated with specific steps of the ATPase cycle.
Unlike W512-MDE, which shows a large increase in intrinsic fluorescence in response to both ADP (30%) and ATP (36%) when compared to the nucleotide free state (Yengo et al., 2000
), W512 KO-MDE shows a small decrease in intrinsic fluorescence in response to both ADP (3%) and ATP (6%) when compared to the nucleotide free state. This provides evidence for the existence of intrinsic fluorescence contributions from the previously uninvestigated tryptophan residues, W36 and W29 in smooth muscle myosin, given that W441, W546, W597, and W625 have all been previously shown to be insensitive to nucleotide binding (Yengo et al., 2000
). We found that W36-MDE also shows a small decrease in intrinsic fluorescence in response to both ADP (3%) and ATP (8%) when compared to the nucleotide free state. Thus, given these small changes, in the presence of the other six endogenous tryptophans, W36 is unlikely to contribute significantly to the observed nucleotide-dependent changes in intrinsic fluorescence of the wild-type molecule. However, W29-MDE exhibits a large quench in intrinsic fluorescence in response to both ADP (21%) and ATP (29%), and therefore is likely to contribute substantially to the nucleotide-dependent intrinsic fluorescence changes observed in both the WT- and W512 KO-MDE molecules. Thus, the intrinsic fluorescence of tryptophans W512, W29, and W36 are all sensitive to nucleotide binding in smooth muscle myosin.
Structural basis for nucleotide-dependent changes in W29 and W36 intrinsic fluorescence
The decrease in fluorescence intensity is accompanied by a spectral blue shift upon nucleotide binding in W29-MDE (Table 2, Fig. 2). A spectral blue shift is often indicative of a conformational change to a more hydrophobic environment, whereas a decrease in fluorescence intensity is often indicative of a conformational change to a more hydrophilic environment. This paradox can be resolved by collisional quenching experiments, which are a measure of the solvent accessibility of the fluorophore. The Stern-Volmer and bimolecular quenching constants of W29-MDE both decrease upon ATP binding as compared to the apo state (Table 3, Fig. 3), consistent with the observed blue shift of W29 fluorescence upon nucleotide binding. These results indicate a decrease in solvent exposure of W29, and thus a decrease in solvent relaxation of the tryptophan residue in the more buried state. There is also a small decrease in fluorescence intensity without a spectra shift upon ATP binding for W36 (Table 2, Fig. 2). The Stern-Volmer constants and the bimolecular quenching constants are not nucleotide-dependent (Table 3, Fig. 3), therefore the solvent accessibility of W36 does not change upon ATP binding. The relatively low Stern-Volmer and bimolecular quenching constants, as well as the relatively blue-shifted emission maxima, suggest that both W29 and W36 are predominantly buried in the smooth muscle myosin molecule. Analysis of the smooth muscle myosin MDE crystal structures in the presence of
and BeFx show that the W29 and W36 indole rings are 39% and 1.5% exposed to the solvent, respectively. Interestingly, the B-factor for the W29 residue is relatively high, suggesting heterogeneity in the position of this side chain despite being largely buried in the protein structure, whereas the B-factor for the W36 residue is relatively low as expected. These results are consistent with our observations that both tryptophan residues are not easily quenched by solvent interactions, with W36 being more protected than W29. The increased dynamics of the W29 side chain may reflect the ability of this region of the molecule, a loosely structured loop, to adopt multiple conformations. Clearly, our data strongly support such a possibility.
Decreases in steady-state fluorescence emission can arise from a combination of ground- and excited-state quenching mechanisms, whereas time-resolved emission decays are sensitive only to excited-state relaxation phenomena. Therefore, we also measured the fluorescence lifetimes of both W29 and W36 (Table 3). Consistent with the steady-state observations, the number of excited-state tryptophans decreases slightly for W36 and decreases substantially for W29, as indicated by the peak intensity of the fluorescence emission decay profile (Fig. 4). W36-MDE time-resolved fluorescence emission decays are not nucleotide-dependent (Table 3), indicating that the fluorescence of W36 is quenched predominantly by a ground-state mechanism upon nucleotide binding. In contrast, time-resolved quantum yield determinations of W29 show a 20% decrease upon nucleotide binding, but no difference is observed whether the nucleotide is ADP or ATP (Table 3). This result is consistent with an excited-state mechanism responsible for the steady-state fluorescence quench observed upon nucleotide binding (
20%). The additional
10% decrease in intrinsic fluorescence observed under steady-state conditions upon the binding of ATP relative to ADP by W29-MDE appears to involve an additional ground-state quenching mechanism as there is no observed difference in the excited-state quantum yield. The extension of this is that the ATP binding event alters the W29 ground state so that it is less excitable than in the presence of ADP.
The indole ring of tryptophan has the potential to be quenched by neighboring residues, and the degree of quenching is dependent on both the orientation and distance between the two side chains. Within the sequence surrounding the W29 tryptophan in both the
(Fig. 5) and ADP · BeFx crystal structures (Dominguez et al., 1998
), K32 is a charged residue within 45 Å of the face of the indole ring of W29. Therefore, one possibility is that the observed quench in W29 fluorescence may be due to the interaction of K32 with the Pi electrons of the indole ring of W29. Thus, W29 and K32 may alter their orientation and molecular distance with respect to one another, resulting in different levels of quenching in different states of the ATPase cycle. Alternatively, other residues may be involved since W29 is located in a conformationally sensitive loop of the smooth muscle myosin molecule. It will be interesting to examine other smooth muscle myosin structures as they become available for possible interactions between W29 and other amino acid side chains such as K32.
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structure (Dominguez et al., 1998
smooth muscle myosin structure, thought to be in a prepower stroke state (Dominguez et al., 1998| ACKNOWLEDGEMENTS |
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This work was supported by a grant to C.L.B. from the National Institutes of Health (HL63798).
| FOOTNOTES |
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Submitted on April 13, 2004; accepted for publication May 14, 2004.
| REFERENCES |
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