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* Boston Biomedical Research Institute, Watertown, Massachusetts; and
Asbury Centre for Structural Molecular Biology and School of Biomedical Sciences, University of Leeds, Leeds, United Kingdom
Correspondence: Address reprint requests to Lynne M. Coluccio, PhD, Boston Biomedical Research Institute, 64 Grove St., Watertown, MA 02472. Tel.: 617-658-7784; Fax: 617-972-1761; E-mail: coluccio{at}bbri.org.
| ABSTRACT |
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| INTRODUCTION |
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Localization studies in tissue culture cells place Myo1b at the plasma membrane and in punctae within the cell body (Ruppert et al., 1995
). It is associated with several different purified rat liver membrane fractions including plasma membrane and microsomes (Ruppert et al., 1995
; Balish et al., 1999
; Raposo et al., 1999
); moreover, some Myo1b is presumably associated with the cytoskeleton (Balish et al., 1999
).
Myo1b supports the translocation of actin filaments in vitro; movement is regulated by the calcium ion concentration (Williams and Coluccio, 1994
). The slow kinetics exhibited by Myo1b suggest that Myo1b has evolved to participate in cytoskeletal rearrangements or maintenance of cortical tension (Coluccio and Geeves, 1999
; Geeves et al., 2000
). A role for Myo1b in the endocytic pathway has been proposed (Raposo et al., 1999
).
Purified Myo1b from rat liver contains one heavy chain of
130 kDa and multiple calmodulin light chains of 17 kDa (Coluccio, 1994
). For this study analytical ultracentrifugation and electron microscopy (EM) were used to provide data about the oligomeric state and morphology of Myo1b. The centrifugation studies show that Myo1b is an elongated monomer. Electron micrographs are consistent with this and show what are probably the motor domain and lever arm regions of the molecule. The studies predict that Myo1b from rat liver is predominantly the five IQ variant. We also show here that Myo1b binds to and cross-links actin filaments. The degree of actin cross-linking exhibited by Myo1b depends on the molar ratio of Myo1b/actin. The studies provide important structural information on Myo1b and predict that Myo1b bundles actin filaments by means of a second actin-binding site.
| EXPERIMENTAL PROCEDURES |
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Analytical ultracentrifugation
Myo1b at protein concentrations ranging from 0.10.5 mg/ml in 10 mM Tris, pH 8.1, 100 mM KCl, 1 mM MgCl2, 1 mM EGTA, and 1 mM DTT was analyzed at 4°C in a Beckman Optima XL-I analytical ultracentrifuge. Data collection and analyses, including determination of diffusion coefficient and molecular weight from sedimentation velocity data, were performed as previously described using the software SEDANAL (Stafford, 1992
, 1994
; Stafford and Sherwood, 2004
) and SEDFIT (Schuck, 2000
). Velocity runs were carried out with interference optics at 0.15, 0.056, and 0.020 mg/ml and run at 50,000 RPM at 4°C. Sedimentation equilibrium runs were analyzed using the equilibrium fitting program NONSIM (Margossian and Stafford, 1982
; Brenner et al., 1990
) now incorporated into SEDANAL as a global fitter. Equilibrium runs were performed at three loading concentrations and run at 10,000, 14,000, and 20,000 rpm at 4°C. Loading concentrations were 0.14, 0.07, and 0.03 mg/ml. Attainment of equilibrium was determined using WinMatch. A wavelength of 230 nm was used. An extinction coefficient at 230 nm was calculated from the aromatic residue and peptide backbone contributions (n-
* transition) using values of 6400, 3689, and 80 a.u.-cm1-L-mol1 for tryptophan, tyrosine, and the peptide bond, respectively, in 0.1 M phosphate at pH 7.0 (cf. http://omlc.ogi.edu/spectra/PhotochemCAD/abs_html/) (Gratzer, 1967
; Du et al., 1998
). Values of the extinction coefficients of Myo1b, actin and calmodulin at 230 nm were calculated to be 2.10, 2.66, and 1.15 a.u.-cm1-mL-mg1, respectively. Global analysis of the nine data sets was carried out with SEDANAL with a conservation of mass constraint and fitting for the relative amounts of each component as global fitting parameters. Fitting was performed by minimizing the L-1 norm (i.e., the sum of the absolute values of the residuals). Error estimates of the fitted parameters were obtained by bootstrap analysis. The partial specific volume and hydration used in analyses of ultracentrifugation data were calculated from the mass averaged contributions of individual amino acids (Kuntz and Kauzmann, 1974
; Perkins, 1986
).
From the amino acid composition, a value of 0.734 cc/g was computed for the partial specific volume, and a value of 0.415 g H2O/g protein was computed for the hydration. The frictional ratio using the hydration correction, 0.862, was computed from:
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1 is the hydration in grams of water per gram of protein,
is the specific volume of pure water, and so is the sedimentation coefficient for the corresponding unhydrated sphere.
Molecular bead modeling
Myo1b structure was modeled with eight beads, one for the head domain (80 kDa), one for each of the five IQ domains with calmodulin bound (17.7 kDa each), and two for the tail domain (16.9 kDa each). The head and tail portions were bent away from the axis of the IQ domains as shown in Fig. 2. The sedimentation coefficient of the model was computed from the bead model using the program HYDRO (Garcia de la Torre et al., 1994
). Other models with different degrees of bending of the head and tail sections were considered, but the model shown in Fig. 2 was the best representation of most of the images seen by EM.
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Actin-binding assays
Myo1b and actin were incubated at various molar ratios for the times indicated in a total volume of 100 µl of 10 mM Tris, pH 8.0, 100 mM KCl, 1 mM MgCl2, 0.5 mM DTT, and 1 mM EGTA. Control samples included actin only and Myo1b only. After the incubation period, the samples were centrifuged in a TLA 100 rotor in a Beckman tabletop ultracentrifuge at 245,000 x g for 20 min or in a microfuge at low speed at 14,000 x g for 15 min to check for bundling (Glenney et al., 1981
). To check for reversibility of binding, in some cases ATP was added to 10 mM for 10 min before high-speed centrifugation.
Supernatants were separated from pellets resulting from both the high- and low-speed spins. The pellets were resuspended in 1 M Tris base, then SDS-PAGE sample buffer and boiled. The supernatants were precipitated in 10% trichloroacetic acid before resuspending in 1 M Tris base and preparing for SDS-PAGE by the addition of sample buffer and boiling. After analysis by gel electrophoresis (Laemmli, 1970
), the amount of Myo1b heavy chain, calmodulin, and/or actin in the supernatants and pellets was determined by densitometry using the program NIH Image 1.63.
| RESULTS |
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6.6 S (M = 199 kg/mol) and
7.4 S (M = 232 kg/mol). The preparation runs as a single band on SDS-polyacrylamide gel electrophoresis (see Fig. 4). The combination of these data predicts a Stokes radius of 7.1 nm for the five IQ variant.
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30.5 nm. The longest chord of the bead model with the head positioned at a 45° angle to the rest of the molecule is 26.8 nm. The predicted sedimentation coefficient for this bead model was 7.3 S in good agreement with the measured value of 7.0 S. Other models (not shown) in which the head and tail sections assumed other angles were also simulated. A model in which both the head and the tail domain were bent 90° with respect to the IQ domain predicted a sedimentation coefficient of 7.8 S. Another model in which both the head and tail sections were straight with respect to the IQ domains gave a sedimentation coefficient of 7.2 S. Although this is not significantly different from the observed value or from the value for the straight model, the model in which the head and tail sections are bent 45° most closely represents both the EM and the sedimentation data, especially since the maximum chord length for the 45° model agreed with the value found by analysis of the EM pictures. The modeling was also consistent with the monomeric nature of Myo1b under the conditions of both the sedimentation experiments and EM.
Electron microscopy
Electron microscopic images of negatively stained Myo1b preparations showed mostly tadpole-shaped objects whose shapes and size were consistent with monomeric Myo1b molecules. The molecules, shown in a montage in Fig. 3, have a bulbous region
8-nm long at one end which we interpret to be the motor domain. The remainder of the molecule is
20-nm long which is consistent with a lever arm consisting of five calmodulins. The motor domain was found at varying orientations with respect to the lever. Some of this apparent flexibility may result from passive bending of the molecule, for instance at a pliant region, similar to what has been identified in myosin II (Houdusse et al., 2000
); however, the most sharply bent molecules (e.g., Fig. 3, bottom left) may result from active movements fuelled by the ATP in the buffer. The average length of the molecules determined analytically was 27.9 ± 0.5 SE. This agrees very well with the longest chord length computed from the bead model with head and tail bent at 45° for which a value of 27.0 nm was obtained. The values for the straight and 90° bent models were 19.0 and 30.4 nm, respectively.
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50% more Myo1b appeared in the supernatants after ATP treatment indicating that association of Myo1b with actin is partially reversible (Fig. 6).
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60 µM free Ca2+. There were no obvious differences in the amount of Myo1b pelleting with actin or the appearance of the resulting actin structures as determined by EM (data not shown).
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| DISCUSSION |
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In EM images Myo1b is elongated in shape with one end wider than the other. This tadpole shape is consistent with other myosins, which contain a motor domain followed by a lever arm (neck) and tail regions. From comparisons with myosin II crystal structures, e.g., (Houdusse et al., 2000
), the motor domain is expected to be
8-nm long and each IQ motif and its calmodulin can be expected to lengthen the lever arm by
4 nm. The measured overall length of Myo1b of 28 nm is therefore similar to what is predicted for the motor domain and a lever arm with five calmodulins. The
300 amino acids C-terminal to the lever arm are not resolved as a separate region in the images, but are therefore likely to be folded compactly. The incidence of images showing both sharply bent and relatively straight molecules may result from large conformational changes brought about during steady-state ATP hydrolysis. These shape changes are thought to form the basis of the stepping mechanism along actin filaments.
The EM studies provide the first look at single Myo1b molecules. The average length of the Myo1b molecule as calculated from the electron micrographs is 28 nm ± 0.5 SE; n = 24. This is consistent with the length of the longest cord of a Myo1b molecule whose head is at a 45° angle to the remainder of the molecule (26.8 nm) using a bead model based on the analytical ultracentrifugation results. The bent model is consistent with the results from EM and the sedimentation analyses; whereas the straight model although not ruled out by a conservative analysis of the sedimentation data is not consistent with the majority of the structures seen by EM. Like other myosins, it is likely that Myo1b is flexible so we consider this model for the average conformation.
Actin filaments incubated with low ratios of Myo1b in EGTA were noticeably straighter, but the micrographs did not have sufficient contrast to allow unambiguous identification of the individual Myo1b molecules. Myo1b associates with actin filaments orthogonally (Arthur, Lin, Coluccio, and Milligan, manuscript in preparation) as has been observed with cryoelectron microscopy of actin filaments after incubation with BBMI (Jontes et al., 1998
). EM confirmed that Myo1b forms sedimentable structures. With increasing ratios of Myo1b/actin, the actin filaments form networks or bundles. Bundling of F-actin in vitro has previously been observed for Acanthamoeba myosin I (Fujisaki et al., 1985
), brush border myosin I (Coluccio and Bretscher, 1987
; Conzelman and Mooseker, 1987
), and the liver myosin I isoforms (Coluccio and Conaty, 1993
).
Actin cross-linking can be accounted for in one of two ways: through oligomerization of two molecules each with one actin-binding site or via a single molecule containing two (or more) actin-binding sites. The lower eukaryotic class I myosins bundle actin filaments through a second actin-binding site (Lynch et al., 1986
) in their extended tail region (termed TH2 and TH3; Hammer, 1991
); however, no such second actin-binding site is obvious from review of the Myo1b sequence making the mechanism of actin cross-linking by Myo1b unclear. Nevertheless, our studies suggest that a second actin-binding site exists on Myo1b to explain how monomeric Myo1b supports actin cross-linking. Additionally, a baculovirus-expressed truncated Myo1b fragment representing the motor domain and 1 IQ region does not cross-link actin filaments (Perreault-Micale et al., 2000
). Efforts to express soluble tail regions to use to determine if they contain an actin-binding site have so far failed.
Cross-linking of actin by Myo1b suggests a role for Myo1b in the maintenance of actin-actin interactions in the cytoskeletal-rich regions of cells. One possibility is that Myo1b is responsible for the generation of tension by cross-linking actin filaments. Dictyostelium amoebae overexpressing Myo1b are deficient in their ability to form actin-rich protrusions and to become polarized providing evidence for the amoeboid myosin I's involvement in generating tension (Novak and Titus, 1997
). Similar mechanisms might exist for myosin I in mammalian cells.
| ACKNOWLEDGEMENTS |
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Submitted on May 3, 2004; accepted for publication September 29, 2004.
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