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* Institute for Theoretical Biology, Humboldt Universität zu Berlin, Berlin, Germany;
Unité de Chronobiologie Théorique, Université Libre de Bruxelles, Brussels, Belgium; and
Laboratory of Chronobiology, Institute of Medical Immunology, Charité-Universitätsmedizin Berlin, Berlin, Germany
Correspondence: Address reprint requests to Hanspeter Herzel, Institute for Theoretical Biology, Invalidenstr. 43, 10115 Berlin, Germany. Tel.: 49-30-2093-9101; E-mail: h.herzel{at}biologie.hu-berlin.de.
| ABSTRACT |
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| INTRODUCTION |
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10,000 neurons, characterized by a small size and high density (3
A remarkable property of circadian rhythms in the SCN is that they are self-sustained in constant condition, i.e., in absence of any external time cue. The core molecular regulatory mechanism underlying these oscillations relies on a negative feedback loop (6
). Because free-running periods of isolated neurons are broadly distributed, the self-sustained oscillations indicate that a coupling mechanism is operating between the neurons. The coupling between cells in the SCN is achieved partly by neurotransmitters (3
,7
). In each SCN, two regions are usually distinguished according to the neuropeptides expressed by the cells in these areas. In the dorsomedial (DM) part, neurons mainly express the arginin-vasopressin polypeptides, whereas in the ventrolateral (VL) part, they produce vasointestinal polypeptide (VIP) and gastrin-releasing peptide (2
,8
). These three neuropeptides show circadian variation in the level of mRNA in constant condition (9
). Their release also undergoes circadian variation (10
). In both parts of the SCN, the neurotransmitter gamma-aminobutyric acid (GABA) is also released (3
). Although to our knowledge no experimental evidence mentions circadian variation of its concentration, the responsiveness of the SCN to GABA shows daily variation (11
).
Several evidences of involvement of neurotransmitters in the intercellular coupling, possibly through regulation of the firing rate, have been put forward (3
). Liu and Reppert (11
) showed that application of GABA to dissociated SCN cells induces phase-shifts in the firing rhythm of individual neurons and that daily GABA pulses synchronized the rhythm. Furthermore, the firing rate of the SCN neurons is altered by GABAA receptor antagonist (12
). Shen and co-workers (13
) showed that in transgenic mice overexpressing VPAC2-R, a receptor for VIP, both rhythmicity in constant condition and entrainment by light-dark cycles are affected: these mice exhibit shorter periods in constant darkness and are quickly resynchronized to an 8-h advanced light-dark cycle. Furthermore, VPAC2-R knockout mice are incapable of sustaining normal circadian rhythms of activity behavior and fail to exhibit circadian expression of the core clock genes per1, per2, and cry1 (14
). A circadian regulation of VPAC2-R was also shown to be required for a normal cell-to-cell communication (15
).
How neurotransmitters interfere with the clock core is not yet fully clear. However, it was shown that treatment of SCN slices with VIP produces phase shifts similar to those induced by light pulses (16
,17
). Recently, Nielsen and co-workers (18
) showed that VIP induces per1 and per2 expression in a phase-dependent manner.
In both regions of the SCN, circadian oscillations are sustained over a couple of days in vitro. Using SCN explants Yamaguchi and co-workers (19
) showed that the DM cells are not synchronized when this area is disconnected from the rest of the SCN. This observation suggests that ventrolateral (VL) cells drive the oscillations and that the internal coupling between DM cells is negligible. The average phase of the oscillations in individual neurons is advanced in the DM part with respect to the VL part, indicating that the DM region is the phase-leading part (19
). However, only VL cells are light-responsive. In these cells, light interacts with the clock by activating the transcription of per1 and per2 genes.
Treatment with tetrodotoxin (TTX), an inhibitor of Na+ channels, has been shown to alter the overt circadian rhythms as well as the input pathway, but without preventing the individual cells from oscillating (20
). Experiments of Yamaguchi (19
) suggest that TTX treatment desynchronizes the cells. Upon TTX elimination, cells rapidly synchronize again. Interestingly, the phase of the oscillations after the treatment is the same as before the treatment, indicating that the phase relationship in the coupled system is not established randomly but is intrinsic to the properties of the oscillator network (19
).
Here, we present a mathematical model to describe the behavior of a population of coupled SCN neurons. The single cell oscillator is described by a three-variable model similar to the widely used Goodwin model. This model, based on a negative feedback loop, accounts for the core molecular mechanism leading to self-sustained oscillations of clock genes. Based on the above-mentioned results, we assume that the coupling is achieved by neurotransmitters released by each cell and that spatial transmission is fast with respect to the timescale of the oscillations (24 h). Under these conditions, it is a reasonable hypothesis to consider global coupling, achieved through a mean field, defined as the average concentration of the neurotransmitter. The goal of the present article is to show how a simple molecular model can account for the main properties resulting from the coupling of a population of circadian oscillators and provide an experimentally testable mechanism responsible for their synchronization.
We show that a global coupling relying on a mean field is efficient to synchronize a population of 10,000 cells. We then consider a reduced system consisting of two coupled oscillators. Using bifurcation analysis, we determine conditions to achieve synchronization. In particular, we show that the coupling induces a damping in individual clocks, enabling efficient synchronization. This allows the cells to display fast synchronization after transient disruption of the coupling. Next, we simulate the effect of a light-dark (LD) cycle by applying an external forcing and show that coupled oscillators can be entrained by the LD cycle. Finally, we study the interaction between two cell populations, reflecting the two parts of the SCN, and provide an explanation for the counterintuitive observation that the driven region is phase-leading.
| MODEL |
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Two factors influence the dynamics of single cell oscillations: light and intercellular coupling. Both are assumed to act independently from the negative feedback loop and are added as independent terms in the transcription rate of X. Light is incorporated through the time-dependent term L(t). In absence of light, we have L = 0. The global coupling depends on the concentration of the synchronizing factor (the neurotransmitter) in the extracellular medium. Under the fast transmission hypothesis, the extracellular concentration is assumed to equilibrate to the average cellular neurotransmitter concentration. This global variable is referred to as the mean field, denoted by F. The evolution equations for N oscillators (denoted by i = 1,2,..., N) are then written as
![]() | (1) |
![]() | (2) |
![]() | (3) |
![]() | (4) |
The release of the neurotransmitter is supposed to be fast with respect to the 24-h timescale of the oscillations and becomes homogeneous to establish an average neurotransmitter level, or a mean field F,
![]() | (5) |
Parameters of the model have been chosen in such a way that the single cell oscillator produces self-sustained oscillations with a circadian period. Their values are given in the caption of Fig. 1.
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![]() | (6) |
...
denotes the average over time. This parameter measures the distribution of phases of the oscillators and is ranging between 0 (no synchronization) and 1 (perfect synchronization, with all oscillators in phase). | RESULTS |
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Individual cells act as damped oscillators
Understanding the dynamics of coupled nonlinear oscillators is not straightforward. Therefore, it is useful to study a reduced system, comprising only two coupled circadian oscillators. We consider here two oscillators having slightly different periods23.5 and 24.7 h, respectively. For appropriate parameter values, the two oscillators can be synchronized with a relatively small phase-difference (Fig. 2, A and B). The faster one is phase-advanced by 3.1 h with respect to the slower one. Again, we observed that the resulting period, which is
30 h, is increased with respect to individual periods.
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A better understanding of the role of the coupling term on the dynamics of a single cell oscillator can be acquired by examining the effect of a constant mean field on the behavior of a single cell oscillator (Fig. 3). The most striking result is that the constant mean field brings the oscillator out of its oscillatory domain. In the case of synchronized cells (Fig. 1), the mean field F oscillates around an average value of 0.05. Fig. 3 C shows that such a level leads to damped oscillations of individual cells. The period of these damped oscillations, estimated from linear approximation analysis around the steady state of the system, is
27 h (Fig. 3 D). However, in the fully coupled system, the mean field is oscillating, and synchronization, instead of damping, is achieved.
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Determination of the optimal coupling strength
We have shown for the case of two coupled circadian oscillators that the choice of the coupling strength K is important to obtain synchrony (Fig. 2, C and D). Considering a population of 1000 circadian oscillators, we studied the effect of K on the synchronization, quantified by the order parameter R (Eq. 6) and on the resulting period (Fig. 4). Better synchronization is achieved when the coupling strength is increased (Fig. 4 A) and this is accompanied by lengthening of the resulting period (Fig. 4 B). For a circadian system, an optimal coupling is reached when the coupling strength K is able to synchronize the oscillators, while keeping the period around a circadian value.
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Phase relationship conservation after transient desynchronization
Yamaguchi and co-workers (19
) showed that after transient TTX treatment, which disrupts the coupling among the cells by selectively and reversibly blocking the Na+ channels, SCN cells are rapidly resynchronized, displaying the same phase relationship as before the treatment, independently of the duration of the treatment. This implies that the phase relationship between the oscillators is an intrinsic property of the oscillator network and is not established randomly or by the initial condition of the system.
We simulated this experiment by setting K = 0 during 200 h (Fig. 5). During this time, each oscillator evolves toward its own limit cycle and rapidly runs out of phase due to variability in periods. The mean field rapidly dampens out. As soon as K recovers its initial value (K = 0.5), the oscillators are rapidly resynchronized with the same phase relationship, as observed experimentally.
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The clock is entrained by a light-dark cycle
In the natural environment, circadian clocks are subjected to alternance of light and darkness. This external cycle entrains the oscillations precisely to a 24-h period. We simulate the effect of a light-dark cycle by using a square-wave function for the light term, L (see Eq. 1). The term L switches from L = 0 in dark phase to L = 0.01 in light phase. Such a forcing entrains the circadian oscillators to a 24-h period (Fig. 7). Although the system displays a quasiperiodic behavior, the period and the phase of the oscillations are very well conserved. The mean field always reaches its maximum at the end of the light phase. Only the amplitude undergoes very small variations from one cycle to another. This explains why the order parameter is not higher than in the case of constant conditions: R = 0.53.
The periodic forcing also decreases the phase spreading of the oscillators: the phase difference between the oscillators and the mean field is reduced with respect to the case of absence of light-dark forcing (compare curves DD and LD in Fig. 6). In particular, oscillators with a larger period are entrained with a very small phase delay with respect to the mean field, whereas oscillators with a small period display phase advances.
A driven fast-running population is phase-leading
The SCN is conceptually subdivided into two parts, the dorsomedial (DM) and the ventrolateral (VL) part, where different neurotransmitters are released. Results from Yamaguchi (19
) raise the possibility that the global oscillatory output from DM part is damped because of a lack of synchrony between the cells when this area is isolated from the VL part, and that the synchrony is achieved through coupling to the VL part. On the other hand, because DM part is phase-advanced with respect to VL, they conclude that the DM part is the driving force.
To account for these specificities we study the interaction between two cell populations (Fig. 8). Each population is composed of 5000 cells. Based on Yamaguchi's results (19
), we assume that the coupling is effective only in the first population (VL). Cells in the second population (DM) are not mutually coupled but entrained by the mean field resulting from the first population. Oscillations are self-sustained in both populations, but display a slight phase difference: the DM cells are phase-advanced
1 h with respect to the VL cells (Fig. 8 A). A necessary condition for obtaining a phase difference between the two populations is to have the average periods of the two populations slightly differ. In the case illustrated in Fig. 8 A, the mean periods of the two populations are 23.5 and 20 h. This prediction could have been already anticipated from Fig. 6, where it was shown that faster oscillators are phase-advanced with respect to the mean field.
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| DISCUSSION |
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Different approaches have been used to couple a population of circadian oscillators, from Winfree's phase oscillators (34
,35
) to phase-resetting oscillators (36
). Closer to our work is the molecular model of Drosophila circadian clock by Ueda and co-workers (37
). In this article, the authors studied a model for circadian rhythms in Drosophila. As a single cell oscillator, they used a more detailed model incorporating 10 variables. They then apply a local coupling through each possible variable, and show that for some of them, synchronization occurs. Interestingly, they assessed the effect of fluctuations in parameter values and show that the coupled system is relatively robust to noise. Another theoretical model of coupled circadian oscillators through local coupling has been proposed by Kunz and Achermann (38
). Using the van der Pol model, they described possible spatial effects, including wave propagation and pattern formation.
In this article, we present a molecular model that accounts for the main properties resulting from the coupling of a population of circadian oscillators. In the SCN of mammals, among different possible coupling mechanisms, neurotransmitters have been suggested to play a crucial role. By assuming fast diffusion, we use the global neurotransmitter level to couple circadian oscillators.
Global coupling through such a mean field is efficient to synchronize a population of coupled circadian oscillators (Fig. 1), and better synchrony can be obtained by increasing the strength of the coupling. High synchrony is typically accompanied by a period lengthening. Therefore an optimal coupling strength for circadian rhythms is found when it is small enough to keep the period circadian and large enough to achieve synchronization (Fig. 4). A similar change in the period has been observed when we coupled other circadian oscillators through similar mechanisms (not shown), and also by other authors using a different approach for the global coupling (27
). This property has been reported in experimental studies. Mice kept in a constant light condition exhibit a lengthening in their period of activity (28
,39
). In peripheral fibroblast cultures, increasing the serum concentration has been shown to decrease the period of the oscillations (29
). Whether there are mechanisms to compensate period changes due to coupling in vivo is still an open question. Compensation is possible if the coupling acts not only on the transcription rate of the clock genes but also on other processes like protein degradation.
Bifurcation analysis of the single cell oscillator revealed that the coupling actually brings individual oscillators into a damped oscillatory domain (Fig. 3). In other words, if the mean field is kept constant, the oscillations dampen out to a steady state. Thus, in the coupled system, individual oscillators would be damped; however, the coupling through the mean field drives them into an oscillatory state. Period estimation from linear analysis of a single oscillator (Fig. 3 D) shows a good agreement with the period of coupled oscillators (Fig. 1 C), indicating that the observed period-lengthening is likely to be due to the intrinsic properties of the core oscillator rather than being a result of the type of coupling considered in this article.
The crucial role of damping to get the fast synchronization is shown as follows:
In summary, we predict that the oscillations are damped by the constant component mean field and, consequently, that they are driven by the oscillatory component of the neurotransmitter concentration. These predictions could be tested experimentally by applying a constant concentration of a candidate coupling factor to isolated SCN cells. For a concentration level corresponding to the average level seen in the coupled system, circadian oscillations should dampen.
The phases of oscillators in the coupled system depend only on their individual periods (Fig. 6). After any transient perturbation, the initial phase is recovered. In particular, oscillators with shorter periods are, in the coupled system, phase-advanced with respect to the mean field, whereas oscillators with longer period are phase-delayed. This prediction can be verified by analyzing time-series of experiments such as those carried out by Yamaguchi (19
). Our prediction is that the robust phase relations are governed by the individual periods of the cells (Fig. 6). This explains why cells recover their initial phase relationship after transient disruption of the coupling (Fig. 5). Moreover, resynchronization is fast and efficient because cells are acting like damped oscillators. This is in line with the experimental observation that Per1 and Per2 mutant mice synchronize rapidly to a light-dark cycle (40
).
We simulated the effect of a light-dark cycle by square (Fig. 7) and sine (not shown) waves of the light-controlled parameter. In both cases such light-dark cycles entrain the oscillations. Despite the quasiperiodic nature of the behavior illustrated in Fig. 7, the phase and the period of the oscillations are highly precise.
To account for the two regions in the SCN, we studied the interaction between two populations of circadian oscillators (Fig. 8). We showed that a population composed of uncoupled cells can be synchronized by the mean field of the first population. Moreover, the phase-advance observed in the DM part with respect to the VL part can easily be explained if there is a slight difference in the mean periods of individual neurons in each part. To be phase-advanced, DM cells must oscillate with a slightly shorter average period than VL cells. This prediction from the model was confirmed recently (41
).
In conclusion, we have introduced a molecular model for the regulatory network underlying the circadian oscillations in the SCN. Our findings proved that a mean field approach can be an effective way to couple a population of circadian oscillators and allows us to clarify the requirement for such an efficient synchronization: the global coupling drives oscillators, which would be damped under a constant forcing. A good synchrony is, however, always accompanied by a slight change of the resulting period. Compensation mechanisms will be the subject of future investigations. Several extensions can be considered. Our approach can be generalized to more detailed models, including ones with interlocked feedback loops, such as those recently published by Leloup and Goldbeter (42
), Becker-Weimann and co-workers (43
), or by Smolen and co-workers (23
). Furthermore, a local coupling approach will be used to study the spatiotemporal cellular organization in the SCN. Further characterization of the SCN dynamics will benefit from the understanding of global coupling, which has already led to some confirmed predictions.
Note added in proof: More recently, Aton et al. (44
) showed that the loss of vip in vip-/- mutants disrupted synchrony between rhythmic neurons and that a daily application of VPAC2 agonist restored synchrony
| ACKNOWLEDGEMENTS |
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This work was supported by the Deutsche Forschungsgemeinschaft (grant SFB 618) and the European Union (Network Biosimulation, contract No. 005137).
Submitted on December 21, 2004; accepted for publication April 12, 2005.
| REFERENCES |
|---|
|
|
|---|
2. Moore, R. Y., J. C. Speh, and R. K. Leak. 2002. Suprachiasmatic nucleus organization. Cell Tissue Res. 309:8998.[CrossRef][Medline]
3. Shirakawa, T., S. Honma, Y. Katsuno, H. Oguchi, and K. I. Honma. 2001. Multiple oscillators in the suprachiasmatic nucleus. Chronobiol. Int. 18:371387.[CrossRef][Medline]
4. Welsh, D. K., D. E. Logothetis, M. Meister, and S. M. Reppert. 1995. Individual neurons dissociated from rat suprachiasmatic nucleus express independently phased circadian firing rhythms. Neuron. 14:697706.[CrossRef][Medline]
5. Honma, S., W. Nakamura, T. Shirakawa, and K. Honma. 2004. Diversity in the circadian periods of single neurons of the rat suprachiasmatic nucleus depends on nuclear structure and intrinsic period. Neurosci. Lett. 358:173176.[CrossRef][Medline]
6. Reppert, S. M., and D. R. Weaver. 2001. Molecular analysis of mammalian circadian rhythms. Annu. Rev. Physiol. 63:647676.[CrossRef][Medline]
7. Hastings, M. H., and E. D. Herzog. 2004. Clock genes, oscillators, and cellular networks in the suprachiasmatic nuclei. J. Biol. Rhythms. 19:400413.[Abstract]
8. Kalamatianos, T., I. Kallo, H. D. Piggins, and C. W. Coen. 2004. Expression of VIP and/or PACAP receptor mRNA in peptide synthesizing cells within the suprachiasmatic nucleus of the rat and in its efferent target sites. J. Comp. Neurol. 475:1935.[CrossRef][Medline]
9. Dardente, H., J. S. Menet, E. Challet, B. B. Tournier, P. Pevet, and M. Masson-Pevet. 2004. Daily and circadian expression of neuropeptides in the suprachiasmatic nuclei of nocturnal and diurnal rodents. Brain Res. Mol. Brain Res. 124:143151.[Medline]
10. Shinohara, K., T. Funabashi, D. Mitushima, and F. Kimura. 2000. Effects of gap junction blocker on vasopressin and vasoactive intestinal polypeptide rhythms in the rat suprachiasmatic nucleus in vitro. Neurosci. Res. 38:4347.[CrossRef][Medline]
11. Liu, C., and S. M. Reppert. 2000. GABA synchronizes clock cells within the suprachiasmatic circadian clock. Neuron. 25:123128.[CrossRef][Medline]
12. Shirakawa, T., S. Honma, Y. Katsuno, H. Oguchi, and K. I. Honma. 2000. Synchronization of circadian firing rhythms in cultured rat suprachiasmatic neurons. Eur. J. Neurosci. 12:28332838.[CrossRef][Medline]
13. Shen, S., C. Spratt, W. J. Sheward, I. Kallo, K. West, C. F. Morrison, C. W. Coen, H. M. Marston, and A. J. Harmar. 2000. Overexpression of the human VPAC2 receptor in the suprachiasmatic nucleus alters the circadian phenotype of mice. Proc. Natl. Acad. Sci. USA. 97:1157511580.
14. Harmar, A. J., H. M. Marston, S. Shen, C. Spratt, K. M. West, W. J. Sheward, C. Morrison, J. R. Dorin, H. Piggins, J. C. Reubi, J. S. Kelly, E. S. Maywood, et al. 2002. The VPAC(2) receptor is essential for circadian function in the mouse suprachiasmatic nuclei. Cell. 109:497508.[CrossRef][Medline]
15. Cutler, D. J., M. Haraura, H. E. Reed, S. Shen, W. J. Sheward, C. F. Morrison, H. M. Marston, A. J. Harmar, and H. D. Piggins. 2003. The mouse VPAC2 receptor confers suprachiasmatic nuclei cellular rhythmicity and responsiveness to vasoactive intestinal polypeptide in vitro. Eur. J. Neurosci. 17:197204.[CrossRef][Medline]
16. Romijn, H. J., A. A. Sluiter, C. W. Pool, J. Wortel, and R. M. Buijs. 1996. Differences in co-localization between Fos and PHI, GRP, VIP and VP in neurons of the rat suprachiasmatic nucleus after a light stimulus during the phase delay versus the phase advance period of the night. J. Comp. Neurol. 372:18.[CrossRef][Medline]
17. Reed, H. E., A. Meyer-Spasche, D. J. Cutler, C. W. Coen, and H. D. Piggins. 2001. Vasoactive intestinal polypeptide (VIP) phase-shifts the rat suprachiasmatic nucleus clock in vitro. Eur. J. Neurosci. 13:839843.[CrossRef][Medline]
18. Nielsen, H. S., J. Hannibal, and J. Fahrenkrug. 2002. Vasoactive intestinal polypeptide induces per1 and per2 gene expression in the rat suprachiasmatic nucleus late at night. Eur. J. Neurosci. 15:570574.[CrossRef][Medline]
19. Yamaguchi, S., H. Isejima, T. Matsuo, R. Okura, K. Yagita, M. Kobayashi, and H. Okamura. 2003. Synchronization of cellular clocks in the suprachiasmatic nucleus. Science. 302:14081412.
20. Schwartz, W., R. A. Gross, and M. T. Morton. 1987. The suprachiasmatic nuclei contain a tetrodotoxin-resistant circadian pacemaker. Proc. Natl. Acad. Sci. USA. 84:16941698.
21. Goodwin, B. C. 1965. Oscillatory behavior in enzymatic control processes. Adv. Enzyme Regul. 3:425438.[CrossRef][Medline]
22. Griffith, J. S. 1968. Mathematics of cellular control processes. I. Negative feedback to one gene. J. Theor. Biol. 20:202208.[Medline]
23. Smolen, P., P. E. Hardin, B. S. Lo, D. A. Baxter, and J. H. Byrne. 2004. Simulation of Drosophila circadian oscillations, mutations, and light responses by a model with VRI, PDP-1, and CLK. Biophys. J. 86:27862802.
24. Leloup, J. C., D. Gonze, and A. Goldbeter. 1999. Limit cycle models for circadian rhythms based on transcriptional regulation in Drosophila and Neurospora. J. Biol. Rhythms. 14:433448.[Abstract]
25. Ruoff, P., and L. Rensing. 1996. The temperature-compensated Goodwin model simulates many circadian clock properties. J. Theor. Biol. 179:275285.[CrossRef]
26. Ruoff, P., M. Vinsjevik, C. Monnerjahn, and L. Rensing. 2001. The Goodwin model: simulating the effect of light pulses on the circadian sporulation rhythm of Neurospora crassa. J. Theor. Biol. 209:2942.[CrossRef][Medline]
27. Garcia-Ojalvo, J., M. B. Elowitz, and S. H. Strogatz. 2004. Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing. Proc. Natl. Acad. Sci. USA. 101:1095510960.
28. Ohta, H., S. Yamazaki, and D. G. McMahon. 2005. Constant light desynchronizes mammalian clock neurons. Nat. Neurosci. 8:267269.[CrossRef][Medline]
29. Nagoshi, E., C. Saini, C. Bauer, T. Laroche, F. Naef, and U. Schibler. 2004. Circadian gene expression in individual fibroblasts; cell-autonomous and self-sustained oscillators pass time to daughter cells. Cell. 119:693705.[Medline]
30. Aronson, D. G., G. B. Ermentrout, and N. Kopell. 1990. Amplitude response of coupled oscillators. Physica D. 41:403449.[CrossRef]
31. Bergé, P., Y. Pomeau, and C. Vidal. 1986. Order within Chaos: Towards a Deterministic Approach to Turbulence. Wiley, New York.
32. Grebogi, C., E. Ott, and J. A. Yorke. 1987. Chaos, strange attractors, and fractal basin boundaries in nonlinear dynamics. Science. 238:632638.
33. Glass, L., and M. C. Mackey. 1988. From Clock to Chaos. Princeton University Press, Princeton, NJ.
34. Winfree, A. T. 1967. Biological rhythms and the behavior of populations of coupled oscillators. J. Theor. Biol. 16:1542.[CrossRef][Medline]
35. Winfree, A. T. 2002. Oscillating systems. on emerging coherence. Science. 298:23362337.
36. Antle, M. C., D. K. Foley, N. C. Foley, and R. Silver. 2003. Gates and oscillators: a network model of the brain clock. J. Biol. Rhythms. 18:339350.[Abstract]
37. Ueda, H. R., K. Hirose, and M. Iino. 2002. Intercellular coupling mechanism for synchronized and noise-resistant circadian oscillators. J. Theor. Biol. 216:501512.[CrossRef][Medline]
38. Kunz, H., and P. Achermann. 2003. Simulation of circadian rhythm generation in the suprachiasmatic nucleus with locally coupled self-sustained oscillators. J. Theor. Biol. 224:6378.[CrossRef][Medline]
39. Daan, S., and C. S. Pittendrigh. 1976. A functional analysis of circadian pacemakers in nocturnal rodents. III. Heavy water and constant light: homeostasis of frequency? J. Comp. Physiol. [A]. 106:267290.[CrossRef]
40. Steinlechner, S., B. Jacobmeier, F. Scherbarth, H. Dernbach, F. Kruse, and U. Albrecht. 2002. Robust circadian rhythmicity of Per1 and Per2 mutant mice in constant light, and dynamics of Per1 and Per2 gene expression under long and short photoperiods. J. Biol. Rhythms. 17:202209.[Abstract]
41. Noguchi, T., K. Watanabe, A. Ogura, and S. Yamaoka. 2004. The clock in the dorsal suprachiasmatic nucleus runs faster than that in the ventral. Eur. J. Neurosci. 20:31993199.[CrossRef][Medline]
42. Leloup, J. C., and A. Goldbeter. 2003. Toward a detailed computational model for the mammalian circadian clock. Proc. Natl. Acad. Sci. USA. 100:70517056.
43. Becker-Weimann, S., J. Wolf, H. Herzel, and A. Kramer. 2004. Modeling feedback loops of the mammalian circadian oscillator. Biophys. J. 87:30233034.
44. Aton, S. J., C. S. Colwell, A. J. Harmar, J. Waschek, and E. D. Herzog. 2005. Vasoactive intestinal polypeptide mediates circadian rhythmicity and synchrony in mammalian clock neurons. Nat. Neurosci. 8:476483.[Medline]
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