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Departments of * Neurobiology,
NanoBiophotonics, and
Molecular Biology, Max-Planck-Institute for Biophysical Chemistry, 37077 Göttingen, Germany
Correspondence: Address reprint requests to Thorsten Lang, Dept. of Neurobiology, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany. Tel.: 49-551-201-1795; Fax: 49-551-201-1639; E-mail: tlang{at}gwdg.de. Subjects regarding STED-microscopy should be addressed to Stefan Hell, E-mail: shell{at}gwdg.de.
| ABSTRACT |
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| INTRODUCTION |
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Investigating the plasmalemmal distribution of the SNAREs (soluble N-ethylmaleimide-sensitive factor attachment protein receptors) syntaxin 1A and syntaxin 4 we found evidence for such a model. SNAREs are a superfamily of small, mostly membrane-bound proteins sharing a homologous sequence of 6070 amino acids, the SNARE motif (5
). In the case of syntaxins 14, this motif is anchored to the plasma membrane by a C-terminal transmembrane region (TMR) and attached to a large N-terminal domain via a linker region.
Specific sets of SNAREs drive intracellular membrane fusion steps (6
,7
). In exocytosis, membranes merge during complex formation between SNAREs associated with the plasma membrane and the corresponding vesicle. For instance regulated vesicle fusion is mediated by the plasma membrane associated SNAREs syntaxin 1A and SNAP-25 and the vesicle associated SNARE synaptobrevin 2, whereas in constitutive exocytosis syntaxin 4 and SNAP-23 (both plasma membrane associated) and cellubrevin (vesicle associated) are involved. In recent years, the organization of plasmalemmal SNAREs has been the subject of several studies. Microscopic analysis of membrane lawns (8
10
) and cells (11
13
) documented that they are concentrated in microdomain like structures, often called clusters. Moreover, syntaxin 1 and syntaxin 4 clusters have been shown to define docking and fusion sites for secretory vesicles and caveolae, respectively (9
,10
,12
). In microscopic studies, varying degrees of SNARE distribution changes have been observed after cholesterol depletion, ranging from moderate (9
,10
) to complete disintegration of SNARE domains (8
,9
), indicating an important role of lipids for SNARE domain integrity. Biochemical experiments based on DRMs isolation documented that cholesterol depletion disturbs SNARE microdomains (14
) and led to the suggestion that SNAREs are enriched in membrane rafts (15
). However, some SNAREs do not cofloat with raft markers when stringent solubilization conditions are applied (9
,16
). Nonetheless, it has been established beyond question that the integrity of SNARE domains depends on cholesterol.
Here we report that lipids alone are not sufficient for correct syntaxin clustering but that additional protein-protein interactions are also required. We found that syntaxin clustering in the native membrane is mediated by specific homooligomerization involving the SNARE motif. Hence, by means of syntaxin clustering, cells are able not only to define but also to spatially separate sites with different functions.
| MATERIALS AND METHODS |
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48 h posttransfection. BHK cells were grown in medium containing 1% fetal calf serum and used
24 h posttransfection.
Antibodies
Monoclonal antibodies were used for the detection of syntaxin 1 (HPC-1) (18
) and the myc tag (CRL-1729 ATCC). For detection of syntaxin 4 an affinity purified rabbit polyclonal antibody was applied (9
). As secondary antibodies we used Cy3-coupled goat-anti-mouse and Cy5-coupled goat-anti-rabbit (both from Dianova, Hamburg, Germany). For STED experiments, sheep-anti-mouse immunoglobulins G (catalogue No. 515-005-003, Dianova) were labeled with Atto532 (provided by K. H. Drexhage, Dept. of Chemistry, University of Siegen, Germany).
Plasmids
Plasmids for transient overexpression were produced by standard molecular biological methods. The encoded fusion proteins were epitope tagged with a N-terminal c-myc (MEQKLISEEDLNS), and/or the C-terminus was linked by 12 amino acids (LVPRARDPPVAT) to a variant of enhanced green fluorescent protein (EGFP). The single amino acid substitution A206K, previously shown to prevent dimerization of fluorescent proteins (19
), was introduced, resulting in monomeric EGFP (mGFP). pBob5.1 (20
) was used as the vector backbone for all constructs encoding c-myc tagged proteins. The plasmids carrying the coding sequences of fusion proteins without N-terminal tag are based on the vector pEGFP-N1 (Clontech, Mountain View, CA) (GenBank accession No. U55762). Using the rat sequence of syntaxin 1A and the corrected rat sequence for syntaxin 4 (as described (21
)) as references, the coding sequences have been verified by sequencing for all constructs. The constructs used for transient overexpressions coded for the following tagged proteins: Sx1A-green fluorescent protein (GFP) [Sx1A-(1-288) + mGFP]; Sx1A, SNARE motif-TMR-GFP [Sx1A-(128 + 183288) + mGFP]; Sx1A, TMR-GFP [Sx1A-(128 + 259288) + mGFP]; Sx1AmutTMR-GFP [Sx1A-(1288 carrying the mutations M267A, C271A, and I279A) + mGFP]; Sx4-GFP [Sx4-(1298) + mGFP]; Sx4, SNARE motif-TMR-GFP [Sx4-(137 + 191298) + mGFP]; Sx4, TMR-GFP [Sx4-(137 + 267298) + mGFP]; myc-Sx1A [myc-tag + Sx1A-(2288)]; myc-Sx1Aopen [myc-tag + Sx1A-(2288 carrying the mutations L165A and E166A)]; myc-Sx4 [myc-tag + Sx4-(2298)]; myc-Sx1A-GFP [myc-tag + Sx1A-(2288) + mGFP].
Immunofluorescence
Membrane sheets were prepared as previously described (22
), except that for onstage sonication a different sonifier was used (Sonifier B12, Branson Ultrasonics, Danbury, CT). In brief, cells were grown on poly-L-lysine-coated coverslips and disrupted by a 100 ms ultrasound treatment in ice cold sonication buffer (20 mM Hepes, pH 7.2, 120 mM potassium glutamate, 20 mM potassium acetate, and 10 mM EGTA). Freshly prepared membrane sheets were fixed for 90120 min at room temperature in 4% paraformaldehyde in phosphate-buffered saline (PBS) (137 mM NaCl, 2.7 mM KCl, and 8.1 mM Na2HPO4, pH 7.3) and immunostained using standard protocols, essentially as described (9
). For Fig. 1, EF, and syntaxin 4 stainings, several steps were performed with high salt PBS (the NaCl concentration was elevated to 500 mM) containing 3% bovine serum albumin. STED microscopy was carried out on HPC-1/sheep-anti-mouse-Atto532 stained coverslips mounted in Mowiol (6 g Glycerol AR (No. 4094, Merck, Darmstadt, Germany), 2.4 g Mowiol 4-88 (Hoechst, Franfort, Germany), 6 ml water, 12 ml 200 mM Tris, pH 7.2 buffer).
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Fluorescence microscopy
Membrane sheets were analyzed using a Zeiss Axiovert 100 TV fluorescence microscope with a 100x 1.4 numerical aperture plan apochromat oil objective (Zeiss, Göttingen, Germnay). Illumination was provided by a XBO 75 xenon lamp. For imaging, we used a back-illuminated frame transfer charge-coupled device camera (Princeton Instruments, Princeton, NJ) with a magnifying lens (2.5x Optovar, Zeiss) to avoid spatial undersampling by large pixels. The focal position was controlled using a low voltage piezo translator device and a linear variable transformer displacement sensor/controller (Physik Instrumente, Waldbronn, Germany). Appropriate filter sets were applied for fluorescence excitation and detection. For the images shown in Fig. 1 and for the coclustering experiments the following channels were recorded: TMA-DPH (excitation bandpass (BP) 360/3050, beamsplitter (BS) 395420, and emission longpass (LP) 420 or BP 460/50), GFP (excitation BP 480/40, BS LP 505, and emission BP 527/30), Cy3 (excitation BP 565/30, BS LP 595, and emission BP 645/75). For double immunolabeling experiments, the following filter sets were used for TMA-DPH (excitation BP 350/50, BS 395, and emission LP 420), Cy3 (excitation BP 525/30, BS LP 550, and emission BP 575/30) and Cy5 (excitation BP 620/60, BS LP 660, and emission BP 700/75). Images were acquired with Metamorph 5.1 (Universal Imaging, West Chester, PA).
STED microscopy
Stimulated emission depletion (STED) microscopy (23
25
) was carried out with a home-built setup in which fluorescence excitation was performed with a pulsed laser diode emitting 100 ps pulses at 470 nm (Picoquant, Berlin, Germany). STED was performed using an optical parametric oscillator (OPO) by the company APE (Berlin, Germany) that was pumped by a mode-locked Ti:Sapphire laser (MaiTai, Spectra Physics, Mountain View, CA) operating at 80 MHz. The excitation diode was triggered by the OPO pulses. STED on the dye Atto532 was accomplished at a central wavelength of 615 nm. The initial duration of the STED pulses of 200 fs was stretched to 200 ps to reduce photobleaching (26
). The conversion of the STED beam into a doughnut mode was accomplished by means of a spatial light modulator (Hamamatsu, Hamamatsu City, Japan) delivering a (02
) helical phase ramp. The excitation and the STED beams were coupled onto an oil immersion lens (HCX PL APO, 100x, Leica Microsystems, Mannheim, Germany) with 1.4 numerical aperture, by means of dichroic mirrors. The average power of the excitation and the STED beams at the sample was 1.9 µW and 18 mW, respectively. The fluorescence was collected by the same lens and directed onto a counting avalanche photodiode. The photodiode featured an opening diameter of 71% of the backprojected Airy disk at the detector plane. The image was obtained by scanning the sample with a piezo stage featuring a positioning accuracy <10 nm.
The point spread function was experimentally determined by measuring the size of fluorescent point sources. For this purpose glass-adsorbed primary antibodies stained by Atto532-labeled secondary antibodies mounted in Mowiol were imaged. Intensity profiles of 426 single spots were fitted by a Lorentz function resulting in an average full width at half-maximum (FWHM) of 72 nm. For comparison, we also determined the FWHM in the confocal mode. Due to the lower resolution, not all spots analyzed in the STED mode were separated in the confocal image. Therefore only 50 spots were fitted by a Gaussian function, resulting in an average FWHM of 192 nm.
Analyzing syntaxin 1 cluster density and expression level
To determine the number of syntaxin 1A microdomains per µm2, 2.4 µm x 2.4 µm regions from the center of the STED images were fast Fourier transform filtered in frequency space using blur (10%) and high pass (30%) options in Metamorph 4.1.7 (Universal Imaging Corporation). The central 0.81 µm2 areas of the processed images were autoscaled and printed. On these printouts the number of clusters was counted by three referees independently, and the averaged number per µm2 was plotted versus the average fluorescence intensity within the respective regions. The result of 80 membrane sheets yielded Fig. 2 C. For presentation, images showing membrane sheets in Fig. 2 were fast Fourier transform filtered applying the blur (30%) option of Metamorph 4.1.7 and scaled accordingly to enhance spotty image features.
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A custom designed MATLAB 7.0.1.24704 (The MathWorks, Natick, MA) routine was applied. The two images were first automatically aligned and a region of interest (ROI) was defined in the green channel using a freehand tool. When placing the ROI on the membrane sheet, edges and obvious staining artifacts were avoided. ROIs were on average 22 µm2 and 40 µm2 in size for the coclustering and the double immunostaining experiments, respectively.
The Pearson correlation coefficient r was calculated within the ROI for the green and red image (i indicates individual pixel locations and av the average pixel intensity) according to r =
i(greeni greenav) x (redi redav)/{
i(greeni greenav)2 x
i(redi redav)2}1/2 (for method, see also Manders et al. (27
)).
In the coclustering experiments membrane sheets of transiently overexpressing cells were analyzed. To estimate the degree of overexpression the fluorescence intensity was calculated subtracting the local background measured in an area outside the membrane sheet from the mean fluorescence intensity within the ROI analyzed. Overexpressing membrane sheet with a background corrected GFP fluorescence of 2001500 counts (4 s image) and netto immunostaining signal of 5002500 counts (1 s image) were included in the analysis.
For each independent experiment, the correlation coefficients obtained from individual membrane sheets were averaged. Experiments yielding <3 sheets were excluded from the overall analysis, resulting in an average of 6.5 membrane sheets per independent experiment.
Colocalization analysis
To determine the colocalization of syntaxin 4 with syntaxin 1 microdomains based on morphological criteria, we used a procedure similar to one previously described (28
). After aligning the two images as described for the correlation analysis, 2021 circles were superimposed on bright fluorescent spots in the syntaxin 4 channel and transferred to identical image locations in the syntaxin 1 channel.
If the fluorescence intensity maximum in the syntaxin 1 channel was located in the same quadrant of the circle and the morphology of the signal resembled that of the syntaxin 4 cluster; the circle was rated as positive (colocalized), if not as negative (not colocalized). Clusters for which a clear assignment was not possible were considered as neutral and excluded from further analysis. To be able to correct for accidental background colocalization, due to the spot density, the circles were also transferred to a mirror image of the syntaxin 1 channel. Corrections were made to ensure that circles on the mirrored image were also placed on the membrane sheet. The assignment as positive, negative, or neutral was carried out as described above.
From five to seven membrane sheets were analyzed for each of three independent experiments. On average 1.20 (6.2%) syntaxin 4 clusters were rated as colocalized with syntaxin 1 microdomains, 18.11 (93.8%) as not colocalized, and 0.73 as neutral (not taken into account when determining the percentages). On the mirrored images an average of 0.96 circles (5.3%) were assigned as positive, 17.45 (94.7%) as negative, and 1.64 as neutral.
Background correction was performed as described (28
) according to the following formula: real colocalization = (measured colocalization background colocalization)/(1 background colocalization/100), yielding a real colocalization of 0.9% ± 1.5% (n = 3 independent experiments, value given as mean ± SE).
| RESULTS |
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Correlation of cluster density and syntaxin expression
To clarify if increasing syntaxin concentration generates either more clusters or a uniformly distributed syntaxin pool, membrane sheets with highly variable expression levels of syntaxin were analyzed at nanoscale optical resolution. To this end, myc-tagged syntaxin 1A was overexpressed in PC12 cells. Membrane sheets were generated and immunostained for endogenous and overexpressed syntaxin 1. For analysis, a microscope setup was used that simultaneously acquires images both in the confocal and the STED mode, featuring focal spot diameters of 192 and 72 nm, respectively (Fig. 2). In the confocal images, membrane sheets with highly variable syntaxin levels could be distinguished due to their staining intensities and were occasionally present in the same field of view (Fig. 2 A, upper right). When image features like spotty structures were enhanced by corresponding scaling (Fig. 2 A, lower panel), no relation between syntaxin distribution and expression level could be observed due to the limited resolution of confocal imaging. This was different in the STED mode. The (192/72)2 = 7.1-fold reduction in focal area achieved over confocal imaging revealed that the brighter the image the more clusters were present (Fig. 2 B, lower panel). A correlation became apparent when cluster density was plotted against image intensity (Fig. 2 C). Even when syntaxin levels were increased four- to fivefold over the endogenous level (taken to be the intensity of stainings on membrane sheets from untransfected cells; J. J. Sieber, K. I. Willig, S. W. Hell, and T. Lang, unpublished data), we did not observe a uniform syntaxin distribution, structures different from clusters, or clusters becoming obviously larger. It should be noted that upon highest overexpression the clusters become so dense that even the resolution of the STED microscope attained in this setup becomes a limiting factor. Nevertheless, although syntaxin 1 is already very abundant in the membrane it can be increased dramatically with all syntaxin 1 still appearing in clusters. This implies that no additional cofactors, apart from perhaps lipids, are essential for the clustering process. In summary, the overexpression studies presented suggest that syntaxin clustering does not depend on cofactors exclusively expressed in neuronal cells. Moreover, it appears that for syntaxin clustering no additional factors at all are limiting and that upon overexpression cluster number rather than size increases. So the nanoscale resolution provided by STED microscopy has proven to be powerful for studying plasmalemmal microdomains.
Correct clustering of syntaxins primarily requires the SNARE motif
The results so far have documented that cluster formation is an intrinsic property of syntaxin 1A. To test if protein-protein interactions are involved and to identify the responsible domain, we simultaneously overexpressed syntaxin 1A constructs carrying either a myc or a GFP tag, enabling us to discriminate the two corresponding syntaxin populations. Simultaneous overexpression of full-length syntaxin variants containing either tag resulted in high, but not perfect, colocalization of the differently visualized constructs (Fig. 3, A and B, upper panel). A similar result was obtained when a double-tagged syntaxin carrying both the myc epitope and the GFP on the N- and the C-terminus, respectively, was expressed. This shows that the minor, albeit noticeable, differences between the two images are probably due to imperfect epitope accessibility. To obtain an objective measure for the similarity of the two molecule distributions, the Pearson correlation coefficient was calculated for the two corresponding images. A correlation coefficient of 1 indicates perfect (pixel by pixel) colocalization, whereas a value of 0 shows that there is no correlation between the signals of the two channels.
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These data suggest that the SNARE motif is primarily responsible for the protein-protein interactions leading to correct clustering. A role of the N-terminal domain, either via homophilic interactions or by forming "bridges" between adjacent SNARE motifs, can be ruled out. Similarly, the TMR plays no role in syntaxin cluster formation, although it is capable of forming cluster-like structures on its own.
Syntaxin 1 and 4 form distinct clusters
We then turned to syntaxin 4, a close relative of syntaxin 1 (65% aa similarity, (34
)), which also has been reported to form clusters (9
,10
). First we tested if syntaxin 1 and 4 are organized in the same, or in distinct, clusters. Membrane sheets were double immunostained for the corresponding syntaxins and colocalization was examined by correlation analysis and by a method based on morphological criteria (28
). No colocalization could be detected by either method (Fig. 4). Being strictly segregated, syntaxin 1 and 4 clusters reflect an intrinsic specificity of syntaxins to form homoclusters.
Next we asked if the N-terminal domain and the linker region are also dispensable for syntaxin 4 clustering. The maximal value in these coclustering experiments was given by the correlation of myc syntaxin 4 with syntaxin 4-GFP. No difference was observed for the according deletion construct when compared to this reference (Fig. 5 B). We could not test the effect of additionally deleting the SNARE motif, as all constructs made with varying linker regions between the TMR and GFP were not successfully sorted to the plasma membrane. We further asked if the clustering mechanism is also capable of separating syntaxin 1 and 4 when both are overexpressed. As shown in Fig. 5 B, coclustering of myc syntaxin 4 with syntaxin 1A-GFP is diminished when compared to syntaxin 4-GFP. However, probably due to an increase of unspecific interactions, the segregation of syntaxin 1 and 4 is weakened upon overexpression. Similar observations were made when myc syntaxin 1A was coclustered with syntaxin 4-GFP (J. J. Sieber and T. Lang, unpublished data).
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| DISCUSSION |
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Interestingly, the TMR is capable of forming separate cluster-like structures on its own. At first sight, this casts into doubt the finding that all clusters observed by STED microscopy are mediated exclusively by SNARE motif interactions because, in the absence of cofactors, overexpressed syntaxin 1A could perhaps form clusters via TMR interactions. However, overexpressed myc syntaxin 1A should then cocluster with TMR-GFP. As this is not the case, our conclusion that no cofactors are required for syntaxin clustering remains solid.
That the TMR alone forms clusters is not unexpected, as recent findings have shown that the integrity of syntaxin 1 and syntaxin 4 clusters depends on cholesterol (9
,10
,12
,14
). Hence, the clustering of the TMR alone is most likely due to the affinity of the TMR for certain lipids and/or to TMR oligomerization (32
). However, for complete and correct clustering cytoplasmic SNARE motif interactions are required. It cannot be ruled out that individual oligomers formed by cytoplasmic interactions are further cross-linked by TMR-mediated interactions or vice versa. Most likely a combination of both mechanisms leads to the concentration of dozens to some hundred syntaxin molecules within one syntaxin cluster, a number in line with our preliminary results (J. J. Sieber and T. Lang, unpublished data).
The physiological role of SNARE clustering
Hetero-SNARE complex formation drives intracellular membrane fusion (6
,37
), but the biological function of homooligomerization is so far unknown. It has been suggested that several SNARE complexes have to cooperate to mediate a fusion event (38
), and syntaxin oligomers could provide the local high concentration required. Further, syntaxin oligomers may represent low stability storage forms, as has been suggested for the homotetrameric coiled-coil structure of the N-terminal domain of SNAP-23 (39
). The notion that a hypothetical tetramer formed by four syntaxins aligned in parallel is destabilized (40
) implies that syntaxin 1A could be released from for example tetramers, without energy consumption, in contrast to its release from stable heterotetrameric SNARE complexes (41
).
The observation that syntaxin 1 and 4 form different clusters documents the specificity of the oligomerization, which, according to our model, lays the ground for the spatial separation of the different biological processes associated with both syntaxins. This appears to be in general the case, as in a recent study also syntaxin 3 and 4 have been described to be concentrated in separate clusters in the plasma membrane of epithelial cells before establishment of cell polarity (42
). In both cases, syntaxin clusters could represent nucleation sites, at which other factors are recruited, leading to the formation of more complex, but locally restricted, protein networks. This idea is supported by the observations that syntaxin 1 clusters define sites for regulated exocytosis in both PC12 cells (9
) and ß-cells (12
) and that fusion of caveolae occurs at syntaxin 4 clusters (10
).
In summary, we propose that self-oligomerization of syntaxins, apart from possibly regulating SNARE activity, is also an important mechanism that, in combination with lipid phase partitioning of proteins, lays the ground for membrane compartmentalization. The attractiveness of this proposal is that it would enable cells to separate sites of different biological activities. The future will show if membrane patterning evolving from a combination of intact lipid infrastructure and specific protein-protein interactions is a general principle widely found in cell biology.
| ACKNOWLEDGEMENTS |
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T.L. was supported by a grant from the Deutsche Forschungsgemeinschaft (LA127212-1).
| FOOTNOTES |
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Submitted on December 13, 2005; accepted for publication January 11, 2006.
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