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* Biophysics Institute, Johannes Kepler University Linz, Linz, Austria; and
Department of Molecular Immunology, Center of Biomolecular Medicine and Pharmacology, Medical University of Vienna, Vienna, Austria
Correspondence: Address reprint requests to Gerhard J. Schütz, Biophysics Institute, Johannes-Kepler-University Linz, Altenbergerstr.69, A-4040 Linz, Austria. Tel.: 43-732-2468-9284; Fax: 43-732-2468-29284; E-mail: gerhard.schuetz{at}jku.at.
| ABSTRACT |
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| INTRODUCTION |
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An additional aspect has been recently introduced into the field, when the mobility of various membrane constituents has been measured in unprecedented detail: although there was evidence for years that transmembrane proteins interact with the membrane skeleton underlying the cytosolic leaflet of the cellular plasma membrane (7
), single particle tracking at 25 µs time resolution revealed that even the diffusion of gold-labeled phospholipids or lipid-anchored proteins in the exoplasmic leaflet was affected by the membrane skeleton (8
,9
); transient confinement to periodic corrals with a size ranging from 32 to 230 nm for different cell types has been detected (9
). This model of hop diffusion appeared attractive because it provides an elegant explanation for the observed increase in the apparent viscosity of the plasma membrane compared to artificial lipid bilayers (10
12
). Because confinement of probes without direct contact to the confining elements was difficult to interpret, lipid rafts were suggested as the most promising transmitting elements. The residence time of a lipid within a corral would then correlate with the lifetime of the metastable raft itself, which the probe lipid is part of; based on these studies, lifetimes of only a millisecond or less are frequently attributed to rafts (13
). However, these studies are also prone to errors: it has been found that gold labeling affects the motion of the diffusing probe in studies on model membranes (14
) and cell membranes (15
). The reason might be the size of the gold label that exceeds the size of the probe molecule severalfold as well as potential cross-linking of probe molecules by the gold particle that is coated with an antiprobe reagent.
Here, we investigated the mobility of CD59a GPI-anchored proteinin the plasma membrane of living T24 (ECV) cells using single molecule microscopy. By employing minimum invasive labeling via fluorescent Fab fragments the recorded single molecule trajectories closely reflect the movement of an unlabeled protein. To sense confinement zones at the reported size of 120 nm (9
), we dramatically improved the resolution in space and time of state of the art single molecule imaging devices down to 22 nm and 1 ms, respectively. For appropriate data interpretation, we derived an analytical approximation describing the time dependence of mean square displacements for diffusing molecules impeded by an infinite array of partially permeable barriers.
| THEORY |
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with Dmicro the short-range diffusion constant of the molecule within the confined area (
); f has been calculated by Powles et al., yielding
(16
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, where
describes the residence time within a corral. MSD increases with increasing time-lag and converges to
![]() | (1) |
In this scenario, the confinement offset CO contains the information about the size of the confinement zones. Considering scaling invariance,
can be regarded as a sole function of the dimensionless variable
.
sets the residence time of a confined molecule,
, in relation to the time a freely diffusing molecule would stay in the same region; per definition
. As a rule of thumb,
can be interpreted as the confinement strength. In general, partially permeable corrals will lead to a decrease in the offset, which will vanish when the barriers are totally removed.
In the following we derive an analytical approximation for MSDhop (supplemental Fig. 1, Supplementary Material). For this, we estimate the distance a molecule moves between two independent observations separated by the time-lag tlag, characterized by the start position
and the end position
. Let us begin with an impermeable corral, and introduce weak permeability. The physical origin may be a single gate in the corral boundary. Whenever the molecule hits the gate, it will escape the corral with probability 1. Let us further characterize the trajectory of the molecule by time-averaging its positions within each visited corral, yielding in particular the average starting position
and end position
. In this scenario of quasiimpermeable boundaries, the time-averaged positions lie in the corral center. In the limit
, the time-dependent component of the mean square displacement is given by the movement of the average position yielding
. The actual position of the molecule within the domain at the time point of the observation will deviate from
by
; according to Powles et al. (16
), the distance is given by
. Noting that this additional distance has to be considered for both the start and end position of the molecule, we estimate
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of the molecular motion will mediate the transition to the adjacent corral. This fraction is characterized by free diffusion with diffusion constant
and therefore does not contribute to the confinement offset. The remaining fraction
of the trajectory will experience no transitions, and is therefore described by totally confined diffusion. We account for the contributions of the two fractions by the modification
.
Moreover, due to fractions of free diffusion in the trajectory the apparent extension of the observable corrals is reduced. We can estimate the area portion of the free diffusion subfraction by
. In the remaining area
the random walker experiences full confinement. The total movement of a random walker in partially permeable corrals is therefore well approximated by
.
This equation provides an analytical approximation for hop diffusion in square corrals; its agreement with Monte Carlo simulations for different values of
is shown in Fig. 1 A. The asymptotic behavior for short time-lags
approximates unbounded motion. For long time-lags, we find
, which converges to
for
(Fig. 1 B). It has to be noted that for finite
the shape of the fully confined subsections may deviate from a perfect square; however, the deviations are quantitatively negligible in the context of this study.
In addition, movements of the molecule during the illumination time affect the results. For free Brownian motion with diffusion constant Dmacro, a negative contribution to the offset
has to be taken into account (17
). For hop diffusion, a qualitative estimate (18
) and a quantitative approximation (19
) have been given in the literature, which we extend here by a more general analytical expression. The following heuristic argument assumes that even for impermeable barriers a confined molecule shows free diffusion, although only for a short period of time
, i.e., with the probability
,
no effects due to confined molecular movements during the illumination time are observable. On the contrary, with a probability 1 p the molecular motion collapses to the center of the confinement region, which reduces the respective mean square displacement to zero. This approach provides a valid approximation in the parameter range of our experiments, as tested by Monte Carlo simulations (Fig. 1 C). Considering all above contributions, a total mean square displacement for hop diffusion
![]() | (2) |
Assuming rapid free Brownian motion inside the corrals (Dmicro
10 µm2/s), recording of the full time course of MSD represents a challenging task, as the initial rising phase would occur at
. Still, the asymptotic behavior of MSD with
contains information about confined diffusion due to an additional offset CO (Eq. 1 and Fig. 1):
![]() | (3) |
In an experimental realization, the nonzero localization precision has to be further taken into account by
![]() | (4) |
,
denoting localization precision, i.e., the standard deviation in a data set of positions from consecutive images of a single immobile molecule.
Error analysis
For error propagation analysis, we accounted for contributions due to errors in determination of the confinement offset
,
, and of the macroscopic diffusion constant Dmacro,
(for illustration, see Supplemental Fig. 2, Supplementary Material). First, the confinement offset was corrected for illumination time effects,
. Using Gaussian error propagation analysis according to
the expected error is given by
![]() |
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, which yields consistency with the measured values
,
,
in a one-
-range:
. Note that both COcorr and
are functions of L and
.
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| MATERIALS AND METHODS |
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Microscopy
Experiments were performed on a modified epi-fluorescence microscope (Axiovert 200, Zeiss, Germany), which was equipped with a temperature control system (POCmini Zeiss). Samples were illuminated via the epiport through a 100x NA = 1.4 Plan-Apochromat objective (Zeiss) using the 647-nm line of a Kr+-ion laser (Innova, Coherent, Santa Clara, CA) at high excitation intensities of up to I = 44 kW/cm2. Still, a substantial gain in signal
has been achieved due to the high saturation intensity Is = 19 kW/cm2 for Alexa647 (Fig. 2). An acousto-optic modulator (Isomet, 1205C) was used to achieve exact timing of the laser illumination till. After filtering (holographic notch plus 647.1 nm, Kaiser Optical Systems, Ann Arbor MI; custom dichroic, Chroma, Brattleboro, VT), images were recorded on a back-illuminated liquid nitrogen cooled charge-coupled device (CCD) camera (Micro Max 1300-PB, Roper Scientific, Trenton, NJ). Short delays between two images were enabled by operating the camera in kinetics mode; upon illumination, individual images within a time sequence were transferred into a masked region of the chip. In this mode, the time delay tdelay between two consecutive images is only limited by the parallel shift time of tp = 6 µs and the number of rows per image nrow according to
. Consecutive images were recorded with the following parameter settings: (till = 50 µs; tdelay = 0.45 ms), (0.65 ms; 0.4 ms), (0.3 ms; 0.7 ms), (0.3 ms, 14.7 ms), (1 ms, 49 ms), (1 ms, 100 ms). All experiments were performed in Dulbecco's phosphate buffered saline (PBS) (PAA-Laboratories).
Data analysis
Images were analyzed using in-house algorithms implemented in MATLAB (MathWorks, Natick, MA). Individual diffraction limited signals were selected and fitted with a Gaussian intensity profile, yielding the single molecule position
with an accuracy
. Single molecule trajectories were reconstructed according to previous studies (20
), and the mean square displacement
,
was calculated as a function of the time lag
.
In Figs. 3, 4, 7, and 8 error bars indicate errors of the mean
. To estimate the errors of the confinement offset
and the diffusion constant
, Gaussian distributed values specified by the mean (MSD) and error of the mean (
) of the measured data were fitted with Eq. 1. The deviation of the individual fit results obtained from multiple fits yield appropriate predictions of the errors
,
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. If n <
, the barrier is crossed; if not, the molecule remains at its previous position. Simulated trajectories were analyzed in the same way as original data, i.e., the MSD was calculated as a function of tlag.
Test measurements
We tested if the system is sensitive enough to resolve minute movements. Latex spheres (30 nm) were immobilized to a glass slide, which was moved periodically along one dimension with an amplitude L = 200 nm and a frequency of 10 Hz by using a piezo-driven stage (Physik Instrumente, Karlsruhe, Germany). Fig. 3 shows MSD as a function of the time-lag recorded with 50-ms time resolution: as expected, MSD alternates between the minimum square distance specified by the localization precision, and the maximum square distance of
for the applied sine-wave. The measured value L = 170 nm just slightly deviates from the set amplitude (15% error).
| RESULTS |
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. We therefore calibrated our system by measuring the localization precision for all experimental conditions used in the further experiments. Cells were labeled with a fluorescent antibody to CD59, fixed, and single molecule trajectories were recorded and analyzed (Fig. 4). Within experimental errors, MSD was found to be constant when plotted as a function of the time-lag. From the offset of the curves,
was calculated according to Eq. 4. We determined the localization precision under various illumination conditions, and plotted
as a function of the average number of counts detected from a single molecule (Fig. 5). The expected proportionality (25
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1 fluorescent CD59 molecule per 10 µm2 were adjusted throughout our studies. An image sequence was recorded with tdelay = 0.4 ms and till = 0.65 ms, and the position of individual molecules was determined on each image by fitting with a two-dimensional Gaussian profile. At the highest magnification shown, the trajectory of a single CD59 molecule is plotted as overlay (red points); due to the high temporal resolution, the total recorded molecular motion remains within one pixel of 200 nm. In this experiment, an average number of 340 counts per molecule was obtained, concomitant with a localization precision of 22 nm, indicated by the radius of the circles. The length of the trajectory of six observations was representative throughout our study.
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). Similarly, no saturation or offset has been detected when measurements were performed at the top membrane, or at 37°C. However, as expected, the latter measurement revealed a higher diffusion constant D = 0.46 ± 0.05 µm2/s (Fig. 7 A). We conclude that on a length scale of
the membrane protein diffuses freely; if confinement regions exist, they are either too large or too small to be detected directly in this plot.
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, with d the anomalous diffusion exponent. The measured value
is close to unity, showing that the mobility over long timescales was decreasing only slightly. For the applied conditions there is no indication for confinement of CD59 to regions with a size
.
We next tested whether confinements could be introduced by transient cross-linking of two CD59 molecules. We therefore repeated the above experiments using the full antibody to CD59. This antibody had the additional advantage that it could be labeled with on average more than one Alexa647 molecule without losing its binding affinity. We made use of this advantage by reducing the illumination time to 50 µs; during such short illuminations, the molecules are practically immobile, which allows for determining the correct position without influences due to positional averaging according to Eq. 3. Fig. 8 shows the results of the analysis: although the diffusion constant is decreased to D = 0.11 ± 0.03 µm2/s at 20°C (D = 0.17 ± 0.01 µm2/s at 37°C) due to the motion of a larger object in the plasma membrane (31
), no significant offset was detected.
It could still be possible that only a fraction of molecules undergoes confined diffusion, which is masked by the majority of nonconfined molecules. We therefore investigated the statistics of the diffusion process by measuring the probability distribution P(
r2, tlag) of individual square displacement steps; this function specifies the probability that a particle starting at the origin will be found within a circle of radius
r at time tlag. Although for free Brownian motion of a single component a monoexponential function is expected according to
, components with a different mobility would contribute as additional fractions with different characteristic diffusion lengths r0 (20
). Fig. 9 shows the according distribution of the data displayed in Fig. 7 A, 37°C: no indication for additional components was found. In addition, all other recorded data could be fitted perfectly with a monoexponential function (supplemental Figs. 4 and 5 and data not shown).
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| DISCUSSION |
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120 nm (8
We used fluorescent Fab fragments to CD59 for labeling, and recorded the trajectories of single protein molecules at maximum resolution in space and time. To achieve best localization precision, the signal brightness had to be maximized. Increasing the illumination time for this purpose, however, was impracticable since residual movements during illumination would have strongly affected the shape of the recorded trajectories, resulting in an underestimation of confinement sizes (18
). We therefore selected a dye with high extinction coefficient
= 220,000 M1 cm1 at 647 nm and high saturation intensity
, which can be rapidly cycled between ground state and excited state. Using Alexa647 and employing a high excitation intensity I = 44 kW/cm2, on average 340 photons have been detected from a single molecule during an illumination time of only 0.6 ms. In addition to signal brightness, the image pixelation and background noise define the precision for localizing single molecules (25
,26
): for optimum performance, a pixel-size equal to the standard-deviation of the point-spread function of 200 nm was selected (33
). Finally, by choosing long wavelength excitation autofluorescence background could be dramatically reduced; for till = 0.6 ms, a background noise b = 6 counts was measured. The precise value of the localization precision was determined from single molecule trajectories recorded on fixed cells for different illumination times; it was in excellent agreement with theoretical predictions (26
). Experiments have been performed at settings in a range of 22 nm <
xy < 30 nm.
Single molecule observations are terminated by photobleaching, which sets a limit to the length of individual trajectories (34
). The application of reducing agents to increase the stability of fluorophores was not feasible here, as such reagents are toxic to cells. We therefore did not attempt to image confined diffusion directly at the single molecule level, but to detect its fundamental consequence: an increase in average jump distances due to the hypothetical rapid random walk within a corralhere termed confinement offset COwhich adds up to the macroscopically observed slow diffusion. A similar consequence has been recently suggested as promising observable for analyzing confined diffusion using fluorescence correlation spectroscopy (35
,36
). On the millisecond timescale the confinement offset solely depends on the corral size L and the confinement strength
; an analytical approximation has been derived as basis for estimating the confinement strength. Maximum sensitivity of the assay is obtained at high frame rates, where the contribution of CO to the observed jump distances becomes large compared to the macroscopic slow diffusion. We therefore employed the kinetics mode of the CCD camera to record images at acquisition rates of up to 1000 frames per second.
Let us assume corrals of 120 nm size as reported for T24(ECV) cells by single particle tracking (9
). Within the bounded region, CD59 shall move rapidly with a diffusion constant of Dmicro = 8 µm2/s (9
); in this case, the particle would diffuse freely for a time
, too fast to be resolved with single molecule methods. For the experiment shown in Fig. 7 (37°C), however, according to Eq. 3 we would expect a confinement offset
, which was not detected here (
). Even more so, variation of the temperature or usage of full antibodies to induce dimerization had no significant effects on the confinement offset (see Table 2).
The resolution of single molecule microscopy reaches its limits in the presented study. Residual errors in determination of CO might mask the effect of periodic permeable barriers. To provide an unambiguous conclusion, we performed an error analysis based on the analytical description of hop diffusion (Fig. 10). Apparently, the value of CO depends both on L and
, which can be regarded as the only unknowns in the model (Eq. 3). In particular, for small values of
CO would reduce to zero, which renders a precise measurement of the confinement size in this parameter regime difficult and prone to errors. In contrast, high values of
are concomitant with high values of the hypothetical microscopic diffusion constant Dmicro; in this regime, results are sensitive to positional averaging effects according to Eqs. 2 and 3. It is therefore not possible to determine L and
independently by this method. However, we can provide an upper boundary for the parameter duplet
by accounting for all potential sources of errors. As described in the error analysis section, we first estimated the error of each measured parameter (
,
,
), calculated via Gaussian error propagation analysis
as a function of L and
, and compared this value with the expected confinement offset
; the equality
therefore defines a region bounded by the maximum values of the duplet
, which are consistent with the data within a one-sigma confidence limit (84% accuracy). For each experimental realization (variation of temperature, illumination time, full antibody versus Fab fragment) we determined the maximum values of the duplet
, which would yield consistency between the measured data and the hypothesis of square confinement regions in the plasma membrane (Fig. 10). In other words, the lower left region of the plot bounded by the set of curves represents the parameter range, in which confinement regions cannot be excluded within the one-sigma confidence limit. It has to be noted that for each data a second duplet
exists that provides a solution to the equation
. However, this duplet specifies a lower boundary to
, yielding unrealistically high values of Dmicro and has thus not been taken into further account.
For large values of L the curves approach
, which is equivalent to unconfined diffusion; in other words, the existence of large but highly permeable corrals would be in agreement with the data. This is not unexpected, as with
deviations of MSD from a linear increase vanish. In contrast, high values of
are concomitant with the extreme case of strong confinement, which directly provide an estimate for the maximum value of L consistent with the data. The spread within the curve set reflects the different limitations of the applied conditions: e.g., although achieving highest localization precision using long illumination times, positional averaging due to residual motion during the illumination renders this data less strict. This effect can be observed when comparing the blue curve representing experiments at till = 50 µs with the remaining curves recorded at 10 times longer illuminations. At till = 50 µs, diffusion during illumination hardly affects the observed confinement offset, therefore the curve is rather flat for small values of L.
The presented analysis has been based on a homogenous population of molecules moving in a perfectly periodic meshwork of barriers. Let us estimate the consequences of deviations from this model. One might speculate that not all molecules were confined, with a large number of freely diffusing molecules masking the confinement effect. This scenario, however, is not supported by our data, as statistical analysis did not indicate any additional component with a distinct diffusion behavior (Fig. 9). Moreover, the expected high value of Dmicro
8 µm2/s would be inconsistent with the measured Dmacro = 0.46 µm2/s. Let us next assume corrals to be not perfectly periodic, with considerable variations in size. A distribution of L values would yield an average MSD according to
, with p(L2)dL2 the probability of finding a domain with area in an interval [L2, L2 + dL2]. Since
, analysis of the data would yield a proper estimate of the average domain area, but a too large estimate of the domain size, resulting even in an overestimation of L. Monte Carlo simulations performed on domains with broad size-distributions corroborate the interpretation (data not shown).
We can interpret the obtained results in two different ways: first, strong confinements with
exist in T24(ECV) cells, however, with a size much smaller than reported in the literature (9
). In this scenario, our data provide strong evidence that such corrals have to be smaller than
60 nm, at 20°C even smaller than 40 nm. We want to point out, however, that there is no report in the literature for the existence of confinements in T24(ECV) cells with such a size, rendering this scenario rather speculative. Second, periodic restrictions to the free Brownian motion of CD59 in T24(ECV) cells exist with the reported value of L = 120 nm (9
), but have a low confinement strength
. In this case, the barriers are hardly sensed by the moving molecule, leading to no significant decrease of Dmacro compared to Dmicro.
In conclusion, our data clearly indicate that the motion of the GPI-anchored protein CD59 is not restricted by periodic cytoskeletal barriers. At this point, it is difficult to reason why the presented approach did not yield the same results as previous studies performed with larger particles as labels. It seems as if gold labeling leads to an exaggerated confinement strength, maybe due to its ability to transiently bind specifically or unspecifically to other membrane proteins. Single particle tracking of gold-labeled membrane constituents may still provide a proper method to probe diffusion barriers; however, our results show that the single molecule hop frequency and concomitantly the confinement strength cannot be directly inferred from single particle tracking studies.
| SUPPLEMENTARY MATERIAL |
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| ACKNOWLEDGEMENTS |
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This work was supported by the Austrian Science Fund (FWF), project Nos. P15053, P15025, and Y250-B10, the Competence Center for Biomolecular Research-Vienna, and the GEN-AU project of the Austrian Federal Ministry for Education, Science and Culture.
| FOOTNOTES |
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, localization precision; GPI, glycosylphosphatidylinositol; L, confinement size; MSD, mean square displacement;
, confinement strength; till, illumination time. Submitted on August 16, 2006; accepted for publication January 22, 2007.
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A. M. S. Niehaus, D. G. Vlachos, J. S. Edwards, P. Plechac, and R. Tribe Microscopic Simulation of Membrane Molecule Diffusion on Corralled Membrane Surfaces Biophys. J., March 1, 2008; 94(5): 1551 - 1564. [Abstract] [Full Text] [PDF] |
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