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Centre for Cellular and Molecular Biology, Hyderabad, India
Correspondence: Address reprint requests to Amitabha Chattopadhyay, Tel.: 91-40-2719-2578; Fax: 91-40-2716-0311; E-mail: amit{at}ccmb.res.in.
| ABSTRACT |
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8 nm. This could be attributed to difference in membrane microenvironment experienced by the NBD groups in these analogs. Interestingly, the membrane environment of the NBD groups is sensitive to the presence of cholesterol, which is supported by time-resolved fluorescence measurements. Importantly, the orientation of melittin is found to be parallel to the membrane surface as determined by membrane penetration depth analysis using the parallax method in all cases. Our results constitute the first report to our knowledge describing the orientation of melittin in cholesterol-containing membranes. These results assume significance in the overall context of the role of membrane lipids in the orientation and function of membrane proteins and peptides. | INTRODUCTION |
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Melittin adopts predominantly random coil conformation as a monomer in aqueous solution (6
). However, at high ionic strength, pH, or peptide concentration, it self-associates to form an
-helical tetrameric structure driven by the formation of a hydrophobic core (2
,6
,7
). Interestingly, melittin adopts an
-helical conformation when bound to membranes of varying lipid composition (2
,8
11
) or membrane-mimetic systems (12
,13
). Despite the availability of a high-resolution crystal structure of tetrameric melittin in aqueous solution (14
), the structure of the membrane-bound form is not yet resolved by x-ray crystallography. Yet, the importance of the membrane-bound form stems from the observation that the amphiphilic
-helical conformation of this hemolytic toxin in membranes resembles those of apolipoproteins and peptide hormones (15
,16
), signal peptides (17
), and the envelope glycoprotein gp41 from the human immunodeficiency virus (HIV) (18
). Furthermore, understanding melittin-membrane interaction assumes greater significance due to the observation that melittin mimics the N-terminal of HIV-1 virulence factor Nef1-25 (19
).
Melittin is intrinsically fluorescent due to the presence of a single tryptophan residue, Trp-19, in the C-terminal region, which has been extensively used as a sensitive probe to obtain information on the interaction of melittin with membranes and membrane-mimetic systems (9
13
,20
22
). We have previously monitored the microenvironment experienced by the sole tryptophan in membrane-bound melittin and its modulation by anionic phospholipids, cholesterol, and unsaturation utilizing the wavelength-selective fluorescence approach (9
11
,23
). We showed that the tryptophan residue is located in a motionally restricted interfacial region of the membrane in all cases. However, a disadvantage of utilizing tryptophan fluorescence is that the information essentially comes only from the C-terminal region of melittin, and information about the N-terminal region is lacking. The lack of information about the N-terminal region of melittin makes it difficult to comment about the orientation of melittin in membranes.
In this article, we covalently labeled the amino terminal (Gly-1) and Lys-7 of melittin (see Fig. 1) with an environment-sensitive fluorescent group 7-nitrobenz-2-oxa-1,3-diazol-4-yl (NBD) to obtain information regarding the orientation and dynamics of N-terminal region of membrane-bound melittin using NBD fluorescence. The NBD group is widely used to fluorescently label proteins, peptides, and lipids (24
), and has previously been shown by our group (25
,26
) and others (27
) to be a very sensitive probe of the environment in which it resides. Because the sole tryptophan is located at the C-terminal region of melittin, the information obtained from NBD-melittin analogs would provide an additional handle to monitor the conformation and dynamics of melittin bound to membranes of various lipid composition. In addition, this approach would be useful in monitoring the dynamics of the microenvironment of the functionally important Lys-7 residue, which has previously been shown to be crucial for the hemolytic activity of melittin (28
). Since the orientation (parallel or perpendicular to the plane of the membrane bilayer) and the lytic activity of melittin have been reported to be dependent on the physical condition and the composition of the membrane in which it is bound (9
,10
,29
31
), we have monitored the effect of negatively charged lipids and the presence of cholesterol on the organization and dynamics of NBD-labeled melittin analogs. Importantly, we show here that NBD labeling does not affect the secondary structure and hemolytic activity of membrane-bound melittin. Overall, our results suggest that the orientation of melittin is parallel to the plane of the membrane surface in all the membrane systems studied, which assume significance in the context of the mechanism of action of melittin.
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| MATERIALS AND METHODS |
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) of the tryptophan residue, which is 5570 M1cm1 at 280 nm (9
Assay for hemolytic activity
The hemolytic activity of melittin was evaluated using Wistar rat erythrocytes as described previously (31
). Erythrocytes were isolated from heparinized blood by centrifugation at 3000 rpm for 5 min and washed three times with HEPES buffer (5 mM HEPES, 150 mM NaCl, pH 7.4). Increasing concentrations of native melittin and NBD-melittin analogs (N-ter and Lys-7) were added to aliquots of 0.5 ml suspension that correspond to
107 cells in Eppendorf tubes and were incubated at 37°C in duplicates for 30 min with gentle mixing. The tubes were then centrifuged and the absorbance of the released hemoglobin in the supernatants was measured at 540 nm in a 96-well microtitre plate. The hemolysis obtained with water was taken as 100%. The cell suspension in buffer in the absence of peptide served as background control. All hemolytic assays were carried out on the same day of blood collection.
Sample preparation
All experiments were done using large unilamellar vesicles (LUVs) of 100 nm diameter containing 1 mol % melittin except in vesicles containing 40 mol % cholesterol where 0.5 mol % of melittin was used to ensure complete binding (10
). In general, 640 nmol (100 nmol for fluorescence quenching experiments and 2560 nmol for circular dichroism (CD) measurements) of total lipid (DOPC or DOPC/60% DOPG or DOPC/cholesterol) was dried under a stream of nitrogen while being warmed gently (
35°C). After further drying under a high vacuum for >3 h, 1.5 ml of 10 mM MOPS, 150 mM NaCl, pH 7.2 buffer was added, and the sample was vortexed for 3 min to disperse the lipid and form homogeneous multilamellar vesicles. LUVs of 100 nm diameter were prepared by the extrusion technique using an Avestin Liposofast Extruder (Ottawa, Ontario, Canada) as previously described (34
). Briefly, the multilamellar vesicles were freeze-thawed five times using liquid nitrogen to ensure solute equilibration between trapped and bulk solutions, and then extruded through polycarbonate filters (pore diameter of 100 nm) mounted in the extruder fitted with Hamilton syringes (Hamilton, Reno, NV). The samples were subjected to 11 passes through polycarbonate filters to give the final LUV suspension. To incorporate NBD-melittin analogs into membranes, a small aliquot containing 6.4 nmol (1 nmol and 25.6 nmol for quenching and CD measurements, respectively) of the melittin analog was added from a stock solution in water to the preformed vesicles and mixed well. The samples were incubated in dark for 12 h at room temperature (
23°C) for equilibration before making measurements. Background samples were prepared the same way except that NBD-labeled melittin was not added to them. All experiments were done at room temperature (
23°C).
Depth measurements using the parallax method
The actual spin (nitroxide) content of the spin-labeled phospholipids (Tempo- and 5-PC) was assayed using fluorescence quenching of anthroyloxy-labeled fatty acids (2- and 12-AS) as described earlier (35
). For depth measurements, liposomes were made by the ethanol injection method (36
). These samples were made by drying 160 nmol of total lipid (DOPC, or DOPC/60% DOPG, or DOPC/cholesterol) containing 10 mol % spin-labeled phospholipid (Tempo- or 5-PC) under a stream of nitrogen while being warmed gently (
35°C) followed by further drying under a high vacuum for at least 3 h. The dried lipid film was dissolved in ethanol to give a final concentration of 40 mM. The ethanolic lipid solution was then injected into 10 mM MOPS, 150 mM NaCl, pH 7.2 buffer, while vortexing to give a final concentration of 0.11 mM total lipid in the buffer. NBD-melittin analogs (N-ter and Lys-7) were incorporated into membranes by adding a small aliquot containing 1.6 nmol of peptide from a stock solution in water to the preformed vesicles and mixed well to give membranes containing 1% melittin (0.5% in the case of 40 mol % cholesterol). The lipid composition of these samples were as follows: i), DOPC (90%) and 5- (or 12)-PC (10%); ii), DOPC (30%), DOPG (60%), and Tempo- (or 5)-PC (10%); iii), DOPC (70%), Tempo- (or 5)-PC (10%), and cholesterol (20%); and iv), DOPC (50%), Tempo- (or 5)-PC (10%), and cholesterol (40%). Duplicate samples were prepared in each case except for samples lacking the quencher (Tempo- or 5-PC) where triplicates were prepared. Background samples lacking the fluorophore (NBD-melittin analog) were prepared in all experiments, and their fluorescence intensity was subtracted from the respective sample fluorescence intensity. Samples were kept in the dark for 12 h before measuring fluorescence.
Steady-state fluorescence measurements
Steady-state fluorescence measurements were performed with a Hitachi F-4010 spectrofluorometer using 1 cm pathlength quartz cuvettes. Excitation and emission slits with a nominal bandpass of 5 nm were used for all measurements. Background intensities of samples in which melittin was omitted were subtracted from each sample spectrum to cancel out any contribution due to the solvent Raman peak and other scattering artifacts. The spectral shifts obtained with different sets of samples were identical in most cases. In other cases, the values were within ±1 nm of the ones reported. Fluorescence polarization measurements were performed at room temperature (
23°C) using a Hitachi polarization accessory. Polarization values were calculated from the equation (37
):
![]() | (1) |
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Time-resolved fluorescence measurements
Fluorescence lifetimes were calculated from time-resolved fluorescence intensity decays using a Photon Technology International (London, Western Ontario, Canada) LS-100 luminescence spectrophotometer in the time-correlated single-photon counting mode. This machine uses a thyratron-gated nanosecond flash lamp filled with nitrogen as the plasma gas (16 ± 1 inches of mercury vacuum) and is run at 1820 kHz. Lamp profiles were measured at the excitation wavelength using Ludox (colloidal silica) as the scatterer. To optimize the signal/noise ratio, 10,000 photon counts were collected in the peak channel. All experiments were performed using excitation and emission slits with a bandpass of 6 nm or less. The sample and the scatterer were alternated after every 5% acquisition to ensure compensation for shape and timing drifts occurring during the period of data collection. This arrangement also prevents any prolonged exposure of the sample to the excitation beam thereby avoiding any possible photodamage of the fluorophore. The data stored in a multichannel analyzer were routinely transferred to an IBM PC for analysis. Fluorescence intensity decay curves so obtained were deconvoluted with the instrument response function and analyzed as a sum of exponential terms:
![]() | (2) |
i is a preexponential factor representing the fractional contribution to the time-resolved decay of the component with a lifetime
i such that
i
i = 1. The decay parameters were recovered as described previously (12

for biexponential decays of fluorescence were calculated from the decay times and preexponential factors using the following equation (37
![]() | (3) |
Fluorescence quenching measurements
Cobalt quenching experiments of NBD fluorescence in membranes of varying lipid composition were carried out by measurement of fluorescence intensity of melittin analogs after serial addition of small aliquots of a freshly prepared stock solution of 0.4 M cobalt chloride in water to a stirred sample followed by incubation for 2 min in the sample compartment in the dark (shutters closed). The excitation wavelength used was 465 nm and emission was monitored at 530 nm. The fluorescence intensities were corrected for dilution. Corrections for inner filter effect were made using the following equation (37
):
![]() | (4) |
![]() | (5) |
o, where kq is the bimolecular quenching constant and
o is the lifetime of the fluorophore in the absence of quencher.
Circular dichroism measurements
CD measurements were carried out at room temperature (
23°C) on a JASCO J-715 spectropolarimeter that was calibrated with (+)10-camphorsulfonic acid. The spectra were scanned in a quartz optical cell with a pathlength of 0.1 cm. All spectra were recorded in 0.2 nm wavelength increments with a 4-s response and a bandwidth of 1 nm. For monitoring changes in secondary structure, spectra were scanned in the far-UV range from 205 to 250 nm at a scan rate of 50 nm/min. Each spectrum is the average of 15 scans with a full-scale sensitivity of 50 mdeg. All spectra were corrected for background by subtraction of appropriate blanks and were smoothed making sure that the overall shape of the spectrum remains unaltered. Data are represented as molar ellipticities and were calculated using the equation:
![]() | (6) |
obs is the observed ellipticity in mdeg, l is the pathlength in cm, and C is the concentration of melittin analog in mol/L. | RESULTS |
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-helical conformation (8
-helical) does not appear to be sensitive to NBD labeling. Taken together, these results suggest that NBD-melittin analogs are structurally and functionally similar to native melittin and therefore could be used to monitor the organization and dynamics of the N-terminal region of melittin in membranes.
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The fluorescence emission maximum of N-ter and Lys-7 NBD-melittin analogs bound to membranes of varying lipid composition is
525 and 530533 nm, respectively, when excited at 465 nm (see Fig. 4). The shifts in the maxima of fluorescence emission of the NBD group of NBD-melittin analogs when bound to vesicles containing DOPC, DOPC/60% DOPG, and DOPC/20% cholesterol as a function of excitation wavelength are shown in Fig. 4. The center of mass of emission has been reported as the fluorescence maximum. As the excitation wavelength is changed from 465 to 510 nm, the emission maximum of membrane-bound melittin (N-ter) is invariant in zwitterionic and anionic membranes. However, a slight red shift in emission maximum is observed in cholesterol-containing membranes when excitation is carried out at 510 nm (see Fig. 4 A). In contrast, the emission maxima of Lys-7 NBD-melittin are shifted from 531 to 538 nm (in DOPC), 530538 nm (DOPC/60%DOPG), and 533543 nm (DOPC/20% cholesterol) when the excitation wavelength is changed from 465 to 520 nm (see Fig. 4 B). The resultant REES in these cases are shown in Table 1. Such dependence of the emission maximum on excitation wavelength is characteristic of REES. This implies that the NBD group of Lys-7 NBD melittin is localized in a motionally restricted region of the membrane in all these cases. This is consistent with the interfacial localization of the melittin when bound to membranes (9
11
,23
,48
). The membrane interface is characterized by unique motional and dielectric characteristics distinct from both the bulk aqueous phase and the more isotropic hydrocarbon-like deeper regions of the membrane (39
,49
). This specific region of the membrane exhibits slow rates of solvent relaxation and is also known to participate in intermolecular charge interactions and hydrogen bonding through the polar headgroup. These structural features that slow down the rate of solvent reorientation have previously been recognized as typical features of microenvironments giving rise to significant REES effects. It is therefore the membrane interface that is most likely to display red edge effects (39
).
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542 nm in water), the secondary structural features (Fig. 3), and functional evidence (Fig. 2). We therefore attribute this result to flexible motion of amino terminal region of membrane-bound melittin. This is consistent with previous observations that the first few residues in the N-terminal region of membrane-bound melittin do not adopt helical conformation (50
Time-resolved fluorescence measurements of membrane-bound melittin
Fluorescence lifetime serves as a faithful indicator of the local environment in which a given fluorophore is placed (52
). In addition, it is well known that fluorescence lifetime of the NBD group in particular is sensitive to its local environment (53
). A typical decay profile of N-ter NBD melittin bound to DOPC membranes with its biexponential fitting and the statistical parameters used to check the goodness of the fit is shown in Fig. 5. The fluorescence lifetimes of NBD-melittin analogs bound to various membrane systems are shown in Table 2. As seen from the table, all fluorescence decays could be fitted well with a biexponential function. The mean fluorescence lifetime obtained for the membrane-bound N-ter and Lys-7 NBD-melittin analogs in DOPC membranes is 9.49 and 6.93 ns, respectively. Interestingly, upon incorporation of negatively charged lipid and cholesterol, the mean fluorescence lifetimes of NBD-melittin analogs decrease significantly. This indicates a marked increase in polarity around the excited state NBD group of melittin analogs in these membrane systems. In general, it is known that the presence of negatively charged lipid and cholesterol influences the hydration profile of membranes (9
,54
,55
). The fluorescence lifetime of NBD-melittin in pure water reduces to
2.0 ns (not shown). This is consistent with previous observations in which it was reported that the fluorescence lifetime of the NBD group is reduced in presence of water (25
,26
,53
). The change in polarity around the NBD group of membrane-bound NBD-melittin analogs could therefore be attributed to increased water penetration in the interfacial region of membranes containing negatively charged lipid and cholesterol.
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To ensure that the polarization values measured for membrane-bound melittin are not influenced by lifetime-induced artifacts, the apparent (average) rotational correlation times were calculated using Perrin's equation (37
):
![]() | (7) |


is the mean fluorescence lifetime taken from Table 2. Although Perrin's equation is not strictly applicable to this system, it is assumed that this equation will apply to a first-hand approximation, especially because we have used mean fluorescence lifetimes for the analysis of multiple component lifetimes. The values of the apparent rotational correlation times, calculated this way using a value of ro of 0.354 (56
Fluorescence polarization is also known to be dependent on excitation and emission wavelengths in motionally restricted media (57
). We measured polarization changes of NBD-melittin analogs bound to zwitterionic, anionic, and cholesterol-containing membranes as a function of excitation and emission wavelengths (see Fig. 6). Our results show that membrane-bound NBD-melittin analogs exhibit wavelength-dependent changes in polarization for both excitation and emission wavelengths. This reinforces our previous conclusion that melittin is localized in a motionally restricted interfacial region of the membrane in these cases (see results of depth analysis below).
Cobalt quenching of NBD fluorescence
The above results show that the presence of negatively charged lipid and cholesterol in DOPC membranes enhances the polarity of the interfacial region of membranes due to increased water penetration. We performed fluorescence quenching experiments using the aqueous quencher Co2+ to explore this issue further and to examine the accessibility and relative location of membrane-bound NBD-melittin analogs in the presence and absence of cholesterol. The paramagnetic cobaltous ion is soluble in water and is an efficient quencher of NBD fluorescence (43
,58
60
). We excluded anionic membranes from cobalt quenching measurements because the results could be complicated due to specific interaction of cobaltous ion with the negatively charged lipid headgroups. Representative results for quenching of the NBD group of NBD-melittin analogs bound to DOPC membranes by Co2+ are shown in Fig. 7 as Stern-Volmer plots. The slope of such a plot (KSV) is related to the degree of exposure (accessibility) of the NBD group to the aqueous phase. In general, the higher the slope, the greater the degree of exposure, assuming that the difference in fluorescence lifetime is not large. The quenching parameters (KSV) obtained by analyzing the Stern-Volmer plots are shown in Table 4. Interestingly, incorporation of cholesterol in DOPC membranes leads to an apparent increase in the accessibility of the NBD group to Co2+ as evident from a significant increase in KSV (see Table 4). This suggests that the NBD group of membrane-bound NBD melittin analogs is more exposed, which could be due to increased water penetration in the membrane interfacial region. Interestingly, KSV values show that the Lys-7 NBD melittin is more exposed to aqueous phase when compared to N-ter NBD melittin analog irrespective of the presence or absence of cholesterol. However, interpretation of KSV values is complicated this way due to its intrinsic dependence on fluorescence lifetime (see Eq. 5). The bimolecular quenching constant (kq) is a more accurate measure of the degree of exposure because it takes into account the differences in fluorescence lifetime. The kq values, calculated using mean fluorescence lifetimes from Table 2 and Eq. 5, are shown in Table 4. It is encouraging to note that the kq values are also increased in the presence of cholesterol, which is in overall agreement with KSV values. This reinforces the idea that there is an increased water penetration in the interfacial region of membranes where the NBD group of NBD-melittin analogs is localized in the presence of cholesterol (also see Table 2).
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![]() | (8) |
1821 Å from the center of the bilayer in all membranes studied. This clearly suggests that Gly-1 and Lys-7 residues of melittin are located at the relatively shallow interfacial region of the membrane (near headgroups) in all cases. We have previously shown that the tryptophan residue (Trp-19) of native melittin is located at the deeper interfacial region (near the carbonyl group, 10.6 Å from the center of the bilayer) in DOPC membranes (9
11 Å from the center of the bilayer (not shown), which is similar to that found for the tryptophan residue of native melittin bound to DOPC membranes (see Table 5). This shows that NBD labeling does not affect the membrane penetration ability of the C-terminal region of melittin, and validates our NBD labeling approach to monitor the organization and dynamics of membrane-bound melittin.
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| DISCUSSION |
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In this article, we have monitored the organization and dynamics of NBD-melittin analogs bound to zwitterionic, anionic, and cholesterol-containing membranes to obtain information about the location and dynamics of the N-terminal region of membrane-bound melittin. This was achieved by covalently labeling the N-terminal end and Lys-7 of melittin with the environment-sensitive fluorescent NBD group, and monitoring the influence of negatively charged lipids and cholesterol on the organization and dynamics of these NBD-melittin analogs. Importantly, our results show that NBD labeling does not affect the structure and hemolytic activity of melittin (Figs. 2 and 3). Because NBD-melittin analogs are structurally and functionally similar to native melittin, these could be potentially useful in microscopic studies.
Fluorescence characteristics such as emission maximum, REES, polarization, lifetime, and quenching exhibit considerable differences between the NBD-melittin analogs in all the membrane systems studied. Interestingly, the NBD group of melittin labeled at its N-terminal end does not exhibit REES in zwitterionic and anionic membranes, whereas the NBD group of melittin labeled at Lys-7 exhibits considerable REES of
8 nm. This could be attributed to difference in membrane microenvironment experienced by the NBD groups in these analogs. Further, the polarity of NBD-melittin analogs is sensitive to the presence of negatively charged lipid and cholesterol, which is supported by time-resolved fluorescence measurements. In addition, cobalt quenching measurements show an increased accessibility of Lys-7 from the aqueous phase compared to the N-ter melittin analog. Based on the fluorescence properties of these two analogs, the NBD group in the N-ter NBD melittin analog appears to be located deeper in the membrane with respect to the Lys-7 analog. Importantly, analysis of membrane penetration depth shows that the NBD group of NBD-melittin analogs is located at a relatively shallow interfacial region in membranes of varying lipid composition.
The natural target membrane for the action of melittin is the erythrocyte membrane, which contains high amounts (
45 mol %) of cholesterol (76
). Recently, we have shown that cholesterol inhibits the lytic activity of melittin in its natural target membrane, i.e., the erythrocyte membrane (31
). This study suggested that, though pore formation could be the mode of action of melittin, membrane destabilization induced by melittin cannot be ruled out as the mechanism of action of melittin. In this context, our membrane penetration depth results of NBD-melittin analogs in zwitterionic, anionic, and cholesterol-containing membranes assume significance. Comparison of the membrane penetration depths of Trp-19, Gly-1, and Lys-7 residues of melittin in membranes of varying lipid composition (see Table 5) clearly suggests that melittin may adopt parallel (or pseudo-parallel) orientation with respect to the plane of lipid bilayer even in membranes containing negatively charged lipids or cholesterol. Our results are in agreement with previous reports that show that membrane-bound melittin orients parallel to the membrane plane (2
,29
,48
,68
,70
,72
,74
), and with the hypothesis that transmembrane orientation may not be an absolute requirement for the lytic activity of cationic, amphipathic peptides (77
). Importantly, it appears that the C-terminal region of melittin (where Trp-19 is present) is more sensitive to the presence of high amounts of cholesterol in membranes (see Table 5). To the best of our knowledge, this is the first report that gives an insight about the orientation of melittin in cholesterol-containing membranes. In summary, our results are relevant in understanding the orientation of melittin in its natural target membrane (i.e., erythrocyte membrane), which in turn could significantly contribute to the understanding of the mechanism of action of melittin.
| ACKNOWLEDGEMENTS |
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This work was supported by the Council of Scientific and Industrial Research, Government of India. H.R. thanks the Council of Scientific and Industrial Research, Government of India, for the award of a Research Associateship. A.C. is an Honorary Professor of the Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore (India).
| FOOTNOTES |
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Submitted on May 9, 2006; accepted for publication October 19, 2006.
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