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* Biotechnologisches Zentrum der TU Dresden, Dresden, Germany; and
Instituto de Ciencia Molecular, Universitat de València, Burjassot, Spain
Correspondence: Address reprint requests to Petra Schwille, Tatzberg 47-51, 1307 Dresden, Germany. Tel.: 49-351-4634-0328; E-mail: petra.schwille{at}biotec.tu-dresden.de.
| ABSTRACT |
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5) that is able to induce Bax-like pores in lipid bilayers. We report the decrease of line tension due to peptide binding both at the domain interface in phase-separated lipid bilayers and at the pore edge in atomic force microscopy film-rupture experiments. Such a decrease in line tension may be a general strategy of pore-forming peptides and proteins, as it affects the energetics of the pore and stabilizes the open state. | INTRODUCTION |
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Bax is soluble in the cytosol under normal conditions. In the presence of apoptotic stimuli, it translocates to the OMM and induces cytochrome c release. This process is induced by Bcl-2 members of the BH3-only subgroup, like Bid or PUMA (5
,6
). At the molecular level, Bax activation is characterized by its targeting to mitochondria, extensive conformational reorganization, and insertion into the OMM. Once there, Bax forms oligomers that induce the release of cytochrome c (7
11
).
The pore-forming activity that is attributed to Bax has been demonstrated in vitro. At nanomolar concentrations, this protein permeabilizes large unilamellar vesicles (LUVs) to cytochrome c and dextrans of high molecular weight (12
). It also produces pores in planar supported bilayers, as revealed in atomic force microscopy (AFM) studies (13
). Such an activity is affected by the presence of lipids with intrinsic monolayer curvature (14
). These facts, together with the properties of Bax-induced ion channels in planar lipid bilayers, led Basanez et al. to propose that Bax forms pores of mixed lipidic/proteic nature (15
).
The formation of protein/lipid pores with similar characteristics has also been attributed to other cell-death-related proteins. Examples are colicins (16
), actinoporins (17
,18
), and a number of antimicrobial peptides, like melittin (19
) and magainin (20
,21
). The pore model often proposed in these cases is an idealized toroidal arrangement with the rim of the pore being formed by both lipid and protein molecules. Such nonlamellar structures are characterized by a membrane edge at the pore wall. There, the two monolayers are in contact and form a continuous sheet with positive monolayer curvature in the plane perpendicular to the membrane and negative curvature in the membrane plane (18
,21
). In the context of this model, the pore-inducing polypeptides are thought to be embedded in the polar surface of the membrane with variable insertion into the hydrocarbon region. Similar pores form in pure lipid bilayers under stress conditions (22
). The energetics and dynamics of these lipid pores can be explained by theoretical models (23
,24
) in which the energy Er of a pore of radius r is given by
![]() | (1) |
Here, the first term represents the energy necessary to expand the rim of the pore,
being the line tension at the pore rim. The second term represents the work done by the membrane to open the pore, which is proportional to the pore area, with
being the membrane tension. This model predicts an intrinsically unstable pore, that tends to close when r <
/
, but expands indefinitely when r >
/
. Assuming that the same physics apply to polypeptide-induced toroidal pores, the action of these molecules should in some way affect the line-tension and membrane-tension terms, making the open-pore state energetically favored (25
).
At the molecular level, the pore activity of Bax can be connected to details of its structure. In its water-soluble form, Bax contains a hydrophobic hairpin of
-helices that is buried in the core of the protein (26
). By analogy with structurally related proteins, like the pore-forming domain of colicin E1 (27
,28
), this central hairpin is regarded as the pore-forming domain in Bax. In addition to this, as we have shown, peptides derived from each of the helices in the hydrophobic hairpin can independently reproduce important characteristics of the permeabilizing activity of the full-length parent protein (29
,30
). This allows us to investigate the physical basis of the pore-forming activity of Bax using reduced systems made of single membrane-active helical fragments.
The aim of this work was to measure the effect of a pore-forming peptide including helix 5 of Bax (Bax-
5) on the properties of lipid membranes. Confocal microscopy and AFM images show characteristic shape changes in domain-exhibiting supported bilayers in the presence of Bax-
5, which are interpreted as a reduction of the line tension at the boundaries of phases. Line tension reductions are also observed from punch-through AFM experiments. These findings support the toroidal pore model as the mechanism of action of Bax-
5.
| MATERIALS AND METHODS |
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5, sequence Ac-DGNFNWGRVVALFYFASKLVLKALSTKVPELIRT-NH2) and the homologous antiapoptotic protein Bcl-xL (Bcl-xL-
5, sequence Ac-RDGVNWGRIVAFFSFGGALSVESVDKEMQVLVSR-NH2) were chemically synthesized. The only difference between these peptides and the corresponding natural sequences Bax and Bcl-xL from mouse is the replacement of Cys residues by Ser, to avoid dimerization via disulfide bridges.
Solid-phase synthesis of the peptides was carried out as reported (30
) in a 433A peptide synthesizer (Applied Biosystems, Foster City, CA) using Fmoc chemistry and Tentagel S-RAM resin (Rapp Polymere, Tübingen, Germany; 0.24 mEq/g substitution) as a solid support. A sixfold molar excess of amino acids (Senn Chemicals, Dielsdorf, Switzerland) was used and multiple couplings were applied on difficult residues (31
). The peptides were acetylated at the N-terminus and amidated at the C-terminus. Deprotection and cleavage reactions were performed in a mixture of 70% trifluoroacetic acid, 20% dichloromethane, 5% water, 2.5% triisobutilsylaen, and 2.5% ethanedithiol (v/v), all from Merck. Purification of the peptides was carried out using a C18 preparative reverse-phase column (Merck, Darmstadt, Germany) by high-performance liquid chromatography, to a purity of
95%, and their identity was confirmed by mass spectrometry. Unless otherwise indicated, all reagents and solvents in the solid-phase synthesis were from Applied Biosystems.
All peptide concentrations were determined from ultraviolet spectra using a Jasco spectrophotometer (Jasco, Tokyo, Japan).
Preparation and size measurement of lipid vesicles
All lipids used were from Avanti Polar Lipids (Alabaster, AL). Large unilamellar vesicles (LUVs) were prepared as described previously (32
). Lipids were mixed at the desired molar composition in chloroform and vacuum-dried. Subsequently, they were resuspended to a concentration of 4 mg/mL in a calcein solution. After six cycles of freezing and thawing, they were passed 31 times through two stacked polycarbonate filters of 100-nm pore size, using a two-syringe extruder from Avestin (Ottawa, Canada). To remove external nonencapsulated dye, LUVs were washed in Sephadex-G50 (Sigma-Aldrich, St. Louis, MO) minicolumns, previously equilibrated in 140 mM NaCl, 20 mM Hepes, 1 mM EDTA, pH 7. The size of vesicles was measured by quasielastic light scattering with a laser particle sizer (Malvern Z-sizer 3, Malvern, UK).
Membrane permeability
The permeabilizing activity of the peptides was assayed by measuring the release of calcein from LUVs. All experiments were done at room temperature. A 96-well microtiter plate was filled with the desired amount of peptide and LUVs (final lipid concentration 25 mg/mL). The time course of calcein release was measured as the increase in fluorescence emission at 520 nm with the excitation set at 495 nm, using a fluorescence microplate reader (Fluostar, BMG, Munich, Germany). The percentage of peptide-induced calcein release (%R) was calculated by:
![]() | (2) |
Preparation of planar supported bilayers
Planar supported bilayers were prepared following the protocol described in Chiantia et al. (33
). Lipids were dissolved in chloroform at the desired molar concentration and 1,1'-dioctadecyl-3,3,3',3'-tetramethylindodicarbocyanine perchlorate (DiD-C18) (Molecular Probes, Eugene, OR) was added to the lipid mixtures at a 0.01% (mol/mol) concentration. The solvent was evaporated under nitrogen flux and then subjected to vacuum for 1 h. Lipid mixtures were rehydrated to a final concentration of 10 mg/mL in 3 mM KCl, 1.5 mM KH2PO4, 8 mM Na2HPO4, and 150 mM NaCl, pH 7.2. The suspension was then vortexed and bath-sonicated at 60° until small unilamellar vesicles were obtained. A small aliquot of the small-unilamellar-vesicle suspension (10 µl) was diluted in 140 µl of 3 mM CaCl2, 150 mM NaCl, 10 mM Hepes, and 3 mM NaN3, pH 7.4, and then put in contact with freshly cleaved mica substrate, previously glued to a glass coverslip. The mixture was incubated at 40°C for 2 min, and then at 65°C for 10 min. The samples were rinsed several times with 150 mM NaCl, 10 mM Hepes, and 3 mM NaN3, pH 7.4, to remove the nonfused vesicles, and then were allowed to cool down and equilibrate for 1 h. The lipid content per sample was
2 nmol, calculated assuming an average area/ lipid molecule of 0.6 nm2 (34
).
Confocal microscopy
Confocal fluorescence microscopy was performed on a LSM Meta 510 instrument (Carl Zeiss, Jena, Germany). Confocal images were taken using the excitation light of an He-Ne laser at 633 nm, which was reflected by a dichroic mirror (HTF 488/633) and focused through a Zeiss C-Apochromat 40x, NA 1.2, water-immersion objective onto the sample. The fluorescence signal was collected by the same objective, passed through a 680/30 nm bandpass filter, and finally detected by a photomultiplier. Confocal geometry was ensured by a 90-µm pinhole in front of the photomultiplier.
AFM measurements
AFM measurements were performed using a NanoWizard system (JPK Instruments, Berlin, Germany) mounted on the same LSM Meta 510 setup used for microscopy. Contact-mode topographic images were taken in the constant-deflection mode, using V-shaped silicon nitride cantilevers (Veeco, Santa Barbara, CA) with a typical spring constant of 0.08 N m1. The force applied on the sample was maintained at the lowest possible value by continuously adjusting the set point during imaging. The scan rate was set between 1 and 2 Hz. Height and deflection were collected simultaneously in both trace and retrace directions. Images were line-fitted as required. Occasionally, isolated scan lines were removed.
For force measurements, the calibration of sensitivity, resonance frequency, and effective spring constant (via the thermal noise method) (35
) of the cantilever were performed before and after each experiment. The total z-piezo displacement was always 300 nm and the indenting speed was set to 800 nm/s for the approach and 200 nm/s for the retraction. All experiments were carried out at different positions of the bilayer under the same conditions, so that the effect of speed on the breakthrough force could be neglected. The approach curves were analyzed using the free software Punias (P. Carl and P. Dalhaimer, 2004) and the threshold yield was measured for 150400 different curves in each sample and plotted in histograms as in Garcia-Manyes et al. (36
).
Continuum nucleation model for the rupture of thin films
Based on the continuum nucleation theory, Butt et al. described a theoretical model that relates the yield force of film rupture to microscopic properties of the bilayer (37
). In their model, the rupture of a fluid film is considered an activated process, with an associated energy barrier that follows the Arrhenius law:
![]() | (3) |
U = Uf Ui is the energy difference of the film before (Ui) and after (Uf) rupture. The energy of the system at Ui increases with the applied force due to the pressure produced by the tip on the bilayer.
The differential equation for the kinetics of film rupture is dN = kNdt, where N is the number of times that the tip is on top of an intact film. Dividing by the total number of times that the tip tries to puncture the bilayer N0, we change to probabilities:
![]() | (4) |
![]() | (5) |
tS, the film will not break and P = 1.
To express the probability of rupture in terms of force instead of time, some considerations must be taken. The force is zero until the tip contacts the film. Then, since the tip moves toward the sample with a constant speed v, after contact the force is F = Kvt, where K is the spring constant of the cantilever. As a result,
![]() | (6) |
According to the continuum nucleation model (see Eq. 1), and for a system composed by a supported bilayer pressed by an AFM tip of radius R, the energy of a pore of radius rh is given by
![]() | (7) |
The linear factor depends on the line tension
at the generated membrane edge, whereas the surface factor depends on a term S, called spreading pressure, and on the elastic energy of the confined film. In our system, the spreading pressure includes the interactions between the different interfaces involved in the punch-through process (tip, liquid solution, lipid bilayer, and solid support).
The elastic energy is stored in the film upon compression by the AFM tip, and it is released when a pore of radius rh forms. The contribution of the elastic energy is calculated using the elastic foundation model, where the indentation of the AFM tip of radius R at a radial position r is given by
![]() | (8) |
with a being the peripheral radius of the contact area. The elastic force equation,
where E is the Young modulus, Ar is the area through which the force is applied, h is the thickness of the film, and
is the indentation, can be integrated over the radial position r. It relates the maximal indentation in the center
0 and the applied force F by
![]() | (9) |
Then, the elastic energy Ue stored in a small section of the film of radius rh can be expressed as a function of applied force:
![]() | (10) |
Equation 7, for the energy of a hole of radius rh, shows a maximum at a critical radius:
![]() | (11) |
Then, the maximal energy, which is the activation energy, is given by
![]() | (12) |
Substitution of Eq. 12 in Eq. 6 leads to an expression for the probability P(F) of measuring a certain threshold yield F of film rupture, which is described by
![]() | (13) |
is the loading rate, kB is the Boltzmann constant, T is the temperature, and K is the spring constant of the cantilever (38
![]() | (14) |
In a punch-through experiment, the unknown parameters in Eq. 14 are the frequency factor A, the line tension
at the pore edge, and the spreading pressure S. They can be calculated by fitting this equation to the measured-yield histograms.
| RESULTS AND DISCUSSION |
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5 affects the morphology of lipid domains in supported bilayers
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5 (control conditions, Fig. 1, top left) indicates the existence of line tension between the two phases. This appears to be due to the chemical inhomogeneity and the different thickness at the boundary of the coexisting domains, which leads to lipid tilt and curvature stress (40
When Bax-
5 is added at a lipid/protein (L/P) molar ratio of 109, a dramatic change in the morphology of the Lo domains is observed: they become more irregular and larger (Fig. 1, time series). The kinetics of the process is fast: It starts immediately after adding the peptide, and equilibrium is reached within 10 min. The analysis of the lipid-supported bilayers under similar conditions by scanning AFM allows imaging at a higher resolution. In Fig. 2 A, pure DOPC/SM/Chol (1:1:0.67) membranes in equilibrium exhibit numerous round Lo domains, with diameters in the range 0.53 µm. The ordered domains are thicker than the surrounding disordered phase, with a height difference between the two phases of
0.7 nm. As shown above, in the presence of Bax-
5 at L/P = 109 (Fig. 2 C), the domains become irregular. Overall, there are fewer domains and they are bigger, though their diameter is difficult to estimate because of the complex shape.
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5 binding because of its amphipathic nature (43
As a control experiment, we performed similar measurements in the presence of the peptide Bcl-xL-
5. This peptide is derived from helix 5 of protein Bcl-xL, an antiapoptotic member of the Bcl-2 family. Despite their opposing activities, Bcl-xL and Bax show similar soluble structures, and their helix 5 fragments show a high level of sequence homology (26
,46
,47
) (see details of the sequences in Materials and Methods). Although there are small differences between the two peptides, Bcl-xL-
5 shows a barely detectable membrane poration activity at neutral pH (A. J. García-Sáez and J. Salgado, unpublished results), which contrasts with the high activity of Bax-
5. Therefore, the Bcl-xL-
5 peptide constitutes a good control for the Bax-
5 experiments. After treating domain exhibiting bilayers with Bcl-xL-
5, no significant changes in the domain shape, size, or thickness were observed in confocal microscopy or AFM images for L/P molar ratios up to 14 and 1 h incubation (Fig. 2 B). These results demonstrate that the effects observed in the presence of Bax-
5 are due to specific peptide/lipid interactions arising from the physicochemical properties coded in the sequence of the peptide.
Bax-
5 decreases the force needed to rupture the membrane in a two-step process
To investigate whether Bax-
5 had an effect on the mechanical properties of the membrane, we collected a statistically significant number of force-distance curves in the Ld and Lo phases at several peptide concentrations, and measured the force required for the AFM tip to punch through the membrane. In this kind of measurement, the tip of the cantilever is moved toward the sample. The force-distance curves represent the deflection of the cantilever as a function of the position of the tip. Fig. 3 shows a typical force curve obtained when measuring on supported lipid bilayers. When a certain yield force is exceeded, a jump is often observed, which is interpreted as a penetration of the AFM tip through the bilayer (37
). A distribution of punch-through values is obtained and is plotted in a histogram.
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8 nN, higher than that in the Ld domains (
5 nN). This is in agreement with the physical properties of the two bilayer phases, with the ordered Lo phase being less fluid and more compressed (as previously shown in Chiantia et al. (39
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5 peptide (L/P = 109 and L/P = 54), where morphological changes are clearly observed (see Figs. 1 and 2), the forces required to punch through the membranes become similar for the two phases (Fig. 4, B and C). In this concentration range, the punch-through force increases with the peptide concentration. However, past a threshold L/P value close to 27, the force required to make a hole in any of the phases decreases drastically to around 1 nN, indicating changes in the mechanical properties of the bilayer (Fig. 4, D and E). These results show two states in the Bax-
5 interaction with the lipid bilayer, depending on the peptide concentration, in agreement with the behavior observed for membrane permeability (30
5 is heterogeneously distributed in the membrane.
When we measured the yield forces to punch through the Lo and Ld phases in the presence of the control peptide Bcl-xL-
5 up to L/P = 14, the distributions of forces remained practically unchanged compared to pure bilayers (Fig. 5). At the highest concentrations measured (Fig. 5 C), only a slight increase in the punch-through force was detected for the Ld phase. However, and in contrast to the results obtained for Bax-
5, neither reduction of the piercing force nor two-state behavior could be measured for Bcl-xL-
5. The membrane was stable under the measuring conditions in all experiments, as confirmed by confocal microscopy and/or AFM imaging.
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5 decreases the line tension at the rim of the pore
5 concentrations (Fig. 6). In the absence of peptide, the average force to disrupt the bilayer is
4 nN, thus similar to that corresponding to the Ld phase in raftlike bilayers, and in agreement with the fluid state of the membrane (Fig. 6 A). In line with the results just discussed, the presence of the peptide above a certain concentration induces a drop in the yield force needed for punch-through, as compared to pure POPC bilayers. In this case, a two-step behavior is also observed, but the threshold L/P for the characteristic decrease of force is much lower than in DOPC/SM/Chol (1:1:0.67) bilayers, being
5000 (Fig. 6 B). This is consistent with the permeabilizing activity measured in LUVs, which is notably higher in PC vesicles than in LUVs with raftlike composition (Fig. 7).
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0.15 N/m. We started the fitting procedure by choosing a certain value of frequency factor, A (37
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= 6.0 ± 0.3 pN, is in line with results published previously for DOPC bilayers (
3.9 and
6.9 pN) (1
5 reduces the line tension at the rim of the pore by
30% (Table 1), similar to the effect observed in the presence of detergents (43
Interpretation in the framework of the pore activity
Similar to antimicrobial peptides, like melittin and magainin, the active Bax-
5 fragment is an amphipathic
-helix with net positive charge provided by lysine and arginine residues. For this type of molecule, it is generally proposed that binding occurs at the bilayer interface between the headgroup and the hydrophobic region (21
,30
,45
,48
). Such a binding mode would insert additional area into the polar region and provoke deformations and stress in the bilayer. According to the two-state model proposed by Huang et al. (25
), the pore state occurs after a threshold concentration of the peptide is bound to the membrane, and the built-up stress is sufficient to allow formation of a pore. In the open pore, a reduced line tension due to peptide binding may change the energetic balance (see Eq. 1) and increase the stability of the pore state.
Our results show that the pore-forming peptide Bax-
5 reduces the line tension at interfaces with high curvature stress, as in domain boundaries and mechanically punched holes. The concentration-dependent two states displayed by the Bax-
5/membrane interaction in punch-through experiments is in agreement with the cooperative pore-forming activity of the same peptide measured by the release of contents from LUVs (Fig. 7). Indeed, for a raftlike lipid composition of LUVs, 50% of activity is reached at an L/P = 17, which is in the same order of magnitude as the L/P values necessary for the step reduction of punch-through forces. This behavior agrees with Huang's two-state model (49
). At low L/P ratios Bax-
5 binds to the membrane, most probably at the level of the interface (Fig. 8, 2). This would introduce additional area into the lipid headgroup region, thus increasing the lateral pressure and the force required for the AFM tip to punch through the membrane. Since the Ld phase is less packed than the Lo phase, more peptide molecules may bind to it (50
), which would explain the stronger increase in the observed yield force for Ld. The effect at high concentrations corresponds to the state of pore formation (Fig. 8, 3). In these conditions, Bax-
5 reduces the energy required for punching through, probably by inducing holes in the membrane, which may facilitate the penetration of the tip. This makes sense, since the diameter of the pores induced by Bax-
5 is estimated to be
5 nm (29
), whereas the diameter of the tip is in the order of 50 nm. Fitting Eq. 14 to experimental data shows that Bax-
5 produces a reduction of the line tension under conditions corresponding to state 3 in Fig. 8 (above the threshold concentration). This effect is an important factor for the stability of the peptide-induced pore. Such a reduction of line tension reflects a release of curvature stress at the membrane edge in the pore wall (Fig. 8, 3), in a way analogous to the pore-stabilizing curvature effects of detergents (43
). This is expected to be a general mechanism for pore stabilization by polypeptides similar to Bax-
5, including the complete Bax protein.
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5 in DOPC/SM/Chol (1:1:0.67) (Fig. 1) is in good agreement with the time dependence of the peptide activity observed in experiments of content release (29| CONCLUDING REMARKS |
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5 affects the morphological organization of domain-exhibiting membranes, as observed by both confocal microscopy and scanning AFM. The peptide reduced the line tension between the two coexisting phases, and therefore, the liquid-ordered domains lost their circular shape and generally increased in size. In addition, force spectroscopy AFM measurements showed that the force needed to punch through lipid bilayers in the presence of Bax-
5 decreased, in agreement with the two-state model of pore formation. To our knowledge, this is the first time force spectroscopy AFM has been used to investigate the molecular mechanism of pore formation in lipid bilayers. Fitting these results to a model based on the continuum nucleation theory yielded a reduction of
30% in the pore line tension in the presence of the peptide. As Bax-
5 contains the main active fragment of Bax and forms pores with similar properties to the pores of the full-length protein, we propose that a similar effect on the line tension is part of the mechanism of pore formation by the parent Bax. Moreover, because most polypeptides forming toroidal pores in membranes share basic physicochemical properties, we propose that they act via reduction of membrane line tension, as is shown here for Bax-
5. | ACKNOWLEDGEMENTS |
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This work was supported by the Federation of European Biochemical Societies (Short-term fellowship to A.J.G.S.) and grants from the Spanish Ministerio de Educación y Ciencia (CTQ2004-03444) and German Deutsche Forschungsgemeinschaft (SCHW716/4-1) and the Europäische Fonds für Regionale Entwicklung (4212/04-02).
| FOOTNOTES |
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Submitted on November 2, 2006; accepted for publication February 21, 2007.
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