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Biophys J, March 2000, p. 1376-1389, Vol. 78, No. 3
and
§
*Department of Biophysics, Institute of Molecular Biology,
Jagiellonian University, Kraków, Poland;
Department
of Molecular Science, Research Center, Taisho Pharmaceutical Co.,
Saitama 330, Japan;
Department of Biological Science,
Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan;
and §Kusumi Membrane Organizer Project, ERATO, Japan
Science and Technology Corporation, Nagoya 460-0012, Japan
A molecular dynamics (MD) simulation of a fully hydrated,
liquid-crystalline dimyristoylphosphatidylcholine (DMPC)-Chol bilayer membrane containing ~22 mol% Chol was carried out for 4.3 ns. The
bilayer reached thermal equilibrium after 2.3 ns of MD simulation. A
2.0-ns trajectory generated during 2.3-4.3 ns of MD simulation was
used for analyses to determine the effects of Chol on the membrane/water interfacial region. In this region, 70% of Chol molecules are linked to DMPC molecules via short-distance interactions, where the Chol hydroxyl group (OH-Chol) is 1) charge paired to methyl
groups of the DMPC choline moiety (~34%), via the hydroxyl oxygen
atom (Och); 2) water bridged to carbonyl (~19%) and nonester phosphate (~14%) oxygen atoms, via both Och and the hydroxyl
hydrogen atom (Hch); and 3) directly hydrogen (H) bonded to carbonyl
(~11%) and nonester phosphate (~5%) oxygen atoms, via Hch
(~17% of DMPC-Chol links are multiple). DMPC's
-chain carbonyl
oxygen atom is involved in 44% of water bridges and 51% of direct H
bonds formed between DMPC and Chol. On average, a Chol molecule forms
0.9 links with DMPC molecules, while a DMPC molecule forms 2.2 and 0.3 links with DMPC and Chol molecules, respectively. OH-Chol makes
hydrogen bonds with 1.1 water molecules, preferentially via Hch. The
average number of water molecules H bonded to the DMPC headgroup is
increased by 7% in the presence of Chol. These results indicate that
inclusion of Chol decreases interlipid links and increases hydration in the polar region of the membrane.
Biophys J, March 2000, p. 1376-1389, Vol. 78, No. 3
© 2000 by the Biophysical Society 0006-3495/00/03/1376/14 $2.00
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