BIOPHYSICAL THEORY AND MODELING:

Sergei Izrailev, Antony R. Crofts, Edward A. Berry, and Klaus Schulten

Steered Molecular Dynamics Simulation of the Rieske Subunit Motion in the Cytochrome bc₁ Complex
Biophys. J. 1999 77: 1753-1768. [Abstract] [Full Text] [PDF]  

Michael Feig and B. Montgomery Pettitt

Sodium and Chlorine Ions as Part of the DNA Solvation Shell
Biophys. J. 1999 77: 1769-1781. [Abstract] [Full Text] [PDF]  

Srikanta Sen and Lennart Nilsson

Structure, Interaction, Dynamics and Solvent Effects on the DNA-EcoRI complex in Aqueous Solution from Molecular Dynamics Simulation
Biophys. J. 1999 77: 1782-1800. [Abstract] [Full Text] [PDF]  

Srikanta Sen and Lennart Nilsson

Free Energy Calculations and Molecular Dynamics Simulations of Wild-Type and Variants of the DNA-EcoRI Complex
Biophys. J. 1999 77: 1801-1810. [Abstract] [Full Text] [PDF]  

Marten Postma, Johannes Oberwinkler, and Doekele G. Stavenga

Does Ca²⁺ Reach Millimolar Concentrations after Single Photon Absorption in Drosophila Photoreceptor Microvilli?
Biophys. J. 1999 77: 1811-1823. [Abstract] [Full Text] [PDF]  

David K. Lubensky and David R. Nelson

Driven Polymer Translocation Through a Narrow Pore
Biophys. J. 1999 77: 1824-1838. [Abstract] [Full Text] [PDF]  

C. Scharnagl, R. Raupp-Kossmann, and S. F. Fischer

Molecular Basis for pH Sensitivity and Proton Transfer in Green Fluorescent Protein: Protonation and Conformational Substates from Electrostatic Calculations
Biophys. J. 1999 77: 1839-1857. [Abstract] [Full Text] [PDF]  

Pierre-Edouard Sottas, Eric Larquet, Andrzej Stasiak, and Jacques Dubochet

Brownian Dynamics Simulation of DNA Condensation
Biophys. J. 1999 77: 1858-1870. [Abstract] [Full Text] [PDF]  

John J. Rice, M. Saleet Jafri, and Raimond L. Winslow

Modeling Gain and Gradedness of Ca²⁺ Release in the Functional Unit of the Cardiac Diadic Space
Biophys. J. 1999 77: 1871-1884. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Yasutaka Kurata, Ryoichi Sato, Ichiro Hisatome, and Sunao Imanishi

Mechanisms of Cation Permeation in Cardiac Sodium Channel: Description by Dynamic Pore Model
Biophys. J. 1999 77: 1885-1904. [Abstract] [Full Text] [PDF]  

Birgit Hirschberg, James Maylie, John P. Adelman, and Neil V. Marrion

Gating Properties of Single SK Channels in Hippocampal CA1 Pyramidal Neurons
Biophys. J. 1999 77: 1905-1913. [Abstract] [Full Text] [PDF]  

Denis B. Tikhonov, Boris S. Zhorov, and Lev G. Magazanik

Intersegment Hydrogen Bonds as Possible Structural Determinants of the N/Q/R Site in Glutamate Receptors
Biophys. J. 1999 77: 1914-1926. [Abstract] [Full Text] [PDF]  

Anthony R. Jude, Denise V. Greathouse, Marvin C. Leister, and Roger E. Koeppe, II

Steric Interactions of Valines 1, 5, and 7 in [Valine 5, D-Alanine 8] Gramicidin A Channels
Biophys. J. 1999 77: 1927-1935. [Abstract] [Full Text] [PDF]  

I. I. Serysheva, M. Schatz, M. van Heel, W. Chiu, and S. L. Hamilton

Structure of the Skeletal Muscle Calcium Release Channel Activated with Ca²⁺ and AMP-PCP
Biophys. J. 1999 77: 1936-1944. [Abstract] [Full Text] [PDF]  

Anatoly Shcherbatko, Fumihito Ono, Gail Mandel, and Paul Brehm

Voltage-Dependent Sodium Channel Function Is Regulated Through Membrane Mechanics
Biophys. J. 1999 77: 1945-1959. [Abstract] [Full Text] [PDF]  

Kenjiro Yoshimura, Ann Batiza, Matt Schroeder, Paul Blount, and Ching Kung

Hydrophilicity of a Single Residue within MscL Correlates with Increased Channel Mechanosensitivity
Biophys. J. 1999 77: 1960-1972. [Abstract] [Full Text] [PDF]  

Igor I. Pottosin, Oxana R. Dobrovinskaya, and Jesus Muñiz

Cooperative Block of the Plant Endomembrane Ion Channel by Ruthenium Red
Biophys. J. 1999 77: 1973-1979. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Drazen Raucher and Michael P. Sheetz

Characteristics of a Membrane Reservoir Buffering Membrane Tension
Biophys. J. 1999 77: 1992-2002. [Abstract] [Full Text] [PDF]  

Antonio Ortiz, J. Antoinette Killian, Arie J. Verkleij, and Jan Wilschut

Membrane Fusion and the Lamellar-to-Inverted-Hexagonal Phase Transition in Cardiolipin Vesicle Systems Induced by Divalent Cations
Biophys. J. 1999 77: 2003-2014. [Abstract] [Full Text] [PDF]  

Shou Furuike, Victor G. Levadny, Shu Jie Li, and Masahito Yamazaki

Low pH Induces an Interdigitated Gel to Bilayer Gel Phase Transition in Dihexadecylphosphatidylcholine Membrane
Biophys. J. 1999 77: 2015-2023. [Abstract] [Full Text] [PDF]  

Dirk K. Hincha, Ann E. Oliver, and John H. Crowe

Lipid Composition Determines the Effects of Arbutin on the Stability of Membranes
Biophys. J. 1999 77: 2024-2034. [Abstract] [Full Text] [PDF]  

Alexandr Chanturiya, Eugenia Leikina, Joshua Zimmerberg, and Leonid V. Chernomordik

Short-Chain Alcohols Promote an Early Stage of Membrane Hemifusion
Biophys. J. 1999 77: 2035-2045. [Abstract] [Full Text] [PDF]  

Sreelatha Channareddy and Nathan Janes

Direct Determination of Hydration in the Interdigitated and Ripple Phases of Dihexadecylphosphatidylcholine: Hydration of a Hydrophobic Cavity at the Membrane/Water Interface
Biophys. J. 1999 77: 2046-2050. [Abstract] [Full Text] [PDF]  

Bohdana M. Discher, William R. Schief, Viola Vogel, and Stephen B. Hall

Phase Separation in Monolayers of Pulmonary Surfactant Phospholipids at the Air-Water Interface: Composition and Structure
Biophys. J. 1999 77: 2051-2061. [Abstract] [Full Text] [PDF]  

John F. Nagle, Yufeng Liu, Stephanie Tristram-Nagle, Richard M. Epand, and Ruth E. Stark

Re-analysis of Magic Angle Spinning Nuclear Magnetic Resonance Determination of Interlamellar Waters in Lipid Bilayer Dispersions
Biophys. J. 1999 77: 2062-2065. [Abstract] [Full Text] [PDF]  

Rainer Hirn, Bernhard Schuster, Uwe B. Sleytr, and Thomas M. Bayerl

The Effect of S-Layer Protein Adsorption and Crystallization on the Collective Motion of a Planar Lipid Bilayer Studied by Dynamic Light Scattering
Biophys. J. 1999 77: 2066-2074. [Abstract] [Full Text] [PDF]  

Alexander M. Smondyrev and Max L. Berkowitz

Structure of Dipalmitoylphosphatidylcholine/Cholesterol Bilayer at Low and High Cholesterol Concentrations: Molecular Dynamics Simulation
Biophys. J. 1999 77: 2075-2089. [Abstract] [Full Text] [PDF]  

L. A. Bagatolli and E. Gratton

Two-Photon Fluorescence Microscopy Observation of Shape Changes at the Phase Transition in Phospholipid Giant Unilamellar Vesicles
Biophys. J. 1999 77: 2090-2101. [Abstract] [Full Text] [PDF]  

Kimmo Mattila, Rudolf Kinder, and Burkhard Bechinger

The Alignment of a Voltage-Sensing Peptide in Dodecylphosphocholine Micelles and in Oriented Lipid Bilayers by Nuclear Magnetic Resonance and Molecular Modeling
Biophys. J. 1999 77: 2102-2113. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Hideyuki Ishida, Chokoh Genka, Yuki Hirota, Hiroe Nakazawa, and William H. Barry

Formation of Planar and Spiral Ca²⁺ Waves in Isolated Cardiac Myocytes
Biophys. J. 1999 77: 2114-2122. [Abstract] [Full Text] [PDF]  

Chiu Shuen Hui

Calcium Release in Frog Cut Twitch Fibers Exposed to Different Ionic Environments under Voltage Clamp
Biophys. J. 1999 77: 2123-2136. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Idelisa Ayala, Sunyoung Kim, and Bridgette A. Barry

A Difference Fourier Transform Infrared Study of Tyrosyl Radical Z· Decay in Photosystem II
Biophys. J. 1999 77: 2137-2144. [Abstract] [Full Text] [PDF]  

Jun Sasaki and John L. Spudich

Proton Circulation During the Photocycle of Sensory Rhodopsin II
Biophys. J. 1999 77: 2145-2152. [Abstract] [Full Text] [PDF]  

Kelvin Chu, Joel Berendzen, Robert M. Sweet, and Ilme Schlichting

Crystal Structures of Myoglobin-Ligand Complexes at Near-Atomic Resolution
Biophys. J. 1999 77: 2153-2174. [Abstract] [Full Text] [PDF]  

Hiromasa Yagi, Kaeko Tozawa, Nobuaki Sekino, Tomoyuki Iwabuchi, Masasuke Yoshida, and Hideo Akutsu

Functional Conformation Changes in the TF₁-ATPase  Subunit Probed by 12 Tyrosine Residues
Biophys. J. 1999 77: 2175-2183. [Abstract] [Full Text] [PDF]  

Roy M. Daniel, John L. Finney, Valérie Réat, Rachel Dunn, Michel Ferrand, and Jeremy C. Smith

Enzyme Dynamics and Activity: Time-Scale Dependence of Dynamical Transitions in Glutamate Dehydrogenase Solution
Biophys. J. 1999 77: 2184-2190. [Abstract] [Full Text] [PDF]  

Gulshat T. Ibragimova and Rebecca C. Wade

Stability of the -Sheet of the WW Domain: A Molecular Dynamics Simulation Study
Biophys. J. 1999 77: 2191-2198. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Melanie Hohenadl, Tobias Storz, Hulda Kirpal, Klaus Kroy, and Rudolf Merkel

Desmin Filaments Studied by Quasi-Elastic Light Scattering
Biophys. J. 1999 77: 2199-2209. [Abstract] [Full Text] [PDF]  

Philip Gribbon, Boon C. Heng, and Timothy E. Hardingham

The Molecular Basis of the Solution Properties of Hyaluronan Investigated by Confocal Fluorescence Recovery After Photobleaching
Biophys. J. 1999 77: 2210-2216. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Helmut J. Koester, Dagmar Baur, Rainer Uhl, and Stefan W. Hell

Ca²⁺ Fluorescence Imaging with Pico- and Femtosecond Two-Photon Excitation: Signal and Photodamage
Biophys. J. 1999 77: 2226-2236. [Abstract] [Full Text] [PDF]  

Rikard Owenius, Maria Österlund, Mikael Lindgren, Magdalena Svensson, Ole H. Olsen, Egon Persson, Per-Ola Freskgård, and Uno Carlsson

Properties of Spin and Fluorescent Labels at a Receptor-Ligand Interface
Biophys. J. 1999 77: 2237-2250. [Abstract] [Full Text] [PDF]  

Petra Schwille, Ulrich Haupts, Sudipta Maiti, and Watt W. Webb

Molecular Dynamics in Living Cells Observed by Fluorescence Correlation Spectroscopy with One- and Two-Photon Excitation
Biophys. J. 1999 77: 2251-2265. [Abstract] [Full Text] [PDF]  

Susan E. Sund, Joel A. Swanson, and Daniel Axelrod

Cell Membrane Orientation Visualized by Polarized Total Internal Reflection Fluorescence
Biophys. J. 1999 77: 2266-2283. [Abstract] [Full Text] [PDF]  

Martin Guthold, Xingshu Zhu, Claudio Rivetti, Guoliang Yang, Neil H. Thomson, Sandor Kasas, Helen G. Hansma, Bettye Smith, Paul K. Hansma, and Carlos Bustamante

Direct Observation of One-Dimensional Diffusion and Transcription by Escherichia coli RNA Polymerase
Biophys. J. 1999 77: 2284-2294. [Abstract] [Full Text] [PDF]  

S. John T. van Noort, Kees O. van der Werf, Bart G. de Grooth, and Jan Greve

High Speed Atomic Force Microscopy of Biomolecules by Image Tracking
Biophys. J. 1999 77: 2295-2303. [Abstract] [Full Text] [PDF]  

Magali Deleu, Michel Paquot, Philippe Jacques, Philippe Thonart, Yasmine Adriaensen, and Yves F. Dufrêne

Nanometer Scale Organization of Mixed Surfactin/Phosphatidylcholine Monolayers
Biophys. J. 1999 77: 2304-2310. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Annette Kloboucek, Almuth Behrisch, Jan Faix, and Erich Sackmann

Adhesion-Induced Receptor Segregation and Adhesion Plaque Formation: A Model Membrane Study
Biophys. J. 1999 77: 2311-2328. [Abstract] [Full Text] [PDF]  

BIOENERGETICS:

Suming Hua, Daniele Fabris, and Giuseppe Inesi

Characterization of Calcium, Nucleotide, Phosphate, and Vanadate Bound States by Derivatization of Sarcoplasmic Reticulum ATPase with ThioGlo1
Biophys. J. 1999 77: 2217-2225. [Abstract] [Full Text] [PDF]  

ELECTROPHYSIOLOGY:

W. Baumgartner, L. Islas, and F. J. Sigworth

Two-Microelectrode Voltage Clamp of Xenopus Oocytes: Voltage Errors and Compensation for Local Current Flow
Biophys. J. 1999 77: 1980-1991. [Abstract] [Full Text] [PDF]  

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