BIOPHYSICAL THEORY AND MODELING:

Pang-Chih Jiang, Tsyr-Yan Yu, Wann-Cherng Perng, and Lian-Pin Hwang

Pore-to-Pore Hopping Model for the Interpretation of the Pulsed Gradient Spin Echo Attenuation of Water Diffusion in Cell Suspension Systems
Biophys. J. 2001 80: 2493-2504. [Abstract] [Full Text] [PDF]  

H. J. Kreuzer, S. H. Payne, and L. Livadaru

Stretching a Macromolecule in an Atomic Force Microscope: Statistical Mechanical Analysis
Biophys. J. 2001 80: 2505-2514. [Abstract] [Full Text] [PDF]  

Frank Gibbons, Jean-François Chauwin, Marcelo Despósito, and Jorge V. José

A Dynamical Model of Kinesin-Microtubule Motility Assays
Biophys. J. 2001 80: 2515-2526. [Abstract] [Full Text] [PDF]  

Igor V. Ouporov, Harvey R. Knull, Amanda Huber, and Kathryn A. Thomasson

Brownian Dynamics Simulations of Aldolase Binding Glyceraldehyde 3-Phosphate Dehydrogenase and the Possibility of Substrate Channeling
Biophys. J. 2001 80: 2527-2535. [Abstract] [Full Text] [PDF]  

Amit Kessel, Boaz Musafia, and Nir Ben-Tal

Continuum Solvent Model Studies of the Interactions of an Anticonvulsant Drug with a Lipid Bilayer
Biophys. J. 2001 80: 2536-2545. [Abstract] [Full Text] [PDF]  

Jed W. Pitera, Michael Falta, and Wilfred F. van Gunsteren

Dielectric Properties of Proteins from Simulation: The Effects of Solvent, Ligands, pH, and Temperature
Biophys. J. 2001 80: 2546-2555. [Abstract] [Full Text] [PDF]  

M. Falconi, M. E. Stroppolo, P. Cioni, G. Strambini, A. Sergi, M. Ferrario, and A. Desideri

Dynamics-Function Correlation in Cu, Zn Superoxide Dismutase: A Spectroscopic and Molecular Dynamics Simulation Study
Biophys. J. 2001 80: 2556-2567. [Abstract] [Full Text] [PDF]  

Fang Fang and Igal Szleifer

Kinetics and Thermodynamics of Protein Adsorption: A Generalized Molecular Theoretical Approach
Biophys. J. 2001 80: 2568-2589. [Abstract] [Full Text] [PDF]  

Zongchao Jia, Vitali Petrounevitch, Andrew Wong, Tudor Moldoveanu, Peter L. Davies, John S. Elce, and Jacques S. Beckmann

Mutations in Calpain 3 Associated with Limb Girdle Muscular Dystrophy: Analysis by Molecular Modeling and by Mutation in m-Calpain
Biophys. J. 2001 80: 2590-2596. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Cicely X. Gu, Peter F. Juranka, and Catherine E. Morris

Stretch-Activation and Stretch-Inactivation of Shaker-IR, a Voltage-Gated K⁺ Channel
Biophys. J. 2001 80: 2678-2693. [Abstract] [Full Text] [PDF]  

Andrew Nelson

Conducting Gramicidin Channel Activity in Phospholipid Monolayers
Biophys. J. 2001 80: 2694-2703. [Abstract] [Full Text] [PDF]  

Andrey Loboda, Alexey Melishchuk, and Clay Armstrong

Dilated and Defunct K Channels in the Absence of K⁺
Biophys. J. 2001 80: 2704-2714. [Abstract] [Full Text] [PDF]  

Marco G. Casarotto, Daniel Green, Suzi M. Pace, Suzanne M. Curtis, and Angela F. Dulhunty

Structural Determinants for Activation or Inhibition of Ryanodine Receptors by Basic Residues in the Dihydropyridine Receptor II-III Loop
Biophys. J. 2001 80: 2715-2726. [Abstract] [Full Text] [PDF]  

Elena Saftenku, Alan J. Williams, and Rebecca Sitsapesan

Markovian Models of Low and High Activity Levels of Cardiac Ryanodine Receptors
Biophys. J. 2001 80: 2727-2741. [Abstract] [Full Text] [PDF]  

Antonio Guia, Michael D. Stern, Edward G. Lakatta, and Ira R. Josephson

Ion Concentration-Dependence of Rat Cardiac Unitary L-Type Calcium Channel Conductance
Biophys. J. 2001 80: 2742-2750. [Abstract] [Full Text] [PDF]  

MEMBRANES:

D. Valdez, J -Y. Le Huérou, M. Gindre, W. Urbach, and M. Waks

Hydration and Protein Folding in Water and in Reverse Micelles: Compressibility and Volume Changes
Biophys. J. 2001 80: 2751-2760. [Abstract] [Full Text] [PDF]  

Carlos Alvarez Valcarcel, Mauro Dalla Serra, Cristina Potrich, Ivonne Bernhart, Mayra Tejuca, Diana Martinez, Fabiola Pazos, Maria E. Lanio, and Gianfranco Menestrina

Effects of Lipid Composition on Membrane Permeabilization by Sticholysin I and II, Two Cytolysins of the Sea Anemone Stichodactyla helianthus
Biophys. J. 2001 80: 2761-2774. [Abstract] [Full Text] [PDF]  

Gerald W. Feigenson and Jeffrey T. Buboltz

Ternary Phase Diagram of Dipalmitoyl-PC/Dilauroyl-PC/Cholesterol: Nanoscopic Domain Formation Driven by Cholesterol
Biophys. J. 2001 80: 2775-2788. [Abstract] [Full Text] [PDF]  

Tibor Páli and Derek Marsh

Tilt, Twist, and Coiling in -Barrel Membrane Proteins: Relation to Infrared Dichroism
Biophys. J. 2001 80: 2789-2797. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Donald A. Martyn and A. M. Gordon

Influence of Length on Force and Activation-Dependent Changes in Troponin C Structure in Skinned Cardiac and Fast Skeletal Muscle
Biophys. J. 2001 80: 2798-2808. [Abstract] [Full Text] [PDF]  

Maria Angela Bagni, Barbara Colombini, Heinz Amenitsch, Sigrid Bernstorff, Christopher Charles Ashley, Gert Rapp, and Peter John Griffiths

Frequency-Dependent Distortion of Meridional Intensity Changes during Sinusoidal Length Oscillations of Activated Skeletal Muscle
Biophys. J. 2001 80: 2809-2822. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Yuichi Yamasaki, Yo Teramoto, and Kenichi Yoshikawa

Disappearance of the Negative Charge in Giant DNA with a Folding Transition
Biophys. J. 2001 80: 2823-2832. [Abstract] [Full Text] [PDF]  

Carolina M. Reyes, Riccardo Nifosì, Alan D. Frankel, and Peter A. Kollman

Molecular Dynamics and Binding Specificity Analysis of the Bovine Immunodeficiency Virus BIV Tat-TAR Complex
Biophys. J. 2001 80: 2833-2842. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Brent P. Krueger, Stefania S. Lampoura, Ivo H. M. van Stokkum, Emmanouil Papagiannakis, Jante M. Salverda, Claudiu C. Gradinaru, Danielis Rutkauskas, Roger G. Hiller, and Rienk van Grondelle

Energy Transfer in the Peridinin Chlorophyll-a Protein of Amphidinium carterae Studied by Polarized Transient Absorption and Target Analysis
Biophys. J. 2001 80: 2843-2855. [Abstract] [Full Text] [PDF]  

Nicole Radzwill, Klaus Gerwert, and Heinz-Jürgen Steinhoff

Time-Resolved Detection of Transient Movement of Helices F and G in Doubly Spin-Labeled Bacteriorhodopsin
Biophys. J. 2001 80: 2856-2866. [Abstract] [Full Text] [PDF]  

PROTEINS:

Per Hammarström, Rikard Owenius, Lars-Göran Mårtensson, Uno Carlsson, and Mikael Lindgren

High-Resolution Probing of Local Conformational Changes in Proteins by the Use of Multiple Labeling: Unfolding and Self-Assembly of Human Carbonic Anhydrase II Monitored by Spin, Fluorescent, and Chemical Reactivity Probes
Biophys. J. 2001 80: 2867-2885. [Abstract] [Full Text] [PDF]  

Malin Persson, James R. Harbridge, Per Hammarström, Ragheed Mitri, Lars-Göran Mårtensson, Uno Carlsson, Gareth R. Eaton, and Sandra S. Eaton

Comparison of Electron Paramagnetic Resonance Methods to Determine Distances between Spin Labels on Human Carbonic Anhydrase II
Biophys. J. 2001 80: 2886-2897. [Abstract] [Full Text] [PDF]  

Ulrich Kragh-Hansen, Florence Hellec, Béatrice de Foresta, Marc le Maire, and Jesper V. Møller

Detergents as Probes of Hydrophobic Binding Cavities in Serum Albumin and Other Water-Soluble Proteins
Biophys. J. 2001 80: 2898-2911. [Abstract] [Full Text] [PDF]  

Deepti Jain, Kanwal J. Kaur, and Dinakar M. Salunke

Plasticity in Protein-Peptide Recognition: Crystal Structures of Two Different Peptides Bound to Concanavalin A
Biophys. J. 2001 80: 2912-2921. [Abstract] [Full Text] [PDF]  

Yoshinori Nishioku, Masashi Nakagawa, Motoyuki Tsuda, and Masahide Terazima

A Spectrally Silent Transformation in the Photolysis of Octopus Rhodopsin: A Protein Conformational Change Without Any Accompanying Change of the Chromophore's Absorption
Biophys. J. 2001 80: 2922-2927. [Abstract] [Full Text] [PDF]  

Gregory T. Miller, John K. Hardman, and Russell Timkovich

Solution Conformation of the Met 61 to His 61 Mutant of Pseudomonas stutzeri ZoBell Ferrocytochrome c-551
Biophys. J. 2001 80: 2928-2934. [Abstract] [Full Text] [PDF]  

Thomas Gutsmann, Sven O. Hagge, James W. Larrick, Ulrich Seydel, and Andre Wiese

Interaction of CAP18-Derived Peptides with Membranes Made from Endotoxins or Phospholipids
Biophys. J. 2001 80: 2935-2945. [Abstract] [Full Text] [PDF]  

Dmitri I. Svergun, Maxim V. Petoukhov, and Michel H. J. Koch

Determination of Domain Structure of Proteins from X-Ray Solution Scattering
Biophys. J. 2001 80: 2946-2953. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Thorsten Kues, Reiner Peters, and Ulrich Kubitscheck

Visualization and Tracking of Single Protein Molecules in the Cell Nucleus
Biophys. J. 2001 80: 2954-2967. [Abstract] [Full Text] [PDF]  

Vitaly J. Napadow, Qun Chen, Vu Mai, Peter T. C. So, and Richard J. Gilbert

Quantitative Analysis of Three-Dimensional-Resolved Fiber Architecture in Heterogeneous Skeletal Muscle Tissue Using NMR and Optical Imaging Methods
Biophys. J. 2001 80: 2968-2975. [Abstract] [Full Text] [PDF]  

Andrea L. Stout

Detection and Characterization of Individual Intermolecular Bonds Using Optical Tweezers
Biophys. J. 2001 80: 2976-2986. [Abstract] [Full Text] [PDF]  

Thorsten Wohland, Rudolf Rigler, and Horst Vogel

The Standard Deviation in Fluorescence Correlation Spectroscopy
Biophys. J. 2001 80: 2987-2999. [Abstract] [Full Text] [PDF]  

I. Gautier, M. Tramier, C. Durieux, J. Coppey, R. B. Pansu, J-C. Nicolas, K. Kemnitz, and M. Coppey-Moisan

Homo-FRET Microscopy in Living Cells to Measure Monomer-Dimer Transition of GFP-Tagged Proteins
Biophys. J. 2001 80: 3000-3008. [Abstract] [Full Text] [PDF]  

Martin Stark, Clemens Möller, Daniel J. Müller, and Reinhard Guckenberger

From Images to Interactions: High-Resolution Phase Imaging in Tapping-Mode Atomic Force Microscopy
Biophys. J. 2001 80: 3009-3018. [Abstract] [Full Text] [PDF]  

Eric O. Potma, Wim P. de Boeij, and Douwe A. Wiersma

Femtosecond Dynamics of Intracellular Water Probed with Nonlinear Optical Kerr Effect Microspectroscopy
Biophys. J. 2001 80: 3019-3024. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

M. Ospeck, V. M. Eguíluz, and M. O. Magnasco

Evidence of a Hopf Bifurcation in Frog Hair Cells
Biophys. J. 2001 80: 2597-2607. [Abstract] [Full Text] [PDF]  

Matthias G. Langer, Stefan Fink, Assen Koitschev, Ulrich Rexhausen, J. K. Heinrich Hörber, and J. Peter Ruppersberg

Lateral Mechanical Coupling of Stereocilia in Cochlear Hair Bundles
Biophys. J. 2001 80: 2608-2621. [Abstract] [Full Text] [PDF]  

Christina Kelemen, Shu Chien, and G. M. Artmann

Temperature Transition of Human Hemoglobin at Body Temperature: Effects of Calcium
Biophys. J. 2001 80: 2622-2630. [Abstract] [Full Text] [PDF]  

Harish Shankaran and Sriram Neelamegham

Nonlinear Flow Affects Hydrodynamic Forces and Neutrophil Adhesion Rates in Cone-Plate Viscometers
Biophys. J. 2001 80: 2631-2648. [Abstract] [Full Text] [PDF]  

Andreas R. Bausch, Ulrike Hellerer, Markus Essler, Martin Aepfelbacher, and Erich Sackmann

Rapid Stiffening of Integrin Receptor-Actin Linkages in Endothelial Cells Stimulated with Thrombin: A Magnetic Bead Microrheology Study
Biophys. J. 2001 80: 2649-2657. [Abstract] [Full Text] [PDF]  

Manfred H. P. Wussling, Kirsten Krannich, Volker Drygalla, and Helmut Podhaisky

Calcium Waves in Agarose Gel with Cell Organelles: Implications of the Velocity Curvature Relationship
Biophys. J. 2001 80: 2658-2666. [Abstract] [Full Text] [PDF]  

Ryota Iino, Ikuko Koyama, and Akihiro Kusumi

Single Molecule Imaging of Green Fluorescent Proteins in Living Cells: E-Cadherin Forms Oligomers on the Free Cell Surface
Biophys. J. 2001 80: 2667-2677. [Abstract] [Full Text] [PDF]  

LETTERS TO THE EDITOR:

Brad S. Rothberg and Karl L. Magleby

Testing for Detailed Balance (Microscopic Reversibility) in Ion Channel Gating
Biophys. J. 2001 80: 3025-3026. [Full Text] [PDF]  

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