BIOPHYSICAL THEORY AND MODELING:

Anushka Michailova and Andrew McCulloch

Model Study of ATP and ADP Buffering, Transport of Ca²⁺ and Mg²⁺, and Regulation of Ion Pumps in Ventricular Myocyte
Biophys. J. 2001 81: 614-629. [Abstract] [Full Text] [PDF]  

Jian-xin Guo and William H. Gmeiner

Molecular Dynamics Simulation of the Human U2B" Protein Complex with U2 snRNA Hairpin IV in Aqueous Solution
Biophys. J. 2001 81: 630-642. [Abstract] [Full Text] [PDF]  

Amit Kessel, Nir Ben-Tal, and Sylvio May

Interactions of Cholesterol with Lipid Bilayers: The Preferred Configuration and Fluctuations
Biophys. J. 2001 81: 643-658. [Abstract] [Full Text] [PDF]  

S. A. Safran, T. L. Kuhl, and J. N. Israelachvili

Polymer-Induced Membrane Contraction, Phase Separation, and Fusion via Marangoni Flow
Biophys. J. 2001 81: 659-666. [Abstract] [Full Text] [PDF]  

David Sept and J. Andrew McCammon

Thermodynamics and Kinetics of Actin Filament Nucleation
Biophys. J. 2001 81: 667-674. [Abstract] [Full Text] [PDF]  

Dominic C. Chow, Larissa A. Wenning, William M. Miller, and E. Terry Papoutsakis

Modeling pO₂ Distributions in the Bone Marrow Hematopoietic Compartment. I. Krogh's Model
Biophys. J. 2001 81: 675-684. [Abstract] [Full Text] [PDF]  

Dominic C. Chow, Larissa A. Wenning, William M. Miller, and E. Terry Papoutsakis

Modeling pO₂ Distributions in the Bone Marrow Hematopoietic Compartment. II. Modified Kroghian Models
Biophys. J. 2001 81: 685-696. [Abstract] [Full Text] [PDF]  

Francesca Massi and John E. Straub

Probing the Origins of Increased Activity of the E22Q "Dutch" Mutant Alzheimer's -Amyloid Peptide
Biophys. J. 2001 81: 697-709. [Abstract] [Full Text] [PDF]  

Audun Bakk, Johan S. Høye, and Alex Hansen

Heat Capacity of Protein Folding
Biophys. J. 2001 81: 710-714. [Abstract] [Full Text] [PDF]  

Kaihsu Tai, Tongye Shen, Ulf Börjesson, Marios Philippopoulos, and J. Andrew McCammon

Analysis of a 10-ns Molecular Dynamics Simulation of Mouse Acetylcholinesterase
Biophys. J. 2001 81: 715-724. [Abstract] [Full Text] [PDF]  

R. D. Groot and K. L. Rabone

Mesoscopic Simulation of Cell Membrane Damage, Morphology Change and Rupture by Nonionic Surfactants
Biophys. J. 2001 81: 725-736. [Abstract] [Full Text] [PDF]  

Sergey Yu. Noskov and Carmay Lim

Free Energy Decomposition of Protein-Protein Interactions
Biophys. J. 2001 81: 737-750. [Abstract] [Full Text] [PDF]  

Jie Liang and Ken A. Dill

Are Proteins Well-Packed?
Biophys. J. 2001 81: 751-766. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Kathryn G. Klemic, Glenn E. Kirsch, and Stephen W. Jones

U-Type Inactivation of Kv3.1 and Shaker Potassium Channels
Biophys. J. 2001 81: 814-826. [Abstract] [Full Text] [PDF]  

John Sandblom, Juris Galvanovskis, and Barbro Jilderos

Voltage-Dependent Formation of Gramicidin Channels in Lipid Bilayers
Biophys. J. 2001 81: 827-837. [Abstract] [Full Text] [PDF]  

Teodor G. Paunescu and Sandy I. Helman

cAMP Activation of Apical Membrane Cl Channels: Theoretical Considerations for Impedance Analysis
Biophys. J. 2001 81: 838-851. [Abstract] [Full Text] [PDF]  

Teodor G. Paunescu and Sandy I. Helman

PGE₂ Activation of Apical Membrane Cl Channels in A6 Epithelia: Impedance Analysis
Biophys. J. 2001 81: 852-866. [Abstract] [Full Text] [PDF]  

Edward J. Beck and Manuel Covarrubias

Kv4 Channels Exhibit Modulation of Closed-State Inactivation in Inside-Out Patches
Biophys. J. 2001 81: 867-883. [Abstract] [Full Text] [PDF]  

Howard S. Young, Larry R. Jones, and David L. Stokes

Locating Phospholamban in Co-Crystals with Ca²⁺-ATPase by Cryoelectron Microscopy
Biophys. J. 2001 81: 884-894. [Abstract] [Full Text] [PDF]  

Clay M. Armstrong and Andrey Loboda

A Model for 4-Aminopyridine Action on K Channels: Similarities to Tetraethylammonium Ion Action
Biophys. J. 2001 81: 895-904. [Abstract] [Full Text] [PDF]  

Andrey Loboda and Clay M. Armstrong

Resolving the Gating Charge Movement Associated with Late Transitions in K Channel Activation
Biophys. J. 2001 81: 905-916. [Abstract] [Full Text] [PDF]  

Sergei Sukharev, Stewart R. Durell, and H. Robert Guy

Structural Models of the MscL Gating Mechanism
Biophys. J. 2001 81: 917-936. [Abstract] [Full Text] [PDF]  

MEMBRANES:

I. V. Polozov, G. M. Anantharamaiah, J. P. Segrest, and R. M. Epand

Osmotically Induced Membrane Tension Modulates Membrane Permeabilization by Class L Amphipathic Helical Peptides: Nucleation Model of Defect Formation
Biophys. J. 2001 81: 949-959. [Abstract] [Full Text] [PDF]  

Ephrem Tekle, R. D. Astumian, W. A. Friauf, and P. B. Chock

Asymmetric Pore Distribution and Loss of Membrane Lipid in Electroporated DOPC Vesicles
Biophys. J. 2001 81: 960-968. [Abstract] [Full Text] [PDF]  

H. Binder and K. Gawrisch

Dehydration Induces Lateral Expansion of Polyunsaturated 18:0-22:6 Phosphatidylcholine in a New Lamellar Phase
Biophys. J. 2001 81: 969-982. [Abstract] [Full Text] [PDF]  

Shu Jie Li, Yuko Yamashita, and Masahito Yamazaki

Effect of Electrostatic Interactions on Phase Stability of Cubic Phases of Membranes of Monoolein/Dioleoylphosphatidic Acid Mixtures
Biophys. J. 2001 81: 983-993. [Abstract] [Full Text] [PDF]  

Mingtao Ge, Jared S. Cohen, H. Alex Brown, and Jack H. Freed

ADP Ribosylation Factor 6 Binding to Phosphatidylinositol 4,5-Bisphosphate-Containing Vesicles Creates Defects in the Bilayer Structure: An Electron Spin Resonance Study
Biophys. J. 2001 81: 994-1005. [Abstract] [Full Text] [PDF]  

Vladimir L. Sukhorukov, Markus Kürschner, Stefan Dilsky, Thomas Lisec, Bernd Wagner, Wolfdieter A. Schenk, Roland Benz, and Ulrich Zimmermann

Phloretin-Induced Changes of Lipophilic Ion Transport across the Plasma Membrane of Mammalian Cells
Biophys. J. 2001 81: 1006-1013. [Abstract] [Full Text] [PDF]  

Emma Sparr and Håkan Wennerström

Responding Phospholipid MembranesInterplay between Hydration and Permeability
Biophys. J. 2001 81: 1014-1028. [Abstract] [Full Text] [PDF]  

Madan Katragadda, James L. Alderfer, and Philip L. Yeagle

Assembly of a Polytopic Membrane Protein Structure from the Solution Structures of Overlapping Peptide Fragments of Bacteriorhodopsin
Biophys. J. 2001 81: 1029-1036. [Abstract] [Full Text] [PDF]  

Roberto D. Lins and T. P. Straatsma

Computer Simulation of the Rough Lipopolysaccharide Membrane of Pseudomonas aeruginosa
Biophys. J. 2001 81: 1037-1046. [Abstract] [Full Text] [PDF]  

Y. Misquitta and M. Caffrey

Rational Design of Lipid Molecular Structure: A Case Study Involving the C19:1c10 Monoacylglycerol
Biophys. J. 2001 81: 1047-1058. [Abstract] [Full Text] [PDF]  

Chunbo Yuan and Linda J. Johnston

Atomic Force Microscopy Studies of Ganglioside GM1 Domains in Phosphatidylcholine and Phosphatidylcholine/Cholesterol Bilayers
Biophys. J. 2001 81: 1059-1069. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Rhea Levine, Andrea Weisberg, Irina Kulikovskaya, George McClellan, and Saul Winegrad

Multiple Structures of Thick Filaments in Resting Cardiac Muscle and Their Influence on Cross-Bridge Interactions
Biophys. J. 2001 81: 1070-1082. [Abstract] [Full Text] [PDF]  

George McClellan, Irina Kulikovskaya, and Saul Winegrad

Changes in Cardiac Contractility Related to Calcium-Mediated Changes in Phosphorylation of Myosin-Binding Protein C
Biophys. J. 2001 81: 1083-1092. [Abstract] [Full Text] [PDF]  

Felix Blyakhman, Anna Tourovskaya, and Gerald H. Pollack

Quantal Sarcomere-Length Changes in Relaxed Single Myofibrils
Biophys. J. 2001 81: 1093-1100. [Abstract] [Full Text] [PDF]  

Y. Michael Peyser, Katalin Ajtai, Thomas P. Burghardt, and Andras Muhlrad

Effect of Ionic Strength on the Conformation of Myosin Subfragment 1-Nucleotide Complexes
Biophys. J. 2001 81: 1101-1114. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Olaf F. A. Larsen, Ivo H. M. van Stokkum, Bas Gobets, Rienk van Grondelle, and Herbert van Amerongen

Probing the Structure and Dynamics of a DNA Hairpin by Ultrafast Quenching and Fluorescence Depolarization
Biophys. J. 2001 81: 1115-1126. [Abstract] [Full Text] [PDF]  

Marta de Frutos, Eric Raspaud, Amélie Leforestier, and Françoise Livolant

Aggregation of Nucleosomes by Divalent Cations
Biophys. J. 2001 81: 1127-1132. [Abstract] [Full Text] [PDF]  

Yang Zhang, Haijun Zhou, and Zhong-Can Ou-Yang

Stretching Single-Stranded DNA: Interplay of Electrostatic, Base-Pairing, and Base-Pair Stacking Interactions
Biophys. J. 2001 81: 1133-1143. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Alexander N. Melkozernov, Su Lin, Robert E. Blankenship, and Leonas Valkunas

Spectral Inhomogeneity of Photosystem I and Its Influence on Excitation Equilibration and Trapping in the Cyanobacterium Synechocystis sp. PCC6803 at 77 K
Biophys. J. 2001 81: 1144-1154. [Abstract] [Full Text] [PDF]  

Tamar Eliash, Lev Weiner, Michael Ottolenghi, and Mordechai Sheves

Specific Binding Sites for Cations in Bacteriorhodopsin
Biophys. J. 2001 81: 1155-1162. [Abstract] [Full Text] [PDF]  

W. Y. Kao, C. E. Davis, Y. I. Kim, and J. M. Beach

Fluorescence Emission Spectral Shift Measurements of Membrane Potential in Single Cells
Biophys. J. 2001 81: 1163-1170. [Abstract] [Full Text] [PDF]  

PROTEINS:

Tao Jiang, Ji-ping Zhang, Wen-rui Chang, and Dong-cai Liang

Crystal Structure of R-Phycocyanin and Possible Energy Transfer Pathways in the Phycobilisome
Biophys. J. 2001 81: 1171-1179. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Stefan Weber, Gerald Richter, Erik Schleicher, Adelbert Bacher, Klaus Möbius, and Christopher W. M. Kay

Substrate Binding to DNA Photolyase Studied by Electron Paramagnetic Resonance Spectroscopy
Biophys. J. 2001 81: 1195-1204. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Amando Siuiti Ito, Eduardo Sérgio de Souza, Simone dos Reis Barbosa, and Clóvis Ryuichi Nakaie

Fluorescence Study of Conformational Properties of Melanotropins Labeled with Aminobenzoic Acid
Biophys. J. 2001 81: 1180-1189. [Abstract] [Full Text] [PDF]  

M. Di Bari, F. Cavatorta, A. Deriu, and G. Albanese

Mean Square Fluctuations of Hydrogen Atoms and Water-Biopolymer Interactions in Hydrated Saccharides
Biophys. J. 2001 81: 1190-1194. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Jochen Guck, Revathi Ananthakrishnan, Hamid Mahmood, Tess J. Moon, C. Casey Cunningham, and Josef Käs

The Optical Stretcher: A Novel Laser Tool to Micromanipulate Cells
Biophys. J. 2001 81: 767-784. [Abstract] [Full Text] [PDF]  

Valeriy Lukyanenko, Sergej Viatchenko-Karpinski, Anton Smirnov, Theodore F. Wiesner, and Sandor Györke

Dynamic Regulation of Sarcoplasmic Reticulum Ca²⁺ Content and Release by Luminal Ca²⁺-Sensitive Leak in Rat Ventricular Myocytes
Biophys. J. 2001 81: 785-798. [Abstract] [Full Text] [PDF]  

Michael R. King and Daniel A. Hammer

Multiparticle Adhesive Dynamics. Interactions between Stably Rolling Cells
Biophys. J. 2001 81: 799-813. [Abstract] [Full Text] [PDF]  

BIOENERGETICS:

Brian W. Beck, Qian Xie, and Toshiko Ichiye

Sequence Determination of Reduction Potentials by Cysteinyl Hydrogen Bonds and Peptide Dipoles in [4Fe-4S] Ferredoxins
Biophys. J. 2001 81: 601-613. [Abstract] [Full Text] [PDF]  

ELECTROPHYSIOLOGY:

Russell E. Thompson, Manfred Lindau, and Watt W. Webb

Robust, High-Resolution, Whole Cell Patch-Clamp Capacitance Measurements Using Square Wave Stimulation
Biophys. J. 2001 81: 937-948. [Abstract] [Full Text] [PDF]  

CORRECTIONS:

Correction for vol. 81, p. 204
Biophys. J. 2001 81: 1205(2) [Full Text] [PDF]  

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