BIOPHYSICAL THEORY AND MODELING:

Mark A. Olson

Calculations of Free-Energy Contributions to Protein-RNA Complex Stabilization
Biophys. J. 2001 81: 1841-1853. [Abstract] [Full Text] [PDF]  

Stanislav Y. Shvartsman, H. Steven Wiley, William M. Deen, and Douglas A. Lauffenburger

Spatial Range of Autocrine Signaling: Modeling and Computational Analysis
Biophys. J. 2001 81: 1854-1867. [Abstract] [Full Text] [PDF]  

Alexandra Solovyova, Peter Schuck, Lionel Costenaro, and Christine Ebel

Non-Ideality by Sedimentation Velocity of Halophilic Malate Dehydrogenase in Complex Solvents
Biophys. J. 2001 81: 1868-1880. [Abstract] [Full Text] [PDF]  

Bhupinder Madan and Kim A. Sharp

Hydration Heat Capacity of Nucleic Acid Constituents Determined from the Random Network Model
Biophys. J. 2001 81: 1881-1887. [Abstract] [Full Text] [PDF]  

Jan Gimsa and Derk Wachner

Analytical Description of the Transmembrane Voltage Induced on Arbitrarily Oriented Ellipsoidal and Cylindrical Cells
Biophys. J. 2001 81: 1888-1896. [Abstract] [Full Text] [PDF]  

Ingomar L. Jäger

The "Sticky Chain": A Kinetic Model for the Deformation of Biological Macromolecules
Biophys. J. 2001 81: 1897-1906. [Abstract] [Full Text] [PDF]  

Anders E. Carlsson

Growth of Branched Actin Networks against Obstacles
Biophys. J. 2001 81: 1907-1923. [Abstract] [Full Text] [PDF]  

Konstantin V. Klenin and Jörg Langowski

Intrachain Reactions of Supercoiled DNA Simulated by Brownian Dynamics
Biophys. J. 2001 81: 1924-1929. [Abstract] [Full Text] [PDF]  

Stuart S. Olmsted, Janet L. Padgett, Ashley I. Yudin, Kevin J. Whaley, Thomas R. Moench, and Richard A. Cone

Diffusion of Macromolecules and Virus-Like Particles in Human Cervical Mucus
Biophys. J. 2001 81: 1930-1937. [Abstract] [Full Text] [PDF]  

Antonio Riccio, Maurizio Tamburrini, Bruno Giardina, and Guido di Prisco

Molecular Dynamics Analysis of a Second Phosphate Site in the Hemoglobins of the Seabird, South Polar Skua. Is There a Site-Site Migratory Mechanism along the Central Cavity?
Biophys. J. 2001 81: 1938-1946. [Abstract] [Full Text] [PDF]  

Dmitri A. Rusakov

The Role of Perisynaptic Glial Sheaths in Glutamate Spillover and Extracellular Ca²⁺ Depletion
Biophys. J. 2001 81: 1947-1959. [Abstract] [Full Text] [PDF]  

Oleg V. Tsodikov, Jill A. Holbrook, Irina A. Shkel, and M. Thomas Record, Jr.

Analytic Binding Isotherms Describing Competitive Interactions of a Protein Ligand with Specific and Nonspecific Sites on the Same DNA Oligomer
Biophys. J. 2001 81: 1960-1969. [Abstract] [Full Text] [PDF]  

Volker Scheuss and Erwin Neher

Estimating Synaptic Parameters from Mean, Variance, and Covariance in Trains of Synaptic Responses
Biophys. J. 2001 81: 1970-1989. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Arturo Picones, Edmund Keung, and Leslie C. Timpe

Unitary Conductance Variation in Kir2.1 and in Cardiac Inward Rectifier Potassium Channels
Biophys. J. 2001 81: 2035-2049. [Abstract] [Full Text] [PDF]  

Edward M. Balog, Bradley R. Fruen, Nirah H. Shomer, and Charles F. Louis

Divergent Effects of the Malignant Hyperthermia-Susceptible Arg⁶¹⁵Cys Mutation on the Ca²⁺ and Mg²⁺ Dependence of the RyR1
Biophys. J. 2001 81: 2050-2058. [Abstract] [Full Text] [PDF]  

Sven Geibel, Thomas Friedrich, Pal Ormos, Phillip G. Wood, Georg Nagel, and Ernst Bamberg

The Voltage-Dependent Proton Pumping in Bacteriorhodopsin Is Characterized by Optoelectric Behavior
Biophys. J. 2001 81: 2059-2068. [Abstract] [Full Text] [PDF]  

Christian Lüpfert, Ernst Grell, Verena Pintschovius, Hans-Jürgen Apell, Flemming Cornelius, and Ronald J. Clarke

Rate Limitation of the Na⁺,K⁺-ATPase Pump Cycle
Biophys. J. 2001 81: 2069-2081. [Abstract] [Full Text] [PDF]  

Ziv Gil, Karl L. Magleby, and Shai D. Silberberg

Two-Dimensional Kinetic Analysis Suggests Nonsequential Gating of Mechanosensitive Channels in Xenopus Oocytes
Biophys. J. 2001 81: 2082-2099. [Abstract] [Full Text] [PDF]  

John P. O'Reilly, Sho-Ya Wang, and Ging Kuo Wang

Residue-Specific Effects on Slow Inactivation at V787 in D2-S6 of Na_v1.4 Sodium Channels
Biophys. J. 2001 81: 2100-2111. [Abstract] [Full Text] [PDF]  

MEMBRANES:

R. Rukmini, Satinder S. Rawat, Samares C. Biswas, and Amitabha Chattopadhyay

Cholesterol Organization in Membranes at Low Concentrations: Effects of Curvature Stress and Membrane Thickness
Biophys. J. 2001 81: 2122-2134. [Abstract] [Full Text] [PDF]  

V. Matti, J. Säily, Samppa J. Ryhänen, Juha M. Holopainen, Stefano Borocci, Giovanna Mancini, and Paavo K. J. Kinnunen

Characterization of Mixed Monolayers of Phosphatidylcholine and a Dicationic Gemini Surfactant SS-1 with a Langmuir Balance: Effects Of DNA
Biophys. J. 2001 81: 2135-2143. [Abstract] [Full Text] [PDF]  

Aline Percot and Michel Lafleur

Direct Observation of Domains in Model Stratum Corneum Lipid Mixtures by Raman Microspectroscopy
Biophys. J. 2001 81: 2144-2153. [Abstract] [Full Text] [PDF]  

Derek Marsh

Elastic Constants of Polymer-Grafted Lipid Membranes
Biophys. J. 2001 81: 2154-2162. [Abstract] [Full Text] [PDF]  

Kerney J. Glover, Jennifer A. Whiles, Guohua Wu, Nan-jun Yu, Raymond Deems, Jochem O. Struppe, Ruth E. Stark, Elizabeth A. Komives, and Regitze R. Vold

Structural Evaluation of Phospholipid Bicelles for Solution-State Studies of Membrane-Associated Biomolecules
Biophys. J. 2001 81: 2163-2171. [Abstract] [Full Text] [PDF]  

Barbora Piknova, William R. Schief, Viola Vogel, Bohdana M. Discher, and Stephen B. Hall

Discrepancy between Phase Behavior of Lung Surfactant Phospholipids and the Classical Model of Surfactant Function
Biophys. J. 2001 81: 2172-2180. [Abstract] [Full Text] [PDF]  

Kenichi Suzuki and Michael P. Sheetz

Binding of Cross-Linked Glycosylphosphatidylinositol-Anchored Proteins to Discrete Actin-Associated Sites and Cholesterol-Dependent Domains
Biophys. J. 2001 81: 2181-2189. [Abstract] [Full Text] [PDF]  

Tomasz Róg and Marta Pasenkiewicz-Gierula

Cholesterol Effects on the Phosphatidylcholine Bilayer Nonpolar Region: A Molecular Simulation Study
Biophys. J. 2001 81: 2190-2202. [Abstract] [Full Text] [PDF]  

Satoru Yamaguchi, Daniel Huster, Alan Waring, Robert I. Lehrer, William Kearney, Brian F. Tack, and Mei Hong

Orientation and Dynamics of an Antimicrobial Peptide in the Lipid Bilayer by Solid-State NMR Spectroscopy
Biophys. J. 2001 81: 2203-2214. [Abstract] [Full Text] [PDF]  

M. Ramakrishnan, V. Anbazhagan, T. V. Pratap, D. Marsh, and Musti J. Swamy

Membrane Insertion and Lipid-Protein Interactions of Bovine Seminal Plasma Protein PDC-109 Investigated by Spin-Label Electron Spin Resonance Spectroscopy
Biophys. J. 2001 81: 2215-2225. [Abstract] [Full Text] [PDF]  

Michael J. Saxton

Anomalous Subdiffusion in Fluorescence Photobleaching Recovery: A Monte Carlo Study
Biophys. J. 2001 81: 2226-2240. [Abstract] [Full Text] [PDF]  

Ken G. Victor and David S. Cafiso

Location and Dynamics of Basic Peptides at the Membrane Interface: Electron Paramagnetic Resonance Spectroscopy of Tetramethyl-Piperidine-N-Oxyl-4-Amino-4-Carboxylic Acid-Labeled Peptides
Biophys. J. 2001 81: 2241-2250. [Abstract] [Full Text] [PDF]  

Burkhard Bechinger

Membrane Insertion and Orientation of Polyalanine Peptides: A ¹⁵N Solid-State NMR Spectroscopy Investigation
Biophys. J. 2001 81: 2251-2256. [Abstract] [Full Text] [PDF]  

Rania Leventis and John R. Silvius

Use of Cyclodextrins to Monitor Transbilayer Movement and Differential Lipid Affinities of Cholesterol
Biophys. J. 2001 81: 2257-2267. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Mu Gao, Hui Lu, and Klaus Schulten

Simulated Refolding of Stretched Titin Immunoglobulin Domains
Biophys. J. 2001 81: 2268-2277. [Abstract] [Full Text] [PDF]  

Kenneth B. Campbell, Maria V. Razumova, Robert D. Kirkpatrick, and Bryan K. Slinker

Nonlinear Myofilament Regulatory Processes Affect Frequency-Dependent Muscle Fiber Stiffness
Biophys. J. 2001 81: 2278-2296. [Abstract] [Full Text] [PDF]  

R. Yamasaki, M. Berri, Y. Wu, K. Trombitás, M. McNabb, M. S. Z. Kellermayer, C. Witt, D. Labeit, S. Labeit, M. Greaser, and H. Granzier

Titin-Actin Interaction in Mouse Myocardium: Passive Tension Modulation and Its Regulation by Calcium/S100A1
Biophys. J. 2001 81: 2297-2313. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Savitha Devanathan, Su Lin, Michael A. Cusanovich, Neal Woodbury, and Gordon Tollin

Early Photocycle Kinetic Behavior of the E46A and Y42F Mutants of Photoactive Yellow Protein: Femtosecond Spectroscopy
Biophys. J. 2001 81: 2314-2319. [Abstract] [Full Text] [PDF]  

PROTEINS:

Apurba K. Sau, Chun-An Chen, James A. Cowan, Shyamalava Mazumdar, and Samaresh Mitra

Steady-State and Time-Resolved Fluorescence Studies on Wild Type and Mutant Chromatium vinosum High Potential Iron Proteins: Holo- and Apo-Forms
Biophys. J. 2001 81: 2320-2330. [Abstract] [Full Text] [PDF]  

Christian Blouin, J. Guy Guillemette, and Carmichael J. A. Wallace

Resolving the Individual Components of a pH-Induced Conformational Change
Biophys. J. 2001 81: 2331-2338. [Abstract] [Full Text] [PDF]  

Amos M. Tsai, Terrence J. Udovic, and Dan A. Neumann

The Inverse Relationship between Protein Dynamics and Thermal Stability
Biophys. J. 2001 81: 2339-2343. [Abstract] [Full Text] [PDF]  

Robert B. Best, Bin Li, Annette Steward, Valerie Daggett, and Jane Clarke

Can Non-Mechanical Proteins Withstand Force? Stretching Barnase by Atomic Force Microscopy and Molecular Dynamics Simulation
Biophys. J. 2001 81: 2344-2356. [Abstract] [Full Text] [PDF]  

Rikard Owenius, Maria Österlund, Magdalena Svensson, Mikael Lindgren, Egon Persson, Per-Ola Freskgård, and Uno Carlsson

Spin and Fluorescent Probing of the Binding Interface between Tissue Factor and Factor VIIa at Multiple Sites
Biophys. J. 2001 81: 2357-2369. [Abstract] [Full Text] [PDF]  

Ivan E. Collier, Saveez Saffarian, Barry L. Marmer, Elliot L. Elson, and Greg Goldberg

Substrate Recognition by Gelatinase A: The C-Terminal Domain Facilitates Surface Diffusion
Biophys. J. 2001 81: 2370-2377. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Shaohua Xu and Binhua Lin

The Mechanism of Oxidation-Induced Low-Density Lipoprotein Aggregation: An Analogy to Colloidal Aggregation and Beyond?
Biophys. J. 2001 81: 2403-2413. [Abstract] [Full Text] [PDF]  

Amélie Leforestier, Jacques Dubochet, and Françoise Livolant

Bilayers of Nucleosome Core Particles
Biophys. J. 2001 81: 2414-2421. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Michael K. Cheezum, William F. Walker, and William H. Guilford

Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles
Biophys. J. 2001 81: 2378-2388. [Abstract] [Full Text] [PDF]  

Rigo Pantoja, Daniel Sigg, Rikard Blunck, Francisco Bezanilla, and James R. Heath

Bilayer Reconstitution of Voltage-Dependent Ion Channels using a Microfabricated Silicon Chip
Biophys. J. 2001 81: 2389-2394. [Abstract] [Full Text] [PDF]  

Zongping Xia and Yuechueng Liu

Reliable and Global Measurement of Fluorescence Resonance Energy Transfer Using Fluorescence Microscopes
Biophys. J. 2001 81: 2395-2402. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Avi Caspi, Orna Yeger, Inna Grosheva, Alexander D. Bershadsky, and Michael Elbaum

A New Dimension in Retrograde Flow: Centripetal Movement of Engulfed Particles
Biophys. J. 2001 81: 1990-2000. [Abstract] [Full Text] [PDF]  

Stephen D. Rodgers, Raymond T. Camphausen, and Daniel A. Hammer

Tyrosine Sulfation Enhances but Is Not Required for PSGL-1 Rolling Adhesion on P-Selectin
Biophys. J. 2001 81: 2001-2009. [Abstract] [Full Text] [PDF]  

Eric O. Potma, Wim P. de Boeij, Leonard Bosgraaf, Jeroen Roelofs, Peter J. M. van Haastert, and Douwe A Wiersma

Reduced Protein Diffusion Rate by Cytoskeleton in Vegetative and Polarized Dictyostelium Cells
Biophys. J. 2001 81: 2010-2019. [Abstract] [Full Text] [PDF]  

Harry L. Goldsmith, T. Alexander Quinn, Gillian Drury, Constantina Spanos, Fiona A. McIntosh, and Scott I. Simon

Dynamics of Neutrophil Aggregation in Couette Flow Revealed by Videomicroscopy: Effect of Shear Rate on Two-Body Collision Efficiency and Doublet Lifetime
Biophys. J. 2001 81: 2020-2034. [Abstract] [Full Text] [PDF]  

BIOENERGETICS:

Taka-aki Ono, Annette Rompel, Hiroyuki Mino, and Noriyuki Chiba

Ca²⁺ Function in Photosynthetic Oxygen Evolution Studied by Alkali Metal Cations Substitution
Biophys. J. 2001 81: 1831-1840. [Abstract] [Full Text] [PDF]  

ELECTROPHYSIOLOGY:

Alexandra P. Henriquez, Rolf Vogel, Barbara J. Muller-Borer, Craig S. Henriquez, Robert Weingart, and Wayne E. Cascio

Influence of Dynamic Gap Junction Resistance on Impulse Propagation in Ventricular Myocardium: A Computer Simulation Study
Biophys. J. 2001 81: 2112-2121. [Abstract] [Full Text] [PDF]  

OBITUARY:

Christopher I. Bayly

Peter A. Kollman, 1945-2001
Biophys. J. 2001 81: 2422(4) [Full Text] [PDF]  

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