BIOPHYSICAL THEORY AND MODELING:

R. Jay Mashl, H. Larry Scott, Shankar Subramaniam, and Eric Jakobsson

Molecular Simulation of Dioleoylphosphatidylcholine Lipid Bilayers at Differing Levels of Hydration
Biophys. J. 2001 81: 3005-3015. [Abstract] [Full Text] [PDF]  

Gal Almogy, Lewi Stone, and Nir Ben-Tal

Multi-Stage Regulation, a Key to Reliable Adaptive Biochemical Pathways
Biophys. J. 2001 81: 3016-3028. [Abstract] [Full Text] [PDF]  

Sandeep V. Pandit, Robert B. Clark, Wayne R. Giles, and Semahat S. Demir

A Mathematical Model of Action Potential Heterogeneity in Adult Rat Left Ventricular Myocytes
Biophys. J. 2001 81: 3029-3051. [Abstract] [Full Text] [PDF]  

Günther H. Peters and Robert P. Bywater

Influence of a Lipid Interface on Protein Dynamics in a Fungal Lipase
Biophys. J. 2001 81: 3052-3065. [Abstract] [Full Text] [PDF]  

Daria A. Narmoneva, Jean Y. Wang, and Lori A. Setton

A Noncontacting Method for Material Property Determination for Articular Cartilage from Osmotic Loading
Biophys. J. 2001 81: 3066-3076. [Abstract] [Full Text] [PDF]  

Paul S. Crozier, Douglas Henderson, Richard L. Rowley, and David D. Busath

Model Channel Ion Currents in NaCl-Extended Simple Point Charge Water Solution with Applied-Field Molecular Dynamics
Biophys. J. 2001 81: 3077-3089. [Abstract] [Full Text] [PDF]  

Francesca De Rienzo, Razif R. Gabdoulline, M. Cristina Menziani, Pier G. De Benedetti, and Rebecca C. Wade

Electrostatic Analysis and Brownian Dynamics Simulation of the Association of Plastocyanin and Cytochrome F
Biophys. J. 2001 81: 3090-3104. [Abstract] [Full Text] [PDF]  

Chris Beck, Xavier Siemens, and David L. Weaver

Diffusion-Collision Model Study of Misfolding in a Four-Helix Bundle Protein
Biophys. J. 2001 81: 3105-3115. [Abstract] [Full Text] [PDF]  

Thomas B. Kepler and Timothy C. Elston

Stochasticity in Transcriptional Regulation: Origins, Consequences, and Mathematical Representations
Biophys. J. 2001 81: 3116-3136. [Abstract] [Full Text] [PDF]  

A. I. Shushin and A. V. Barzykin

Effect of Local Molecular Shape and Anisotropic Reactivity on the Rate of Diffusion-Controlled Reactions
Biophys. J. 2001 81: 3137-3145. [Abstract] [Full Text] [PDF]  

Andrej Vilfan

The Binding Dynamics of Tropomyosin on Actin
Biophys. J. 2001 81: 3146-3155. [Abstract] [Full Text] [PDF]  

Eric J. Hustedt and Albert H. Beth

The Sensitivity of Saturation Transfer Electron Paramagnetic Resonance Spectra to Restricted Amplitude Uniaxial Rotational Diffusion
Biophys. J. 2001 81: 3156-3165. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Francesco Tombola, Cristina Pagliaccia, Silvia Campello, John L. Telford, Cesare Montecucco, Emanuele Papini, and Mario Zoratti

How the Loop and Middle Regions Influence the Properties of Helicobacter pylori VacA Channels
Biophys. J. 2001 81: 3204-3215. [Abstract] [Full Text] [PDF]  

Christopher W. Ward, Feliciano Protasi, Daniel Castillo, Yaming Wang, S. R. Wayne Chen, Isaac N. Pessah, Paul D. Allen, and Martin F. Schneider

Type 1 and Type 3 Ryanodine Receptors Generate Different Ca²⁺ Release Event Activity in Both Intact and Permeabilized Myotubes
Biophys. J. 2001 81: 3216-3230. [Abstract] [Full Text] [PDF]  

Simon Sharpe, Chris W. M. Grant, Kathryn R. Barber, John Giusti, and Michael R. Morrow

Structural Implications of a ValGlu Mutation in Transmembrane Peptides from the EGF Receptor
Biophys. J. 2001 81: 3231-3239. [Abstract] [Full Text] [PDF]  

Angela F. Dulhunty, Derek Laver, Suzanne M. Curtis, Suzi Pace, Claudia Haarmann, and Esther M. Gallant

Characteristics of Irreversible ATP Activation Suggest that Native Skeletal Ryanodine Receptors Can Be Phosphorylated via an Endogenous CaMKII
Biophys. J. 2001 81: 3240-3252. [Abstract] [Full Text] [PDF]  

Hassan Musa, Jonathan D. Gough, Watson J. Lees, and Richard D. Veenstra

Ionic Blockade of the Rat Connexin40 Gap Junction Channel by Large Tetraalkylammonium Ions
Biophys. J. 2001 81: 3253-3274. [Abstract] [Full Text] [PDF]  

Exing Wang, Warren L. Erdahl, Shawn A. Hamidinia, Clifford J. Chapman, Richard W. Taylor, and Douglas R. Pfeiffer

Transport Properties of the Calcium Ionophore ETH-129
Biophys. J. 2001 81: 3275-3284. [Abstract] [Full Text] [PDF]  

Rieko Arimoto, Oleg G. Kisselev, Gergely M. Makara, and Garland R. Marshall

Rhodopsin-Transducin Interface: Studies with Conformationally Constrained Peptides
Biophys. J. 2001 81: 3285-3293. [Abstract] [Full Text] [PDF]  

Chris A. Ahern, Dipankar Bhattacharya, Lindsay Mortenson, and Roberto Coronado

A Component of Excitation-Contraction Coupling Triggered in the Absence of the T671-L690 and L720-Q765 Regions of the II-III Loop of the Dihydropyridine Receptor _1s Pore Subunit
Biophys. J. 2001 81: 3294-3307. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Valentina Stipani, Enrico Gallucci, Silvia Micelli, Vittorio Picciarelli, and Roland Benz

Channel Formation by Salmon and Human Calcitonin in Black Lipid Membranes
Biophys. J. 2001 81: 3332-3338. [Abstract] [Full Text] [PDF]  

Laure Koubi, Mounir Tarek, Sanjoy Bandyopadhyay, Michael L. Klein, and Daphna Scharf

Membrane Structural Perturbations Caused by Anesthetics and Nonimmobilizers: A Molecular Dynamics Investigation
Biophys. J. 2001 81: 3339-3345. [Abstract] [Full Text] [PDF]  

Carla M. Franzin and Peter M. Macdonald

Polylysine-Induced ²H NMR-Observable Domains in Phosphatidylserine/Phosphatidylcholine Lipid Bilayers
Biophys. J. 2001 81: 3346-3362. [Abstract] [Full Text] [PDF]  

Scott M. Blackman, Eric J. Hustedt, Charles E. Cobb, and Albert H. Beth

Flexibility of the Cytoplasmic Domain of the Anion Exchange Protein, Band 3, in Human Erythrocytes
Biophys. J. 2001 81: 3363-3376. [Abstract] [Full Text] [PDF]  

Teruhiko Baba, Hiroyuki Minamikawa, Masakatsu Hato, and Tetsurou Handa

Hydration and Molecular Motions in Synthetic Phytanyl-Chained Glycolipid Vesicle Membranes
Biophys. J. 2001 81: 3377-3386. [Abstract] [Full Text] [PDF]  

Istvan P. Sugar, Nancy K. Mizuno, Maureen M. Momsen, and Howard L. Brockman

Lipid Lateral Organization in Fluid Interfaces Controls the Rate of Colipase Association
Biophys. J. 2001 81: 3387-3397. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Philip Serwer and Shirley J. Hayes

Partially Condensed DNA Conformations Observed by Single Molecule Fluorescence Microscopy
Biophys. J. 2001 81: 3398-3408. [Abstract] [Full Text] [PDF]  

M. Y. Tolstorukov, V. I. Ivanov, G. G. Malenkov, R. L. Jernigan, and V. B. Zhurkin

Sequence-Dependent BA Transition in DNA Evaluated with Dimeric and Trimeric Scales
Biophys. J. 2001 81: 3409-3421. [Abstract] [Full Text] [PDF]  

Sylvie Nonin-Lecomte, Chin H. Lin, and Dinshaw J. Patel

Additional Hydrogen Bonds and Base-Pair Kinetics in the Symmetrical AMP-DNA Aptamer Complex
Biophys. J. 2001 81: 3422-3431. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Géza I. Groma, Lóránd Kelemen, Ágnes Kulcsár, Melinda Lakatos, and György Váró

Photocycle of Dried Acid Purple Form of Bacteriorhodopsin
Biophys. J. 2001 81: 3432-3441. [Abstract] [Full Text] [PDF]  

Marc T. Facciotti, Shahab Rouhani, Fredrick T. Burkard, Felicia M. Betancourt, Kenneth H. Downing, Robert B. Rose, Gerry McDermott, and Robert M. Glaeser

Structure of an Early Intermediate in the M-State Phase of the Bacteriorhodopsin Photocycle
Biophys. J. 2001 81: 3442-3455. [Abstract] [Full Text] [PDF]  

PROTEINS:

Hui-Chih Hung and Gu-Gang Chang

Multiple Unfolding Intermediates of Human Placental Alkaline Phosphatase in Equilibrium Urea Denaturation
Biophys. J. 2001 81: 3456-3471. [Abstract] [Full Text] [PDF]  

Andras D. Kaposi, Jane M. Vanderkooi, Wayne W. Wright, Judit Fidy, and Solomon S. Stavrov

Influence of Static and Dynamic Disorder on the Visible and Infrared Absorption Spectra of Carbonmonoxy Horseradish Peroxidase
Biophys. J. 2001 81: 3472-3482. [Abstract] [Full Text] [PDF]  

Noriyuki Futatsugi and Minoru Tsuda

Molecular Dynamics Simulations of Gly-12Val Mutant of p21^ras: Dynamic Inhibition Mechanism
Biophys. J. 2001 81: 3483-3488. [Abstract] [Full Text] [PDF]  

Maria M. Garcia-Mira and Jose M. Sanchez-Ruiz

pH Corrections and Protein Ionization in Water/Guanidinium Chloride
Biophys. J. 2001 81: 3489-3502. [Abstract] [Full Text] [PDF]  

Mark A. Tito, Julie Miller, Nicola Walker, Kate F. Griffin, E. Diane Williamson, Dominique Despeyroux-Hill, Richard W. Titball, and Carol V. Robinson

Probing Molecular Interactions in Intact Antibody: Antigen Complexes, an Electrospray Time-of-Flight Mass Spectrometry Approach
Biophys. J. 2001 81: 3503-3509. [Abstract] [Full Text] [PDF]  

Ettore Bismuto, Enrico Gratton, and Don C. Lamb

Dynamics of ANS Binding to Tuna Apomyoglobin Measured with Fluorescence Correlation Spectroscopy
Biophys. J. 2001 81: 3510-3521. [Abstract] [Full Text] [PDF]  

Stefania Cinelli, Francesco Spinozzi, Rosangela Itri, Stephanie Finet, Flavio Carsughi, Giuseppe Onori, and Paolo Mariani

Structural Characterization of the pH-Denatured States of Ferricytochrome-c by Synchrotron Small Angle X-Ray Scattering
Biophys. J. 2001 81: 3522-3533. [Abstract] [Full Text] [PDF]  

Burak Erman

Analysis of Multiple Folding Routes of Proteins by a Coarse-Grained Dynamics Model
Biophys. J. 2001 81: 3534-3544. [Abstract] [Full Text] [PDF]  

Alexei V. Cherepanov and Simon de Vries

Binding of Nucleotides by T4 DNA Ligase and T4 RNA Ligase: Optical Absorbance and Fluorescence Studies
Biophys. J. 2001 81: 3545-3559. [Abstract] [Full Text] [PDF]  

Michael J. Kuiper, Peter L. Davies, and Virginia K. Walker

A Theoretical Model of a Plant Antifreeze Protein from Lolium perenne
Biophys. J. 2001 81: 3560-3565. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Chengjun Sun, Eleonora Vaccaro, and J. Herbert Waite

Oxidative Stress and the Mechanical Properties of Naturally Occurring Chimeric Collagen-Containing Fibers
Biophys. J. 2001 81: 3590-3595. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Antonio Alonso, Wilmar Pereira dos Santos, Sérgio Jacintho Leonor, Judes Gonçalves dos Santos, and Marcel Tabak

Stratum Corneum Protein Dynamics as Evaluated by a Spin-Label Maleimide Derivative: Effect of Urea
Biophys. J. 2001 81: 3566-3576. [Abstract] [Full Text] [PDF]  

Lóránd Kelemen and Pál Ormos

Structural Changes in Bacteriorhodopsin during the Photocycle Measured by Time-Resolved Polarized Fourier Transform Infrared Spectroscopy
Biophys. J. 2001 81: 3577-3589. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Jeanie L. Drury and Micah Dembo

Aspiration of Human Neutrophils: Effects of Shear Thinning and Cortical Dissipation
Biophys. J. 2001 81: 3166-3177. [Abstract] [Full Text] [PDF]  

James C-M. Lee and Dennis E. Discher

Deformation-Enhanced Fluctuations in the Red Cell Skeleton with Theoretical Relations to Elasticity, Connectivity, and Spectrin Unfolding
Biophys. J. 2001 81: 3178-3192. [Abstract] [Full Text] [PDF]  

Paula A. Giardini and Julie A. Theriot

Effects of Intermediate Filaments on Actin-Based Motility of Listeria monocytogenes
Biophys. J. 2001 81: 3193-3203. [Abstract] [Full Text] [PDF]  

BIOENERGETICS:

Frédéric Joubert, Jacqueline A. Hoerter, and Jean-Luc Mazet

Discrimination of Cardiac Subcellular Creatine Kinase Fluxes by NMR Spectroscopy: A New Method of Analysis
Biophys. J. 2001 81: 2995-3004. [Abstract] [Full Text] [PDF]  

ELECTROPHYSIOLOGY:

Sebastian Barg, Xiaosong Ma, Lena Eliasson, Juris Galvanovskis, Sven O. Göpel, Stefanie Obermüller, Josef Platzer, Erik Renström, Michel Trus, Daphne Atlas, Jörg Striessnig, and Patrik Rorsman

Fast Exocytosis with Few Ca²⁺ Channels in Insulin-Secreting Mouse Pancreatic B Cells
Biophys. J. 2001 81: 3308-3323. [Abstract] [Full Text] [PDF]  

Thomas J. Hund, Jan P. Kucera, Niels F. Otani, and Yoram Rudy

Ionic Charge Conservation and Long-Term Steady State in the Luo-Rudy Dynamic Cell Model
Biophys. J. 2001 81: 3324-3331. [Abstract] [Full Text] [PDF]  

CORRECTIONS:

Correction for vol. 77, p. 3293
Biophys. J. 2001 81: 3596(6) [Full Text] [PDF]  

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