BIOPHYSICAL THEORY AND MODELING:

Kaupo Palo, Leif Brand, Christian Eggeling, Stefan Jäger, Peet Kask, and Karsten Gall

Fluorescence Intensity and Lifetime Distribution Analysis: Toward Higher Accuracy in Fluorescence Fluctuation Spectroscopy
Biophys. J. 2002 83: 605-618. [Abstract] [Full Text] [PDF]  

Pedro A. De-Alarcón, Alberto Pascual-Montano, Amarnath Gupta, and Jose M. Carazo

Modeling Shape and Topology of Low-Resolution Density Maps of Biological Macromolecules
Biophys. J. 2002 83: 619-632. [Abstract] [Full Text] [PDF]  

Indira H. Shrivastava, D. Peter Tieleman, Philip C. Biggin, and Mark S. P. Sansom

K⁺ versus Na⁺ Ions in a K Channel Selectivity Filter: A Simulation Study
Biophys. J. 2002 83: 633-645. [Abstract] [Full Text] [PDF]  

Kenneth J. Kauffman, John David Pajerowski, Neema Jamshidi, Bernhard O. Palsson, and Jeremy S. Edwards

Description and Analysis of Metabolic Connectivity and Dynamics in the Human Red Blood Cell
Biophys. J. 2002 83: 646-662. [Abstract] [Full Text] [PDF]  

Ozlem Keskin, Stewart R. Durell, Ivet Bahar, Robert L. Jernigan, and David G. Covell

Relating Molecular Flexibility to Function: A Case Study of Tubulin
Biophys. J. 2002 83: 663-680. [Abstract] [Full Text] [PDF]  

Tru Huynh, Jeremy C. Smith, and Alain Sanson

Protein Unfolding Transitions in an Intrinsically Unstable Annexin Domain: Molecular Dynamics Simulation and Comparison with Nuclear Magnetic Resonance Data
Biophys. J. 2002 83: 681-698. [Abstract] [Full Text] [PDF]  

Canan Baysal and Ali Rana Atilgan

Relaxation Kinetics and the Glassiness of Proteins: The Case of Bovine Pancreatic Trypsin Inhibitor
Biophys. J. 2002 83: 699-705. [Abstract] [Full Text] [PDF]  

Csilla Gergely, Joseph Hemmerlé, Pierre Schaaf, J. K. Heinrich Hörber, Jean-Claude Voegel, and Bernard Senger

Multi-Bead-and-Spring Model to Interpret Protein Detachment Studied by AFM Force Spectroscopy
Biophys. J. 2002 83: 706-722. [Abstract] [Full Text] [PDF]  

Sibsankar Kundu, Julia S. Melton, Dan C. Sorensen, and George N. Phillips, Jr.

Dynamics of Proteins in Crystals: Comparison of Experiment with Simple Models
Biophys. J. 2002 83: 723-732. [Abstract] [Full Text] [PDF]  

Yukio Magariyama and Seishi Kudo

A Mathematical Explanation of an Increase in Bacterial Swimming Speed with Viscosity in Linear-Polymer Solutions
Biophys. J. 2002 83: 733-739. [Abstract] [Full Text] [PDF]  

Upinder S. Bhalla

Mechanisms for Temporal Tuning and Filtering by Postsynaptic Signaling Pathways
Biophys. J. 2002 83: 740-752. [Abstract] [Full Text] [PDF]  

Feng Cheng, Jianhua Shen, Xiaomin Luo, Hualiang Jiang, and Kaixian Chen

Steered Molecular Dynamics Simulations on the "Tail Helix Latch" Hypothesis in the Gelsolin Activation Process
Biophys. J. 2002 83: 753-762. [Abstract] [Full Text] [PDF]  

Peter J. Bond, José D. Faraldo-Gómez, and Mark S. P. Sansom

OmpA: A Pore or Not a Pore? Simulation and Modeling Studies
Biophys. J. 2002 83: 763-775. [Abstract] [Full Text] [PDF]  

Abraham R. Tzafriri, Michel Bercovier, and Hanna Parnas

Reaction Diffusion Model of the Enzymatic Erosion of Insoluble Fibrillar Matrices
Biophys. J. 2002 83: 776-793. [Abstract] [Full Text] [PDF]  

Joanna Trylska, Piotr Bala, Maciej Geller, and Pawel Grochowski

Molecular Dynamics Simulations of the First Steps of the Reaction Catalyzed by HIV-1 Protease
Biophys. J. 2002 83: 794-807. [Abstract] [Full Text] [PDF]  

Sharon J. Wiback and Bernhard O. Palsson

Extreme Pathway Analysis of Human Red Blood Cell Metabolism
Biophys. J. 2002 83: 808-818. [Abstract] [Full Text] [PDF]  

Hyunbum Jang, Carol K. Hall, and Yaoqi Zhou

Protein Folding Pathways and Kinetics: Molecular Dynamics Simulations of -Strand Motifs
Biophys. J. 2002 83: 819-835. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Joseph A. Gowen, Jeffrey C. Markham, Sara E. Morrison, Timothy A. Cross, David D. Busath, Eric J. Mapes, and Mark F. Schumaker

The Role of Trp Side Chains in Tuning Single Proton Conduction through Gramicidin Channels
Biophys. J. 2002 83: 880-898. [Abstract] [Full Text] [PDF]  

Silke C. Hinnah, Richard Wagner, Natalia Sveshnikova, Roswitha Harrer, and Jürgen Soll

The Chloroplast Protein Import Channel Toc75: Pore Properties and Interaction with Transit Peptides
Biophys. J. 2002 83: 899-911. [Abstract] [Full Text] [PDF]  

Gaurav Choudhary, Lisa Shang, Xiufeng Li, and Samuel C. Dudley, Jr

Energetic Localization of Saxitoxin in Its Channel Binding Site
Biophys. J. 2002 83: 912-919. [Abstract] [Full Text] [PDF]  

Nelly Bennett, Michèle Ildefonse, Frédérique Pagès, and Michel Ragno

Gating of Heteromeric Retinal Rod Channels by Cyclic AMP: Role of the C-Terminal and Pore Domains
Biophys. J. 2002 83: 920-931. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Juha M. Holopainen, Miglena I. Angelova, Tim Söderlund, and Paavo K. J. Kinnunen

Macroscopic Consequences of the Action of Phospholipase C on Giant Unilamellar Liposomes
Biophys. J. 2002 83: 932-943. [Abstract] [Full Text] [PDF]  

M. Mally, J. Majhenc, S. Svetina, and B. Zeks

Mechanisms of Equinatoxin II-Induced Transport through the Membrane of a Giant Phospholipid Vesicle
Biophys. J. 2002 83: 944-953. [Abstract] [Full Text] [PDF]  

Hongxia Zhao, Patricia M. Dubielecka, Tim Söderlund, and Paavo K. J. Kinnunen

Interactions of Adriamycin, Cytochrome c, and Serum Albumin with Lipid Monolayers Containing Poly(ethylene glycol)-Ceramide
Biophys. J. 2002 83: 954-967. [Abstract] [Full Text] [PDF]  

Paul S. Mischel, Joy A. Umbach, Sepehr Eskandari, Shane G. Smith, Cameron B. Gundersen, and Guido A. Zampighi

Nerve Growth Factor Signals via Preexisting TrkA Receptor Oligomers
Biophys. J. 2002 83: 968-976. [Abstract] [Full Text] [PDF]  

Joseph A. Szule, Nola L. Fuller, and R. Peter Rand

The Effects of Acyl Chain Length and Saturation of Diacylglycerols and Phosphatidylcholines on Membrane Monolayer Curvature
Biophys. J. 2002 83: 977-984. [Abstract] [Full Text] [PDF]  

Fu Wang, Xiao-Feng Xia, and Sen-fang Sui

Human Apolipoprotein H May Have Various Orientations When Attached to Lipid Layer
Biophys. J. 2002 83: 985-993. [Abstract] [Full Text] [PDF]  

Jörg H. Kleinschmidt and Lukas K. Tamm

Structural Transitions in Short-Chain Lipid Assemblies Studied by ³¹P-NMR Spectroscopy
Biophys. J. 2002 83: 994-1003. [Abstract] [Full Text] [PDF]  

Kevin J. Hallock, Dong-Kuk Lee, John Omnaas, Henry I. Mosberg, and A. Ramamoorthy

Membrane Composition Determines Pardaxin's Mechanism of Lipid Bilayer Disruption
Biophys. J. 2002 83: 1004-1013. [Abstract] [Full Text] [PDF]  

Juyang Huang

Exploration of Molecular Interactions in Cholesterol Superlattices: Effect of Multibody Interactions
Biophys. J. 2002 83: 1014-1025. [Abstract] [Full Text] [PDF]  

Gary Ayton, Alexander M. Smondyrev, Scott G. Bardenhagen, Patrick McMurtry, and Gregory A. Voth

Interfacing Molecular Dynamics and Macro-Scale Simulations for Lipid Bilayer Vesicles
Biophys. J. 2002 83: 1026-1038. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Andrea M. Resetar, Jacqueline M. Stephens, and Joseph M. Chalovich

Troponin-Tropomyosin: An Allosteric Switch or a Steric Blocker?
Biophys. J. 2002 83: 1039-1049. [Abstract] [Full Text] [PDF]  

Marcus G. Bell, Robert E. Dale, Uulke A. van der Heide, and Yale E. Goldman

Polarized Fluorescence Depletion Reports Orientation Distribution and Rotational Dynamics of Muscle Cross-Bridges
Biophys. J. 2002 83: 1050-1073. [Abstract] [Full Text] [PDF]  

Hiroyuki Iwamoto, Yukihiro Nishikawa, Jun'ichi Wakayama, and Tetsuro Fujisawa

Direct X-Ray Observation of a Single Hexagonal Myofilament Lattice in Native Myofibrils of Striated Muscle
Biophys. J. 2002 83: 1074-1081. [Abstract] [Full Text] [PDF]  

Natalia A. Koubassova and A. K. Tsaturyan

Direct Modeling of X-Ray Diffraction Pattern from Skeletal Muscle in Rigor
Biophys. J. 2002 83: 1082-1097. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Steven J. Koch, Alla Shundrovsky, Benjamin C. Jantzen, and Michelle D. Wang

Probing Protein-DNA Interactions by Unzipping a Single DNA Double Helix
Biophys. J. 2002 83: 1098-1105. [Abstract] [Full Text] [PDF]  

Svetlana S. Zakharova, Wim Jesse, Claude Backendorf, Stefan U. Egelhaaf, Alain Lapp, and Johan R. C. van der Maarel

Dimensions of Plectonemically Supercoiled DNA
Biophys. J. 2002 83: 1106-1118. [Abstract] [Full Text] [PDF]  

Svetlana S. Zakharova, Wim Jesse, Claude Backendorf, and Johan R. C. van der Maarel

Liquid Crystal Formation in Supercoiled DNA Solutions
Biophys. J. 2002 83: 1119-1129. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Masayuki Iwamoto, Yuji Furutani, Yuki Sudo, Kazumi Shimono, Hideki Kandori, and Naoki Kamo

Role of Asp193 in Chromophore-Protein Interaction of pharaonis Phoborhodopsin (Sensory Rhodopsin II)
Biophys. J. 2002 83: 1130-1135. [Abstract] [Full Text] [PDF]  

Yoshinori Nishioku, Masashi Nakagawa, Motoyuki Tsuda, and Masahide Terazima

Energetics and Volume Changes of the Intermediates in the Photolysis of Octopus Rhodopsin at a Physiological Temperature
Biophys. J. 2002 83: 1136-1146. [Abstract] [Full Text] [PDF]  

PROTEINS:

Peter G. Vekilov, Angela R. Feeling-Taylor, Dimiter N. Petsev, Oleg Galkin, Ronald L. Nagel, and Rhoda Elison Hirsch

Intermolecular Interactions, Nucleation, and Thermodynamics of Crystallization of Hemoglobin C
Biophys. J. 2002 83: 1147-1156. [Abstract] [Full Text] [PDF]  

Alessandro Paciaroni, Stefania Cinelli, and Giuseppe Onori

Effect of the Environment on the Protein Dynamical Transition: A Neutron Scattering Study
Biophys. J. 2002 83: 1157-1164. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Marcelo J. Kogan, Ionara Dalcol, Pau Gorostiza, Carmen Lopez-Iglesias, Ramon Pons, Miquel Pons, Fausto Sanz, and Ernest Giralt

Supramolecular Properties of the Proline-Rich -Zein N-Terminal Domain
Biophys. J. 2002 83: 1194-1204. [Abstract] [Full Text] [PDF]  

John J. Balbach, Aneta T. Petkova, Nathan A. Oyler, Oleg N. Antzutkin, David J. Gordon, Stephen C. Meredith, and Robert Tycko

Supramolecular Structure in Full-Length Alzheimer's -Amyloid Fibrils: Evidence for a Parallel -Sheet Organization from Solid-State Nuclear Magnetic Resonance
Biophys. J. 2002 83: 1205-1216. [Abstract] [Full Text] [PDF]  

Dan Endres and Adam Zlotnick

Model-Based Analysis of Assembly Kinetics for Virus Capsids or Other Spherical Polymers
Biophys. J. 2002 83: 1217-1230. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Eddy Kuwana and Eva M. Sevick-Muraca

Fluorescence Lifetime Spectroscopy in Multiply Scattering Media with Dyes Exhibiting Multiexponential Decay Kinetics
Biophys. J. 2002 83: 1165-1176. [Abstract] [Full Text] [PDF]  

Maija-Liisa Mattinen, Kimmo Pääkkönen, Teemu Ikonen, Jeremy Craven, Torbjörn Drakenberg, Ritva Serimaa, Jonathan Waltho, and Arto Annila

Quaternary Structure Built from Subunits Combining NMR and Small-Angle X-Ray Scattering Data
Biophys. J. 2002 83: 1177-1183. [Abstract] [Full Text] [PDF]  

Kirsten Bacia, Irina V. Majoul, and Petra Schwille

Probing the Endocytic Pathway in Live Cells Using Dual-Color Fluorescence Cross-Correlation Analysis
Biophys. J. 2002 83: 1184-1193. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Owen J. T. McCarty, Sameer Jadhav, Monica M. Burdick, William R. Bell, and Konstantinos Konstantopoulos

Fluid Shear Regulates the Kinetics and Molecular Mechanisms of Activation-Dependent Platelet Binding to Colon Carcinoma Cells
Biophys. J. 2002 83: 836-848. [Abstract] [Full Text] [PDF]  

Gordan Kilic

Exocytosis in Bovine Chromaffin Cells: Studies with Patch-Clamp Capacitance and FM1-43 Fluorescence
Biophys. J. 2002 83: 849-857. [Abstract] [Full Text] [PDF]  

Guillaume T. Charras and Mike A. Horton

Determination of Cellular Strains by Combined Atomic Force Microscopy and Finite Element Modeling
Biophys. J. 2002 83: 858-879. [Abstract] [Full Text] [PDF]  

BIOENERGETICS:

Rolf Brandes and Donald M. Bers

Simultaneous Measurements of Mitochondrial NADH and Ca²⁺ during Increased Work in Intact Rat Heart Trabeculae
Biophys. J. 2002 83: 587-604. [Abstract] [Full Text] [PDF]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.