BIOPHYSICAL THEORY AND MODELING:

Paul G. Dommersnes and Jean-Baptiste Fournier

The Many-Body Problem for Anisotropic Membrane Inclusions and the Self-Assembly of "Saddle" Defects into an "Egg Carton"
Biophys. J. 2002 83: 2898-2905. [Abstract] [Full Text] [PDF]  

C. E. Nordgren, D. J. Tobias, M. L. Klein, and J. K. Blasie

Molecular Dynamics Simulations of a Hydrated Protein Vectorially Oriented on Polar and Nonpolar Soft Surfaces
Biophys. J. 2002 83: 2906-2917. [Abstract] [Full Text] [PDF]  

Joseph L. Greenstein and Raimond L. Winslow

An Integrative Model of the Cardiac Ventricular Myocyte Incorporating Local Control of Ca²⁺ Release
Biophys. J. 2002 83: 2918-2945. [Abstract] [Full Text] [PDF]  

Neeti Sinha, Srinivasan Mohan, Claudia A. Lipschultz, and Sandra J. Smith-Gill

Differences in Electrostatic Properties at Antibody-Antigen Binding Sites: Implications for Specificity and Cross-Reactivity
Biophys. J. 2002 83: 2946-2968. [Abstract] [Full Text] [PDF]  

Sylvio May

Structure and Energy of Fusion Stalks: The Role of Membrane Edges
Biophys. J. 2002 83: 2969-2980. [Abstract] [Full Text] [PDF]  

Huan-Xiang Zhou

Residual Charge Interactions in Unfolded Staphylococcal Nuclease Can Be Explained by the Gaussian-Chain Model
Biophys. J. 2002 83: 2981-2986. [Abstract] [Full Text] [PDF]  

Sharron Bransburg-Zabary, Esther Nachliel, and Menachem Gutman

Gauging of the PhoE Channel by a Single Freely Diffusing Proton
Biophys. J. 2002 83: 2987-3000. [Abstract] [Full Text] [PDF]  

Sharron Bransburg-Zabary, Esther Nachliel, and Menachem Gutman

A Fast in Silico Simulation of Ion Flux through the Large-Pore Channel Proteins
Biophys. J. 2002 83: 3001-3011. [Abstract] [Full Text] [PDF]  

M. Germana Paterlini

Structure Modeling of the Chemokine Receptor CCR5: Implications for Ligand Binding and Selectivity
Biophys. J. 2002 83: 3012-3031. [Abstract] [Full Text] [PDF]  

Emanuele Paci, Michele Vendruscolo, and Martin Karplus

Validity of Go Models: Comparison with a Solvent-Shielded Empirical Energy Decomposition
Biophys. J. 2002 83: 3032-3038. [Abstract] [Full Text] [PDF]  

Miguel X. Fernandes and José García de la Torre

Brownian Dynamics Simulation of Rigid Particles of Arbitrary Shape in External Fields
Biophys. J. 2002 83: 3039-3048. [Abstract] [Full Text] [PDF]  

Céline Bret, Michel Roth, Sofie Nørager, E. Claude Hatchikian, and Martin J. Field

Molecular Dynamics Study of Desulfovibrio africanus Cytochrome c₃ in Oxidized and Reduced Forms
Biophys. J. 2002 83: 3049-3065. [Abstract] [Full Text] [PDF]  

Peter Vagedes, Wolfram Saenger, and Ernst-Walter Knapp

Driving Forces of Protein Association: The Dimer-Octamer Equilibrium in Arylsulfatase A
Biophys. J. 2002 83: 3066-3078. [Abstract] [Full Text] [PDF]  

Thomas Bickel and Robijn Bruinsma

The Nuclear Pore Complex Mystery and Anomalous Diffusion in Reversible Gels
Biophys. J. 2002 83: 3079-3087. [Abstract] [Full Text] [PDF]  

Michael W. Maddox and Marjorie L. Longo

Conformational Partitioning of the Fusion Peptide of HIV-1 gp41 and Its Structural Analogs in Bilayer Membranes
Biophys. J. 2002 83: 3088-3096. [Abstract] [Full Text] [PDF]  

Jan Saam, Emad Tajkhorshid, Shigehiko Hayashi, and Klaus Schulten

Molecular Dynamics Investigation of Primary Photoinduced Events in the Activation of Rhodopsin
Biophys. J. 2002 83: 3097-3112. [Abstract] [Full Text] [PDF]  

Maxim V. Petoukhov, Nigel A. J. Eady, Katherine A. Brown, and Dmitri I. Svergun

Addition of Missing Loops and Domains to Protein Models by X-Ray Solution Scattering
Biophys. J. 2002 83: 3113-3125. [Abstract] [Full Text] [PDF]  

Huan-Xiang Zhou

Toward the Physical Basis of Thermophilic Proteins: Linking of Enriched Polar Interactions and Reduced Heat Capacity of Unfolding
Biophys. J. 2002 83: 3126-3133. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Stefan Howorka and Hagan Bayley

Probing Distance and Electrical Potential within a Protein Pore with Tethered DNA
Biophys. J. 2002 83: 3202-3210. [Abstract] [Full Text] [PDF]  

Victor G. Romanenko, George H. Rothblat, and Irena Levitan

Modulation of Endothelial Inward-Rectifier K⁺ Current by Optical Isomers of Cholesterol
Biophys. J. 2002 83: 3211-3222. [Abstract] [Full Text] [PDF]  

Dan Gincel and Varda Shoshan-Barmatz

The Synaptic Vesicle Protein Synaptophysin: Purification and Characterization of Its Channel Activity
Biophys. J. 2002 83: 3223-3229. [Abstract] [Full Text] [PDF]  

Feliciano Protasi, Cecilia Paolini, Junichi Nakai, Kurt G. Beam, Clara Franzini-Armstrong, and Paul D. Allen

Multiple Regions of RyR1 Mediate Functional and Structural Interactions with _1S-Dihydropyridine Receptors in Skeletal Muscle
Biophys. J. 2002 83: 3230-3244. [Abstract] [Full Text] [PDF]  

Weimin Huang, Zheling Zhang, Xiaojun Han, Jilin Tang, Jianguo Wang, Shaojun Dong, and Erkang Wang

Ion Channel Behavior of Amphotericin B in Sterol-Free and Cholesterol- or Ergosterol-Containing Supported Phosphatidylcholine Bilayer Model Membranes Investigated by Electrochemistry and Spectroscopy
Biophys. J. 2002 83: 3245-3255. [Abstract] [Full Text] [PDF]  

Roger A. Bannister, Karim Melliti, and Brett A. Adams

Reconstituted Slow Muscarinic Inhibition of Neuronal (Ca_V1.2c) L-Type Ca²⁺ Channels
Biophys. J. 2002 83: 3256-3267. [Abstract] [Full Text] [PDF]  

Scott V. Adams and Louis J. DeFelice

Flux Coupling in the Human Serotonin Transporter
Biophys. J. 2002 83: 3268-3282. [Abstract] [Full Text] [PDF]  

Monica Mazzolini, Marco Punta, and Vincent Torre

Movement of the C-Helix during the Gating of Cyclic Nucleotide-Gated Channels
Biophys. J. 2002 83: 3283-3295. [Abstract] [Full Text] [PDF]  

Julia Gorelik, Yuchun Gu, Hilmar A. Spohr, Andrew I. Shevchuk, Max J. Lab, Sian E. Harding, Christopher R. W. Edwards, Michael Whitaker, Guy W. J. Moss, David C. H. Benton, Daniel Sánchez, Alberto Darszon, Igor Vodyanoy, David Klenerman, and Yuri E. Korchev

Ion Channels in Small Cells and Subcellular Structures Can Be Studied with a Smart Patch-Clamp System
Biophys. J. 2002 83: 3296-3303. [Abstract] [Full Text] [PDF]  

Alexander I. Sobolevsky, LeeAnn Rooney, and Lonnie P. Wollmuth

Staggering of Subunits in NMDAR Channels
Biophys. J. 2002 83: 3304-3314. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Karin John, Susanne Schreiber, Janek Kubelt, Andreas Herrmann, and Peter Müller

Transbilayer Movement of Phospholipids at the Main Phase Transition of Lipid Membranes: Implications for Rapid Flip-Flop in Biological Membranes
Biophys. J. 2002 83: 3315-3323. [Abstract] [Full Text] [PDF]  

Stephanie Tristram-Nagle, Yufeng Liu, Justin Legleiter, and John F. Nagle

Structure of Gel Phase DMPC Determined by X-Ray Diffraction
Biophys. J. 2002 83: 3324-3335. [Abstract] [Full Text] [PDF]  

Stephan L. Grage, Junfeng Wang, Timothy A. Cross, and Anne S. Ulrich

Solid-State ¹⁹F-NMR Analysis of ¹⁹F-Labeled Tryptophan in Gramicidin A in Oriented Membranes
Biophys. J. 2002 83: 3336-3350. [Abstract] [Full Text] [PDF]  

Wenzhi Hu, Paul R. Haddad, Kiyoshi Hasebe, Masanobu Mori, Kazuhiko Tanaka, Masako Ohno, and Naoki Kamo

Use of a Biomimetic Chromatographic Stationary Phase for Study of the Interactions Occurring between Inorganic Anions and Phosphatidylcholine Membranes
Biophys. J. 2002 83: 3351-3356. [Abstract] [Full Text] [PDF]  

Gary Ayton and Gregory A. Voth

Bridging Microscopic and Mesoscopic Simulations of Lipid Bilayers
Biophys. J. 2002 83: 3357-3370. [Abstract] [Full Text] [PDF]  

Joseph M. Johnson, Taekjip Ha, Steve Chu, and Steven G. Boxer

Early Steps of Supported Bilayer Formation Probed by Single Vesicle Fluorescence Assays
Biophys. J. 2002 83: 3371-3379. [Abstract] [Full Text] [PDF]  

Timothy V. Ratto and Marjorie L. Longo

Obstructed Diffusion in Phase-Separated Supported Lipid Bilayers: A Combined Atomic Force Microscopy and Fluorescence Recovery after Photobleaching Approach
Biophys. J. 2002 83: 3380-3392. [Abstract] [Full Text] [PDF]  

Vadim Cherezov, Jeffrey Clogston, Yohann Misquitta, Wissam Abdel-Gawad, and Martin Caffrey

Membrane Protein Crystallization In Meso: Lipid Type-Tailoring of the Cubic Phase
Biophys. J. 2002 83: 3393-3407. [Abstract] [Full Text] [PDF]  

Shui-Lin Niu and Burton J. Litman

Determination of Membrane Cholesterol Partition Coefficient Using a Lipid Vesicle-Cyclodextrin Binary System: Effect of Phospholipid Acyl Chain Unsaturation and Headgroup Composition
Biophys. J. 2002 83: 3408-3415. [Abstract] [Full Text] [PDF]  

María Laura Fanani, Steffen Härtel, Rafael G. Oliveira, and Bruno Maggio

Bidirectional Control of Sphingomyelinase Activity and Surface Topography in Lipid Monolayers
Biophys. J. 2002 83: 3416-3424. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

D. A. Martyn, P. B. Chase, M. Regnier, and A. M. Gordon

A Simple Model with Myofilament Compliance Predicts Activation-Dependent Crossbridge Kinetics in Skinned Skeletal Fibers
Biophys. J. 2002 83: 3425-3434. [Abstract] [Full Text] [PDF]  

Mu Gao, Matthias Wilmanns, and Klaus Schulten

Steered Molecular Dynamics Studies of Titin I1 Domain Unfolding
Biophys. J. 2002 83: 3435-3445. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

T. M. Okonogi, S. C. Alley, A. W. Reese, P. B. Hopkins, and B. H. Robinson

Sequence-Dependent Dynamics of Duplex DNA: The Applicability of a Dinucleotide Model
Biophys. J. 2002 83: 3446-3459. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Kenji Hiraki, Toshiaki Hamanaka, Xiang-Guo Zheng, Teturo Shinada, Jong-Moon Kim, Kazuo Yoshihara, and Yuji Kito

Bacteriorhodopsin Analog Regenerated with 13-Desmethyl-13-Iodoretinal
Biophys. J. 2002 83: 3460-3469. [Abstract] [Full Text] [PDF]  

Stéphanie Bonneau, Christine Vever-Bizet, Patrice Morlière, Jean-Claude Mazière, and Daniel Brault

Equilibrium and Kinetic Studies of the Interactions of a Porphyrin with Low-Density Lipoproteins
Biophys. J. 2002 83: 3470-3481. [Abstract] [Full Text] [PDF]  

Yuji Furutani, Masayuki Iwamoto, Kazumi Shimono, Naoki Kamo, and Hideki Kandori

FTIR Spectroscopy of the M Photointermediate in pharaonis Phoborhodopsin
Biophys. J. 2002 83: 3482-3489. [Abstract] [Full Text] [PDF]  

B. U. Klink, R. Winter, M. Engelhard, and I. Chizhov

Pressure Dependence of the Photocycle Kinetics of Bacteriorhodopsin
Biophys. J. 2002 83: 3490-3498. [Abstract] [Full Text] [PDF]  

Satoshi Habuchi, Mircea Cotlet, Johan Hofkens, Gunter Dirix, Jan Michiels, Jos Vanderleyden, Vinod Subramaniam, and Frans C. De Schryver

Resonance Energy Transfer in a Calcium Concentration-Dependent Cameleon Protein
Biophys. J. 2002 83: 3499-3506. [Abstract] [Full Text] [PDF]  

PROTEINS:

S. Nuzzo, C. Meneghini, S. Mobilioo, H. Haas, P. Riccio, A. Fasano, P. Cavatorta, and S. Morante

An X-Ray Absorption Spectroscopy Study of the Zinc Environment in Langmuir-Blodgett Phospholipid Multilayers
Biophys. J. 2002 83: 3507-3512. [Abstract] [Full Text] [PDF]  

Matthias Gralle, Michelle M. Botelho, Cristiano L. P. de Oliveira, Iris Torriani, and Sérgio T. Ferreira

Solution Studies and Structural Model of the Extracellular Domain of the Human Amyloid Precursor Protein
Biophys. J. 2002 83: 3513-3524. [Abstract] [Full Text] [PDF]  

Feng Ding, Nikolay V. Dokholyan, Sergey V. Buldyrev, H. Eugene Stanley, and Eugene I. Shakhnovich

Direct Molecular Dynamics Observation of Protein Folding Transition State Ensemble
Biophys. J. 2002 83: 3525-3532. [Abstract] [Full Text] [PDF]  

Giovanni Settanni, Trinh Xuan Hoang, Cristian Micheletti, and Amos Maritan

Folding Pathways of Prion and Doppel
Biophys. J. 2002 83: 3533-3541. [Abstract] [Full Text] [PDF]  

Tiziana Castrignanò, Giovanni Chillemi, Gabriele Varani, and Alessandro Desideri

Molecular Dynamics Simulation of the RNA Complex of a Double-Stranded RNA-Binding Domain Reveals Dynamic Features of the Intermolecular Interface and Its Hydration
Biophys. J. 2002 83: 3542-3552. [Abstract] [Full Text] [PDF]  

Markus Stübner, Christoph Hecht, and Josef Friedrich

Labeling Proteins via Hole Burning of Their Aromatic Amino Acids: Pressure Tuning Spectroscopy of BPTI
Biophys. J. 2002 83: 3553-3557. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

David Tareste, Frédéric Pincet, Eric Perez, Stéphane Rickling, Charles Mioskowski, and Luc Lebeau

Energy of Hydrogen Bonds Probed by the Adhesion of Functionalized Lipid Layers
Biophys. J. 2002 83: 3675-3681. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Hugo Lavoie, Daniel Blaudez, David Vaknin, Bernard Desbat, Benjamin M. Ocko, and Christian Salesse

eSpectroscopic and Structural Properties of Valine Gramicidin A in Monolayers at the Air-Water Interface
Biophys. J. 2002 83: 3558-3569. [Abstract] [Full Text] [PDF]  

Marc Tramier, Isabelle Gautier, Tristan Piolot, Sylvie Ravalet, Klaus Kemnitz, Jacques Coppey, Christiane Durieux, Vincent Mignotte, and Maïté Coppey-Moisan

Picosecond-Hetero-FRET Microscopy to Probe Protein-Protein Interactions in Live Cells
Biophys. J. 2002 83: 3570-3577. [Abstract] [Full Text] [PDF]  

Daniel J. Müller, Max Kessler, Filipp Oesterhelt, Clemens Möller, Dieter Oesterhelt, and Hermann Gaub

Stability of Bacteriorhodopsin -Helices and Loops Analyzed by Single-Molecule Force Spectroscopy
Biophys. J. 2002 83: 3578-3588. [Abstract] [Full Text] [PDF]  

Klaus Suhling, Jan Siegel, David Phillips, Paul M. W. French, Sandrine Lévêque-Fort, Stephen E. D. Webb, and Daniel M. Davis

Imaging the Environment of Green Fluorescent Protein
Biophys. J. 2002 83: 3589-3595. [Abstract] [Full Text] [PDF]  

Daniel Topgaard and Olle Söderman

Self-Diffusion of Nonfreezing Water in Porous Carbohydrate Polymer Systems Studied with Nuclear Magnetic Resonance
Biophys. J. 2002 83: 3596-3606. [Abstract] [Full Text] [PDF]  

Giovanna Guerrero, Micah S. Siegel, Botond Roska, Eli Loots, and Ehud Y. Isacoff

Tuning FlaSh: Redesign of the Dynamics, Voltage Range, and Color of the Genetically Encoded Optical Sensor of Membrane Potential
Biophys. J. 2002 83: 3607-3618. [Abstract] [Full Text] [PDF]  

Hongda Wang, Ralph Bash, Jiya G. Yodh, Gordon L. Hager, D. Lohr, and Stuart M. Lindsay

Glutaraldehyde Modified Mica: A New Surface for Atomic Force Microscopy of Chromatin
Biophys. J. 2002 83: 3619-3625. [Abstract] [Full Text] [PDF]  

Marc Damelin and Pamela A. Silver

In Situ Analysis of Spatial Relationships between Proteins of the Nuclear Pore Complex
Biophys. J. 2002 83: 3626-3636. [Abstract] [Full Text] [PDF]  

Wasfi Al-Azzam, Emil A. Pastrana, Yancy Ferrer, Qing Huang, Reinhard Schweitzer-Stenner, and Kai Griebenow

Structure of Poly(Ethylene Glycol)-Modified Horseradish Peroxidase in Organic Solvents: Infrared Amide I Spectral Changes upon Protein Dehydration Are Largely Caused by Protein Structural Changes and Not by Water Removal Per Se
Biophys. J. 2002 83: 3637-3651. [Abstract] [Full Text] [PDF]  

Adam Hoppe, Kenneth Christensen, and Joel A. Swanson

Fluorescence Resonance Energy Transfer-Based Stoichiometry in Living Cells
Biophys. J. 2002 83: 3652-3664. [Abstract] [Full Text] [PDF]  

Yurii G. Kuznetsov, Shoibal Datta, Natantara H. Kothari, Aaron Greenwood, Hung Fan, and Alexander McPherson

Atomic Force Microscopy Investigation of Fibroblasts Infected with Wild-Type and Mutant Murine Leukemia Virus (MuLV)
Biophys. J. 2002 83: 3665-3674. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Anushka Michailova, Franco DelPrincipe, Marcel Egger, and Ernst Niggli

Spatiotemporal Features of Ca²⁺ Buffering and Diffusion in Atrial Cardiac Myocytes with Inhibited Sarcoplasmic Reticulum
Biophys. J. 2002 83: 3134-3151. [Abstract] [Full Text] [PDF]  

Lene Oddershede, Jakob Kisbye Dreyer, Sonia Grego, Stanley Brown, and Kirstine Berg-Sørensen

The Motion of a Single Molecule, the -Receptor, in the Bacterial Outer Membrane
Biophys. J. 2002 83: 3152-3161. [Abstract] [Full Text] [PDF]  

Yiider Tseng, Thomas P. Kole, and Denis Wirtz

Micromechanical Mapping of Live Cells by Multiple-Particle-Tracking Microrheology
Biophys. J. 2002 83: 3162-3176. [Abstract] [Full Text] [PDF]  

Qiaoqiao Ruan, Yan Chen, Enrico Gratton, Michael Glaser, and William W. Mantulin

Cellular Characterization of Adenylate Kinase and Its Isoform: Two-Photon Excitation Fluorescence Imaging and Fluorescence Correlation Spectroscopy
Biophys. J. 2002 83: 3177-3187. [Abstract] [Full Text] [PDF]  

Jonathan E. Frank, Vladislav Markin, and Fernán Jaramillo

Characterization of Adaptation Motors in Saccular Hair Cells by Fluctuation Analysis
Biophys. J. 2002 83: 3188-3201. [Abstract] [Full Text] [PDF]  

BIOENERGETICS:

Vladimir P. Shinkarev, Boris Zybailov, Ilya R. Vassiliev, and John H. Golbeck

Modeling of the P700⁺ Charge Recombination Kinetics with Phylloquinone and Plastoquinone-9 in the A₁ Site of Photosystem I
Biophys. J. 2002 83: 2885-2897. [Abstract] [Full Text] [PDF]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.