BIOPHYSICAL THEORY AND MODELING:

David Keller, David Swigon, and Carlos Bustamante

Relating Single-Molecule Measurements to Thermodynamics
Biophys. J. 2003 84: 733-738. [Abstract] [Full Text] [PDF]  

Mark Ospeck, Xiao-xia Dong, and Kuni H. Iwasa

Limiting Frequency of the Cochlear Amplifier Based on Electromotility of Outer Hair Cells
Biophys. J. 2003 84: 739-749. [Abstract] [Full Text] [PDF]  

M. Wojciechowski, T. Grycuk, J. M. Antosiewicz, and B. Lesyng

Prediction of Secondary Ionization of the Phosphate Group in Phosphotyrosine Peptides
Biophys. J. 2003 84: 750-756. [Abstract] [Full Text] [PDF]  

E. N. Cytrynbaum, J. M. Scholey, and A. Mogilner

A Force Balance Model of Early Spindle Pole Separation in Drosophila Embryos
Biophys. J. 2003 84: 757-769. [Abstract] [Full Text] [PDF]  

R. Murugan

Competitive Model on Denaturant-Mediated Protein Unfolding
Biophys. J. 2003 84: 770-774. [Abstract] [Full Text] [PDF]  

Young Min Rhee and Vijay S. Pande

Multiplexed-Replica Exchange Molecular Dynamics Method for Protein Folding Simulation
Biophys. J. 2003 84: 775-786. [Abstract] [Full Text] [PDF]  

A. M. Berezhkovskii and I. V. Gopich

Translocation of Rodlike Polymers through Membrane Channels
Biophys. J. 2003 84: 787-793. [Abstract] [Full Text] [PDF]  

Nathan D. Price, Jennifer L. Reed, Jason A. Papin, Iman Famili, and Bernhard O. Palsson

Analysis of Metabolic Capabilities Using Singular Value Decomposition of Extreme Pathway Matrices
Biophys. J. 2003 84: 794-804. [Abstract] [Full Text] [PDF]  

Alex Kentsis, Mihaly Mezei, and Roman Osman

MC-PHS: A Monte Carlo Implementation of the Primary Hydration Shell for Protein Folding and Design
Biophys. J. 2003 84: 805-815. [Abstract] [Full Text] [PDF]  

Ching-Hsing Yu, Samuel Cukierman, and Régis Pomès

Theoretical Study of the Structure and Dynamic Fluctuations of Dioxolane-Linked Gramicidin Channels
Biophys. J. 2003 84: 816-831. [Abstract] [Full Text] [PDF]  

Sandeep V. Pandit, Wayne R. Giles, and Semahat S. Demir

A Mathematical Model of the Electrophysiological Alterations in Rat Ventricular Myocytes in Type-I Diabetes
Biophys. J. 2003 84: 832-841. [Abstract] [Full Text] [PDF]  

Frank L. H. Brown

Regulation of Protein Mobility via Thermal Membrane Undulations
Biophys. J. 2003 84: 842-853. [Abstract] [Full Text] [PDF]  

Michael Grabe, John Neu, George Oster, and Peter Nollert

Protein Interactions and Membrane Geometry
Biophys. J. 2003 84: 854-868. [Abstract] [Full Text] [PDF]  

J. L. Klepeis, M. J. Pieja, and C. A. Floudas

Hybrid Global Optimization Algorithms for Protein Structure Prediction: Alternating Hybrids
Biophys. J. 2003 84: 869-882. [Abstract] [Full Text] [PDF]  

Michal Pribyl, Cyrill B. Muratov, and Stanislav Y. Shvartsman

Long-Range Signal Transmission in Autocrine Relays
Biophys. J. 2003 84: 883-896. [Abstract] [Full Text] [PDF]  

John Jeremy Rice, Gustavo Stolovitzky, Yuhai Tu, and Pieter P. de Tombe

Ising Model of Cardiac Thin Filament Activation with Nearest-Neighbor Cooperative Interactions
Biophys. J. 2003 84: 897-909. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

H. Sackin, A. Vasilyev, L. G. Palmer, and M. Krambis

Permeant Cations and Blockers Modulate pH Gating of ROMK Channels
Biophys. J. 2003 84: 910-921. [Abstract] [Full Text] [PDF]  

J. Ashot Kozak and Michael D. Cahalan

MIC Channels Are Inhibited by Internal Divalent Cations but Not ATP
Biophys. J. 2003 84: 922-927. [Abstract] [Full Text] [PDF]  

Mohammad Shahidullah and Manuel Covarrubias

The Link between Ion Permeation and Inactivation Gating of Kv4 Potassium Channels
Biophys. J. 2003 84: 928-941. [Abstract] [Full Text] [PDF]  

Chris A. Ahern, David. C. Sheridan, Weijun Cheng, Lindsay Mortenson, Priya Nataraj, Paul Allen, Michel De Waard, and Roberto Coronado

Ca²⁺ Current and Charge Movements in Skeletal Myotubes Promoted by the ß-Subunit of the Dihydropyridine Receptor in the Absence of Ryanodine Receptor Type 1
Biophys. J. 2003 84: 942-959. [Abstract] [Full Text] [PDF]  

Vladislav Bergo, Sergey Mamaev, Jerzy Olejnik, and Kenneth J. Rothschild

Methionine Changes in Bacteriorhodopsin Detected by FTIR and Cell-Free Selenomethionine Substitution
Biophys. J. 2003 84: 960-966. [Abstract] [Full Text] [PDF]  

Stephen Winters-Hilt, Wenonah Vercoutere, Veronica S. DeGuzman, David Deamer, Mark Akeson, and David Haussler

Highly Accurate Classification of Watson-Crick Basepairs on Termini of Single DNA Molecules
Biophys. J. 2003 84: 967-976. [Abstract] [Full Text] [PDF]  

Igor I. Pottosin and Manuel Martínez-Estévez

Regulation of the Fast Vacuolar Channel by Cytosolic and Vacuolar Potassium
Biophys. J. 2003 84: 977-986. [Abstract] [Full Text] [PDF]  

MEMBRANES:

Thomas Nyholm, Matts Nylund, Annu Söderholm, and J. Peter Slotte

Properties of Palmitoyl Phosphatidylcholine, Sphingomyelin, and Dihydrosphingomyelin Bilayer Membranes as Reported by Different Fluorescent Reporter Molecules
Biophys. J. 2003 84: 987-997. [Abstract] [Full Text] [PDF]  

Scott D. Shoemaker and T. Kyle Vanderlick

Material Studies of Lipid Vesicles in the L and L-Gel Coexistence Regimes
Biophys. J. 2003 84: 998-1009. [Abstract] [Full Text] [PDF]  

Gregor Cevc and Dieter Gebauer

Hydration-Driven Transport of Deformable Lipid Vesicles through Fine Pores and the Skin Barrier
Biophys. J. 2003 84: 1010-1024. [Abstract] [Full Text] [PDF]  

Rosa Bartucci, Rita Guzzi, Derek Marsh, and Luigi Sportelli

Intramembrane Polarity by Electron Spin Echo Spectroscopy of Labeled Lipids
Biophys. J. 2003 84: 1025-1030. [Abstract] [Full Text] [PDF]  

Steffen Serowy, Sapar M. Saparov, Yuri N. Antonenko, Wladas Kozlovsky, Volker Hagen, and Peter Pohl

Structural Proton Diffusion along Lipid Bilayers
Biophys. J. 2003 84: 1031-1037. [Abstract] [Full Text] [PDF]  

David A. Mannock, Thomas J. McIntosh, Xin Jiang, Douglas F. Covey, and Ronald N. McElhaney

Effects of Natural and Enantiomeric Cholesterol on the Thermotropic Phase Behavior and Structure of Egg Sphingomyelin Bilayer Membranes
Biophys. J. 2003 84: 1038-1046. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Andras Muhlrad, Y. Michael Peyser, Mahta Nili, Katalin Ajtai, Emil Reisler, and Thomas P. Burghardt

Chemical Decoupling of ATPase Activation and Force Production from the Contractile Cycle in Myosin by Steric Hindrance of Lever-Arm Movement
Biophys. J. 2003 84: 1047-1056. [Abstract] [Full Text] [PDF]  

Christopher Sheldahl, Jun Xing, Wen-Ji Dong, Stephen C. Harvey, and Herbert C. Cheung

The Calcium-Saturated cTnI/cTnC Complex: Structure of the Inhibitory Region of cTnI
Biophys. J. 2003 84: 1057-1064. [Abstract] [Full Text] [PDF]  

R. P. Schuhmeier, B. Dietze, D. Ursu, F. Lehmann-Horn, and W. Melzer

Voltage-Activated Calcium Signals in Myotubes Loaded with High Concentrations of EGTA
Biophys. J. 2003 84: 1065-1078. [Abstract] [Full Text] [PDF]  

Pierre Tijskens, Gerhard Meissner, and Clara Franzini-Armstrong

Location of Ryanodine and Dihydropyridine Receptors in Frog Myocardium
Biophys. J. 2003 84: 1079-1092. [Abstract] [Full Text] [PDF]  

Naoto Yagi

An X-Ray Diffraction Study on Early Structural Changes in Skeletal Muscle Contraction
Biophys. J. 2003 84: 1093-1102. [Abstract] [Full Text] [PDF]  

Kenji Kawaguchi, Sotaro Uemura, and Shin'ichi Ishiwata

Equilibrium and Transition between Single- and Double-Headed Binding of Kinesin as Revealed by Single-Molecule Mechanics
Biophys. J. 2003 84: 1103-1113. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

Chad S. Braun, Gouri S. Jas, Sirirat Choosakoonkriang, Gary S. Koe, Janet G. Smith, and C. Russell Middaugh

The Structure of DNA within Cationic Lipid/DNA Complexes
Biophys. J. 2003 84: 1114-1123. [Abstract] [Full Text] [PDF]  

Vladimir S. Trubetskoy, Jon A. Wolff, and Vladimir G. Budker

The Role of a Microscopic Colloidally Stabilized Phase in Solubilizing Oligoamine-Condensed DNA Complexes
Biophys. J. 2003 84: 1124-1130. [Abstract] [Full Text] [PDF]  

Laurence M. Edelman, Raymond Cheong, and Jason D. Kahn

Fluorescence Resonance Energy Transfer over 130 Basepairs in Hyperstable Lac Repressor-DNA Loops
Biophys. J. 2003 84: 1131-1145. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Alexander O. Goushcha, Anthony J. Manzo, Gary W. Scott, Leonid N. Christophorov, Peter P. Knox, Yuri M. Barabash, Marina T. Kapoustina, Natalja M. Berezetska, and Valery N. Kharkyanen

Self-Regulation Phenomena Applied to Bacterial Reaction Centers: 2. Nonequilibrium Adiabatic Potential: Dark and Light Conformations Revisited
Biophys. J. 2003 84: 1146-1160. [Abstract] [Full Text] [PDF]  

Jakub Psencík, Ying-Zhong Ma, Juan B. Arellano, Jan Hála, and Tomas Gillbro

Excitation Energy Transfer Dynamics and Excited-State Structure in Chlorosomes of Chlorobium phaeobacteroides
Biophys. J. 2003 84: 1161-1179. [Abstract] [Full Text] [PDF]  

Johnny Hendriks, Ivo H. M. van Stokkum, and Klaas J. Hellingwerf

Deuterium Isotope Effects in the Photocycle Transitions of the Photoactive Yellow Protein
Biophys. J. 2003 84: 1180-1191. [Abstract] [Full Text] [PDF]  

Tilman Kottke, Joachim Heberle, Dominic Hehn, Bernhard Dick, and Peter Hegemann

Phot-LOV1: Photocycle of a Blue-Light Receptor Domain from the Green Alga Chlamydomonas reinhardtii
Biophys. J. 2003 84: 1192-1201. [Abstract] [Full Text] [PDF]  

György Váró, Leonid S. Brown, Melinda Lakatos, and Janos K. Lanyi

Characterization of the Photochemical Reaction Cycle of Proteorhodopsin
Biophys. J. 2003 84: 1202-1207. [Abstract] [Full Text] [PDF]  

Michael Hein, Ansgar A. Wegener, Martin Engelhard, and Friedrich Siebert

Time-Resolved FTIR Studies of Sensory Rhodopsin II (NpSRII) from Natronobacterium pharaonis: Implications for Proton Transport and Receptor Activation
Biophys. J. 2003 84: 1208-1217. [Abstract] [Full Text] [PDF]  

PROTEINS:

Emmanuel Saridakis and Naomi E. Chayen

Systematic Improvement of Protein Crystals by Determining the Supersolubility Curves of Phase Diagrams
Biophys. J. 2003 84: 1218-1222. [Abstract] [Full Text] [PDF]  

Anaika B. Sibley, Monique Cosman, and V. V. Krishnan

An Empirical Correlation between Secondary Structure Content and Averaged Chemical Shifts in Proteins
Biophys. J. 2003 84: 1223-1227. [Abstract] [Full Text] [PDF]  

Tzu-Ping Ko, Howard Robinson, Yi-Gui Gao, Chi-Hing C. Cheng, Arthur L. DeVries, and Andrew H.-J. Wang

The Refined Crystal Structure of an Eel Pout Type III Antifreeze Protein RD1 at 0.62-Å Resolution Reveals Structural Microheterogeneity of Protein and Solvation
Biophys. J. 2003 84: 1228-1237. [Abstract] [Full Text] [PDF]  

Rinku Majumder, Jianfang Wang, and Barry R. Lentz

Effects of Water Soluble Phosphotidylserine on Bovine Factor X_a: Functional and Structural Changes Plus Dimerization
Biophys. J. 2003 84: 1238-1251. [Abstract] [Full Text] [PDF]  

Feiya Li, Sambra D. Redick, Harold P. Erickson, and Vincent T. Moy

Force Measurements of the ₅ß₁ Integrin–Fibronectin Interaction
Biophys. J. 2003 84: 1252-1262. [Abstract] [Full Text] [PDF]  

Wei Liu, Evan Crocker, David J. Siminovitch, and Steven O. Smith

Role of Side-Chain Conformational Entropy in Transmembrane Helix Dimerization of Glycophorin A
Biophys. J. 2003 84: 1263-1271. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Gabor Forgacs, Stuart A. Newman, Bernhard Hinner, Christian W. Maier, and Erich Sackmann

Assembly of Collagen Matrices as a Phase Transition Revealed by Structural and Rheologic Studies
Biophys. J. 2003 84: 1272-1280. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Elena M. Filippova, Denise C. Monteleone, John G. Trunk, Betsy M. Sutherland, Stephen R. Quake, and John C. Sutherland

Quantifying Double-Strand Breaks and Clustered Damages in DNA by Single-Molecule Laser Fluorescence Sizing
Biophys. J. 2003 84: 1281-1290. [Abstract] [Full Text] [PDF]  

Jiangang Shen, Nadeem Khan, Lionel D. Lewis, Ray Armand, Oleg Grinberg, Eugene Demidenko, and Harold Swartz

Oxygen Consumption Rates and Oxygen Concentration in Molt-4 Cells and Their mtDNA Depleted (⁰) Mutants
Biophys. J. 2003 84: 1291-1298. [Abstract] [Full Text] [PDF]  

R. J. Walsh, T. Reinot, J. M. Hayes, K. R. Kalli, L. C. Hartmann, and G. J. Small

Carcinoma and SV40-Transfected Normal Ovarian Surface Epithelial Cell Comparison by Nonphotochemical Hole Burning
Biophys. J. 2003 84: 1299-1307. [Abstract] [Full Text] [PDF]  

Erwin J. G. Peterman, Frederick Gittes, and Christoph F. Schmidt

Laser-Induced Heating in Optical Traps
Biophys. J. 2003 84: 1308-1316. [Abstract] [Full Text] [PDF]  

Xunbin Wei, Vanessa G. Henke, Carsten Strübing, Edward B. Brown, and David E. Clapham

Real-Time Imaging of Nuclear Permeation by EGFP in Single Intact Cells
Biophys. J. 2003 84: 1317-1327. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

Mark F. Coughlin and Dimitrije Stamenovic

A Prestressed Cable Network Model of the Adherent Cell Cytoskeleton
Biophys. J. 2003 84: 1328-1336. [Abstract] [Full Text] [PDF]  

Bhanu P. Jena, Sang-Joon Cho, Aleksandar Jeremic, Marvin H. Stromer, and Rania Abu-Hamdah

Structure and Composition of the Fusion Pore
Biophys. J. 2003 84: 1337-1343. [Abstract] [Full Text] [PDF]  

Wolfgang Singer, Manfred Frick, Thomas Haller, Stefan Bernet, Monika Ritsch-Marte, and Paul Dietl

Mechanical Forces Impeding Exocytotic Surfactant Release Revealed by Optical Tweezers
Biophys. J. 2003 84: 1344-1351. [Abstract] [Full Text] [PDF]  

BIOENERGETICS:

Paul W. Chun

Molecular-Level Thermodynamic Switch Controls Chemical Equilibrium in Sequence-Specific Hydrophobic Interaction of 35 Dipeptide Pairs
Biophys. J. 2003 84: 1352-1369. [Abstract] [Full Text] [PDF]  

Pavel Pospísil, Haumann Michael, Jens Dittmer, V. Armando Solé, and Holger Dau

Stepwise Transition of the Tetra-Manganese Complex of Photosystem II to a Binuclear Mn₂(µ-O)₂ Complex in Response to a Temperature Jump: A Time-Resolved Structural Investigation Employing X-Ray Absorption Spectroscopy
Biophys. J. 2003 84: 1370-1386. [Abstract] [Full Text] [PDF]  

ELECTROPHYSIOLOGY:

Laura Zonia and José A. Feijó

State and Spectral Properties of Chloride Oscillations in Pollen
Biophys. J. 2003 84: 1387-1398. [Abstract] [Full Text] [PDF]  

Carmen Müllner, Daniel Yakubovich, Carmen W. Dessauer, Dieter Platzer, and Wolfgang Schreibmayer

Single Channel Analysis of the Regulation of GIRK1/GIRK4 Channels by Protein Phosphorylation
Biophys. J. 2003 84: 1399-1409. [Abstract] [Full Text] [PDF]  

LETTERS TO THE EDITOR:

Hong Qian

Amplifying Signal Transduction Specificity without Multiple Phosphorylation
Biophys. J. 2003 84: 1410-1411. [Full Text] [PDF]  

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