BIOPHYSICAL THEORY AND MODELING:

Shixiang Yan, Min Wu, Dinshaw J. Patel, Nicholas E. Geacintov, and Suse Broyde

Simulating Structural and Thermodynamic Properties of Carcinogen-Damaged DNA
Biophys. J. 2003 84: 2137-2148. [Abstract] [Full Text] [PDF] [Figure]  

George Moraitakis and Julia M. Goodfellow

Simulations of Human Lysozyme: Probing the Conformations Triggering Amyloidosis
Biophys. J. 2003 84: 2149-2158. [Abstract] [Full Text] [PDF]  

Toby W. Allen, Turgut Bastug, Serdar Kuyucak, and Shin-Ho Chung

Gramicidin A Channel as a Test Ground for Molecular Dynamics Force Fields
Biophys. J. 2003 84: 2159-2168. [Abstract] [Full Text] [PDF]  

J. Alfredo Freites, Yunsoo Choi, and Douglas J. Tobias

Molecular Dynamics Simulations of a Pulmonary Surfactant Protein B Peptide in a Lipid Monolayer
Biophys. J. 2003 84: 2169-2180. [Abstract] [Full Text] [PDF]  

Ron Amir and Marshall Devor

Electrical Excitability of the Soma of Sensory Neurons Is Required for Spike Invasion of the Soma, but Not for Through-Conduction
Biophys. J. 2003 84: 2181-2191. [Abstract] [Full Text] [PDF]  

Christofer Hofsäß, Erik Lindahl, and Olle Edholm

Molecular Dynamics Simulations of Phospholipid Bilayers with Cholesterol
Biophys. J. 2003 84: 2192-2206. [Abstract] [Full Text] [PDF]  

M. Sulpizi, U. Rothlisberger, and P. Carloni

Molecular Dynamics Studies of Caspase-3
Biophys. J. 2003 84: 2207-2215. [Abstract] [Full Text] [PDF]  

Huan-Xiang Zhou and Feng Dong

Electrostatic Contributions to the Stability of a Thermophilic Cold Shock Protein
Biophys. J. 2003 84: 2216-2222. [Abstract] [Full Text] [PDF]  

M. V. Bayas, K. Schulten, and D. Leckband

Forced Detachment of the CD2-CD58 Complex
Biophys. J. 2003 84: 2223-2233. [Abstract] [Full Text] [PDF]  

Kaihsu Tai, Stephen D. Bond, Hugh R. MacMillan, Nathan Andrew Baker, Michael Jay Holst, and J. Andrew McCammon

Finite Element Simulations of Acetylcholine Diffusion in Neuromuscular Junctions
Biophys. J. 2003 84: 2234-2241. [Abstract] [Full Text] [PDF]  

Assaf Zemel, Deborah R. Fattal, and Avinoam Ben-Shaul

Energetics and Self-Assembly of Amphipathic Peptide Pores in Lipid Membranes
Biophys. J. 2003 84: 2242-2255. [Abstract] [Full Text] [PDF]  

Takuya Takahashi and Serdar Kuyucak

Functional Properties of Threefold and Fourfold Channels in Ferritin Deduced from Electrostatic Calculations
Biophys. J. 2003 84: 2256-2263. [Abstract] [Full Text] [PDF]  

Eva K. Freyhult, Karl Andersson, and Mats G. Gustafsson

Structural Modeling Extends QSAR Analysis of Antibody-Lysozyme Interactions to 3D-QSAR
Biophys. J. 2003 84: 2264-2272. [Abstract] [Full Text] [PDF]  

Thomas M. Frimurer, Günther H. Peters, Lars F. Iversen, Henrik S. Andersen, Niels Peter H. Møller, and Ole H. Olsen

Ligand-Induced Conformational Changes: Improved Predictions of Ligand Binding Conformations and Affinities
Biophys. J. 2003 84: 2273-2281. [Abstract] [Full Text] [PDF]  

CHANNELS, RECEPTORS, AND TRANSPORTERS:

Giovanni Settanni, Antonino Cattaneo, and Paolo Carloni

Molecular Dynamics Simulations of the NGF-TrkA Domain 5 Complex and Comparison with Biological Data
Biophys. J. 2003 84: 2282-2292. [Abstract] [Full Text] [PDF]  

Hubert H. Kerschbaum, J. Ashot Kozak, and Michael D. Cahalan

Polyvalent Cations as Permeant Probes of MIC and TRPM7 Pores
Biophys. J. 2003 84: 2293-2305. [Abstract] [Full Text] [PDF]  

Simon Hebeisen, Hannelore Heidtmann, Diego Cosmelli, Carlos Gonzalez, Barbara Poser, Ramon Latorre, Osvaldo Alvarez, and Christoph Fahlke

Anion Permeation in Human ClC-4 Channels
Biophys. J. 2003 84: 2306-2318. [Abstract] [Full Text] [PDF]  

Gina Sánchez, Cecilia Hidalgo, and Paulina Donoso

Kinetic Studies of Calcium-Induced Calcium Release in Cardiac Sarcoplasmic Reticulum Vesicles
Biophys. J. 2003 84: 2319-2330. [Abstract] [Full Text] [PDF]  

Giorgio Colombo, Siewert Jan Marrink, and Alan E. Mark

Simulation of MscL Gating in a Bilayer under Stress
Biophys. J. 2003 84: 2331-2337. [Abstract] [Full Text] [PDF]  

David C. Reeves, Muhammed F. R. Sayed, Pak-Lee Chau, Kerry L. Price, and Sarah C. R. Lummis

Prediction of 5-HT₃ Receptor Agonist-Binding Residues Using Homology Modeling
Biophys. J. 2003 84: 2338-2334. [Abstract] [Full Text] [PDF]  

Charlotte E. Capener, Peter Proks, Frances M. Ashcroft, and Mark S. P. Sansom

Filter Flexibility in a Mammalian K Channel: Models and Simulations of Kir6.2 Mutants
Biophys. J. 2003 84: 2345-2356. [Abstract] [Full Text] [PDF]  

George Shapovalov, Randal Bass, Douglas C. Rees, and Henry A. Lester

Open-State Disulfide Crosslinking between Mycobacterium tuberculosis Mechanosensitive Channel Subunits
Biophys. J. 2003 84: 2357-2365. [Abstract] [Full Text] [PDF]  

Mark Bates, Michael Burns, and Amit Meller

Dynamics of DNA Molecules in a Membrane Channel Probed by Active Control Techniques
Biophys. J. 2003 84: 2366-2372. [Abstract] [Full Text] [PDF]  

MEMBRANES:

V. Chupin, J. A. Killian, and B. de Kruijff

Effect of Phospholipids and a Transmembrane Peptide on the Stability of the Cubic Phase of Monoolein: Implication for Protein Crystalization from a Cubic Phase
Biophys. J. 2003 84: 2373-2381. [Abstract] [Full Text] [PDF]  

Boyan B. Bonev, Yuen-Han Lam, Gregor Anderluh, Anthony Watts, Raymond S. Norton, and Frances Separovic

Effects of the Eukaryotic Pore-Forming Cytolysin Equinatoxin II on Lipid Membranes and the Role of Sphingomyelin
Biophys. J. 2003 84: 2382-2392. [Abstract] [Full Text] [PDF]  

Songyan Zheng, Joseph Strzalka, David H. Jones, Stanley J. Opella, and J. Kent Blasie

Comparative Structural Studies of Vpu Peptides in Phospholipid Monolayers by X-Ray Scattering
Biophys. J. 2003 84: 2393-2415. [Abstract] [Full Text] [PDF]  

Pierre Charnet, Gérard Molle, Didier Marion, Matthieu Rousset, and Valérie Lullien-Pellerin

Puroindolines Form Ion Channels in Biological Membranes
Biophys. J. 2003 84: 2416-2426. [Abstract] [Full Text] [PDF]  

V. P. Ivanova, I. M. Makarov, T. E. Schäffer, and T. Heimburg

Analyzing Heat Capacity Profiles of Peptide-Containing Membranes: Cluster Formation of Gramicidin A
Biophys. J. 2003 84: 2427-2439. [Abstract] [Full Text] [PDF]  

MUSCLE AND CONTRACTILITY:

Osha Roopnarine

Mechanical Defects of Muscle Fibers with Myosin Light Chain Mutants that Cause Cardiomyopathy
Biophys. J. 2003 84: 2440-2449. [Abstract] [Full Text] [PDF]  

J. Borejdo and I. Akopova

Orientational Changes of Crossbridges During Single Turnover of ATP
Biophys. J. 2003 84: 2450-2459. [Abstract] [Full Text] [PDF]  

NUCLEIC ACIDS:

R. Ahmad, H. Arakawa, and H. A. Tajmir-Riahi

A Comparative Study of DNA Complexation with Mg(II) and Ca(II) in Aqueous Solution: Major and Minor Grooves Bindings
Biophys. J. 2003 84: 2460-2466. [Abstract] [Full Text] [PDF]  

Roee Amit, Amos B. Oppenheim, and Joel Stavans

Increased Bending Rigidity of Single DNA Molecules by H-NS, a Temperature and Osmolarity Sensor
Biophys. J. 2003 84: 2467-2473. [Abstract] [Full Text] [PDF]  

PHOTOBIOPHYSICS:

Roman Fedorov, Ilme Schlichting, Elisabeth Hartmann, Tatjana Domratcheva, Markus Fuhrmann, and Peter Hegemann

Crystal Structures and Molecular Mechanism of a Light-Induced Signaling Switch: The Phot-LOV1 Domain from Chlamydomonas reinhardtii
Biophys. J. 2003 84: 2474-2482. [Abstract] [Full Text] [PDF]  

Amalia Stamouli, Sidig Kafi, Dionne C. G. Klein, Tjerk H. Oosterkamp, Joost W. M. Frenken, Richard J. Cogdell, and Thijs J. Aartsma

The Ring Structure and Organization of Light Harvesting 2 Complexes in a Reconstituted Lipid Bilayer, Resolved by Atomic Force Microscopy
Biophys. J. 2003 84: 2483-2491. [Abstract] [Full Text] [PDF]  

Judy E. Kim, Michael J. Tauber, and Richard A. Mathies

Analysis of the Mode-Specific Excited-State Energy Distribution and Wavelength-Dependent Photoreaction Quantum Yield in Rhodopsin
Biophys. J. 2003 84: 2492-2501. [Abstract] [Full Text] [PDF]  

Liangmin Zhang, Tingying Zeng, Kristie Cooper, and Richard O. Claus

High-Performance Photovoltaic Behavior of Oriented Purple Membrane Polymer Composite Films
Biophys. J. 2003 84: 2502-2507. [Abstract] [Full Text] [PDF]  

Roberta Croce, Marc G. Müller, Roberto Bassi, and Alfred R. Holzwarth

Chlorophyll b to Chlorophyll a Energy Transfer Kinetics in the CP29 Antenna Complex: A Comparative Femtosecond Absorption Study between Native and Reconstituted Proteins
Biophys. J. 2003 84: 2508-2516. [Abstract] [Full Text] [PDF]  

Roberta Croce, Marc G. Müller, Stefano Caffarri, Roberto Bassi, and Alfred R. Holzwarth

Energy Transfer Pathways in the Minor Antenna Complex CP29 of Photosystem II: A Femtosecond Study of Carotenoid to Chlorophyll Transfer on Mutant and WT Complexes
Biophys. J. 2003 84: 2517-2532. [Abstract] [Full Text] [PDF]  

PROTEINS:

C. Czeslik, C. Royer, T. Hazlett, and W. Mantulin

Reorientational Dynamics of Enzymes Adsorbed on Quartz: A Temperature-Dependent Time-Resolved TIRF Anisotropy Study
Biophys. J. 2003 84: 2533-2541. [Abstract] [Full Text] [PDF]  

Monique Laberge, Qing Huang, Reinhard Schweitzer-Stenner, and Judit Fidy

The Endogenous Calcium Ions of Horseradish Peroxidase C Are Required to Maintain the Functional Nonplanarity of the Heme
Biophys. J. 2003 84: 2542-2552. [Abstract] [Full Text] [PDF]  

Alessandro Pintar, Oliviero Carugo, and Sándor Pongor

Atom Depth as a Descriptor of the Protein Interior
Biophys. J. 2003 84: 2553-2561. [Abstract] [Full Text] [PDF]  

SUPRAMOLECULAR ASSEMBLIES:

Christopher A. MacRaild, Danny M. Hatters, Lynne J. Lawrence, and Geoffrey J. Howlett

Sedimentation Velocity Analysis of Flexible Macromolecules: Self-Association and Tangling of Amyloid Fibrils
Biophys. J. 2003 84: 2562-2569. [Abstract] [Full Text] [PDF]  

Stéphanie Mangenot, Amélie Leforestier, Dominique Durand, and Françoise Livolant

X-Ray Diffraction Characterization of the Dense Phases Formed by Nucleosome Core Particles
Biophys. J. 2003 84: 2570-2584. [Abstract] [Full Text] [PDF]  

Carolyn M. Teschke, Amy McGough, and Pamela A. Thuman-Commike

Penton Release from P22 Heat-Expanded Capsids Suggests Importance of Stabilizing Penton-Hexon Interactions during Capsid Maturation
Biophys. J. 2003 84: 2585-2592. [Abstract] [Full Text] [PDF]  

Thomas Gutsmann, Georg E. Fantner, Manuela Venturoni, Axel Ekani-Nkodo, James B. Thompson, Johannes H. Kindt, Daniel E. Morse, Deborah Kuchnir Fygenson, and Paul K. Hansma

Evidence that Collagen Fibrils in Tendons Are Inhomogeneously Structured in a Tubelike Manner
Biophys. J. 2003 84: 2593-2598. [Abstract] [Full Text] [PDF]  

SPECTROSCOPY, IMAGING, OTHER TECHNIQUES:

Hartmut Schmidt, Edward B. Brown, Beat Schwaller, and Jens Eilers

Diffusional Mobility of Parvalbumin in Spiny Dendrites of Cerebellar Purkinje Neurons Quantified by Fluorescence Recovery after Photobleaching
Biophys. J. 2003 84: 2599-2608. [Abstract] [Full Text] [PDF]  

Fuyuki Tokumasu, Albert J. Jin, Gerald W. Feigenson, and James A. Dvorak

Nanoscopic Lipid Domain Dynamics Revealed by Atomic Force Microscopy
Biophys. J. 2003 84: 2609-2618. [Abstract] [Full Text] [PDF]  

Antonio J. Costa-Filho, Yuhei Shimoyama, and Jack H. Freed

A 2D-ELDOR Study of the Liquid Ordered Phase in Multilamellar Vesicle Membranes
Biophys. J. 2003 84: 2619-2633. [Abstract] [Full Text] [PDF]  

CELL BIOPHYSICS:

G. V. Soni, B. M. Jaffar Ali, Y. Hatwalne, and G. V. Shivashankar

Single Particle Tracking of Correlated Bacterial Dynamics
Biophys. J. 2003 84: 2634-2637. [Abstract] [Full Text] [PDF]  

Maciej Zborowski, Graciela R. Ostera, Lee R. Moore, Sarah Milliron, Jeffrey J. Chalmers, and Alan N. Schechter

Red Blood Cell Magnetophoresis
Biophys. J. 2003 84: 2638-2645. [Abstract] [Full Text] [PDF]  

Martyn P. Mahaut-Smith, David Thomas, Alex B. Higham, Juliet A. Usher-Smith, Jamila F. Hussain, Juan Martinez-Pinna, Jeremy N. Skepper, and Michael J. Mason

Properties of the Demarcation Membrane System in Living Rat Megakaryocytes
Biophys. J. 2003 84: 2646-2654. [Abstract] [Full Text] [PDF] [Supplemental File]  

Claudio F. Perez, Andrew Voss, Isaac N. Pessah, and Paul D. Allen

RyR1/RyR3 Chimeras Reveal that Multiple Domains of RyR1 Are Involved in Skeletal-Type E-C Coupling
Biophys. J. 2003 84: 2655-2663. [Abstract] [Full Text] [PDF]  

Fuminori Takahashi, Yukako Higashino, and Hidetake Miyata

Probing the Cell Peripheral Movements by Optical Trapping Technique
Biophys. J. 2003 84: 2664-2670. [Abstract] [Full Text] [PDF]  

Sujata K. Bhatia, Michael R. King, and Daniel A. Hammer

The State Diagram for Cell Adhesion Mediated by Two Receptors
Biophys. J. 2003 84: 2671-2690. [Abstract] [Full Text] [PDF]  

Brian P. Helmke, Amy B. Rosen, and Peter F. Davies

Mapping Mechanical Strain of an Endogenous Cytoskeletal Network in Living Endothelial Cells
Biophys. J. 2003 84: 2691-2699. [Abstract] [Full Text] [PDF]  

Ron Amir and Marshall Devor

Extra Spike Formation in Sensory Neurons and the Disruption of Afferent Spike Patterning
Biophys. J. 2003 84: 2700-2708. [Abstract] [Full Text] [PDF]  

Jingdong Deng, Karl H. Schoenbach, E. Stephen Buescher, Pamela S. Hair, Paula M. Fox, and Stephen J. Beebe

The Effects of Intense Submicrosecond Electrical Pulses on Cells
Biophys. J. 2003 84: 2709-2714. [Abstract] [Full Text] [PDF]  

Steven Vanni, B. Christoffer Lagerholm, Carol Otey, D. Lansing Taylor, and Frederick Lanni

Internet-Based Image Analysis Quantifies Contractile Behavior of Individual Fibroblasts inside Model Tissue
Biophys. J. 2003 84: 2715-2727. [Abstract] [Full Text] [PDF] [Movies]  

BIOENERGETICS:

Erin Ching, Robert B. Gennis, and Randy W. Larsen

Kinetics of Intramolecular Electron Transfer in Cytochrome bo₃ from Escherichia coli
Biophys. J. 2003 84: 2728-2733. [Abstract] [Full Text] [PDF]  

Sonia Cortassa, Miguel A. Aon, Eduardo Marbán, Raimond L. Winslow, and Brian O'Rourke

An Integrated Model of Cardiac Mitochondrial Energy Metabolism and Calcium Dynamics
Biophys. J. 2003 84: 2734-2755. [Abstract] [Full Text] [PDF] [Appendix]  

ELECTROPHYSIOLOGY:

Bu-Qing Mao, Peter R. MacLeish, and Jonathan D. Victor

Role of Hyperpolarization-Activated Currents for the Intrinsic Dynamics of Isolated Retinal Neurons
Biophys. J. 2003 84: 2756-2767. [Abstract] [Full Text] [PDF]  

Chang Xu and Leslie M. Loew

The Effect of Asymmetric Surface Potentials on the Intramembrane Electric Field Measured with Voltage-Sensitive Dyes
Biophys. J. 2003 84: 2768-2780. [Abstract] [Full Text] [PDF]  

OTHER:

J. H. Miller, L. R. Draper, and E. S. Kempner

Direct Radiation Damage Is Confined to a Single Polypeptide in Rabbit Immunoglobulin G
Biophys. J. 2003 84: 2781-2785. [Abstract] [Full Text] [PDF]  

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